From 5577d29371361aa0cce954919b5b8fed14c74ba9 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 3 Aug 2026 22:08:51 +0000
Subject: [PATCH 1/3] ci: [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.15.22 → v0.16.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.22...v0.16.1)
---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index fa1817387..b5c9af0c8 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -12,7 +12,7 @@ repos:
     - id: debug-statements
     - id: mixed-line-ending
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.22
+    rev: v0.16.1
     hooks:
       - id: ruff-check
       - id: ruff-format

From 759ca02f0bc687692dc806519dcf97e6df3578b7 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 3 Aug 2026 22:12:52 +0000
Subject: [PATCH 2/3] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 package/PartSegImage/image.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/package/PartSegImage/image.py b/package/PartSegImage/image.py
index 32b0b8a92..4866e3db5 100644
--- a/package/PartSegImage/image.py
+++ b/package/PartSegImage/image.py
@@ -232,7 +232,7 @@ def __init__(
         spacing: Spacing,
         time_increment: float = 1.0,
         file_path=None,
-        mask: None | np.ndarray = None,
+        mask: np.ndarray | None = None,
         channel_info: list[ChannelInfo | ChannelInfoFull] | None = None,
         axes_order: str | None = None,
         shift: Spacing | None = None,

From 1a3458ab821eef9d92a0b4a8fedd17c288e8b2b3 Mon Sep 17 00:00:00 2001
From: Grzegorz Bokota <bokota+github@gmail.com>
Date: Tue, 4 Aug 2026 09:41:10 +0200
Subject: [PATCH 3/3] update ruff configuration

---
 package/PartSeg/common_gui/colormap_creator.py | 6 ++++--
 package/PartSegCore/mask_create.py             | 2 +-
 pyproject.toml                                 | 3 ++-
 3 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/package/PartSeg/common_gui/colormap_creator.py b/package/PartSeg/common_gui/colormap_creator.py
index 75e3e5ddf..e416cda81 100644
--- a/package/PartSeg/common_gui/colormap_creator.py
+++ b/package/PartSeg/common_gui/colormap_creator.py
@@ -249,8 +249,10 @@ def __init__(self, parent=None):
         self.reverse_btn = QPushButton("Reverse")
         self.info_label = InfoLabel(
             [
-                "<strong>Tip:</strong> Select color and double click on a color bar below. "
-                "Repeat to add another colors.",
+                (
+                    "<strong>Tip:</strong> Select color and double click on a color bar below. "
+                    "Repeat to add another colors."
+                ),
                 "<strong>Tip:</strong> Double click on a marker to remove it.",
                 "<strong>Tip:</strong> Press and hold mouse left button on a marker to drag and drop it on color bar.",
             ],
diff --git a/package/PartSegCore/mask_create.py b/package/PartSegCore/mask_create.py
index 7f072fa1e..77a777a1e 100644
--- a/package/PartSegCore/mask_create.py
+++ b/package/PartSegCore/mask_create.py
@@ -153,7 +153,7 @@ def _calculate_mask(
     mask_description: MaskProperty,
     dilate_radius: list[int],
     mask: np.ndarray,
-    old_mask: None | np.ndarray,
+    old_mask: np.ndarray | None,
 ) -> np.ndarray:
     if mask_description.dilate != RadiusType.NO and mask_description.dilate_radius != 0:
         if mask_description.dilate_radius > 0:
diff --git a/pyproject.toml b/pyproject.toml
index 6ffd28164..f3ba81d8f 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -321,6 +321,7 @@ select = [
 ignore = ["A003", "SIM108", "ARG002", "ARG003", "ARG004", "PLR2004",
     "PLR0913", # should be re-enabled in a future version
     "PLW1641", # Complain about lack of hash in mutable objects"
+    "PLR0917", # migrate more functions to named only arguments
 ]
 
 [tool.ruff.lint.isort]
@@ -336,7 +337,7 @@ max-complexity = 15
 
 [tool.ruff.lint.per-file-ignores]
 "docs/conf.py" = ["A001"]
-"package/tests/**" = ["ARG", "PLC1901", "S101", "RUF012", "ANN", "FBT"]
+"package/tests/**" = ["ARG", "PLC1901", "S101", "RUF012", "ANN", "FBT", "PLR0917"]
 "package/PartSegCore/sphinx/*" = ["ARG"]
 "package/tests/**.py" = ["PLR2004"]
 "package/PartSegCore/_old_json_hooks.py" = ["PLR0912", "PLR0911", "PLC0415"]