Support for creation of input.csv - design for user input - with custom functionality from our cohort creation scripts

[melwes]

Currently the user needs to fill the input.csv themselves.
We should support them in this. They should be able to specify some selection criteria and then the tool provides the input.csv for them.
This should happen in a seperate script and with a seperate command.

Please take a look at cohort creation

Here we provide functions to select records based on:

• available channels in records and minimum duration of those records (based on mimic_waveform_explore_helper.py get_waveform_records_with_signals_and_minimum_recording_duration)
• whether patient had a specific procedure before the icu stay via cpt_code (cohort_creation_cardoac_surgery.py and cohort_creation_mediastinum_diaphragm_respiratory_surgery.py)
• whether patient is surely on mechanical ventilation (or surely not) during duration (cohort_creation_ventilation.py)
• whether patient surely receives medication during duration by itemid of mimiciii.inputevents_cv (we need to extend this to support mimiciii.inputevents_mv as well). (cohort_creation_vasopressors.py)

Please design a json file in which the user can specifiy their requirements making use of those options.