.gitignore

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/
cover/
pytest.xml

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/
docs/source/fortuna.*
docs/source/scripts.*
docs/source/sp_validation.*
docs/source/*.nblink

# PyBuilder
.pybuilder/
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
#   For a library or package, you might want to ignore these files since the code is
#   intended to run in multiple environments; otherwise, check them in:
# .python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
#   However, in case of collaboration, if having platform-specific dependencies or dependencies
#   having no cross-platform support, pipenv may install dependencies that don't work, or not
#   install all needed dependencies.
#Pipfile.lock

# PEP 582; used by e.g. github.com/David-OConnor/pyflow
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# uv: container is the canonical runtime (see CLAUDE.md); uv is a dev convenience
# and the lockfile has never been tracked. Ignore it rather than commit a
# pinned-dep reproducibility promise the project hasn't made. Flip to tracked
# if we decide to pin deps via uv.
# uv.lock is committed — it is the reproducible pin the container installs from.

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# ruff
.ruff_cache/

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# pytype static type analyzer
.pytype/

# Cython debug symbols
cython_debug/

# Run outputs: one top-level results/ (contents ignored, dir kept) plus the
# legacy output homes that predate the results/ migration.
/results/*
!/results/.gitkeep
!/results/README.md
/output/
cosmo_val/output*
/cosmo_val/harmonic_covariance_gaussian_sims*

cosmo_inference/data/
cosmo_inference/plots/

sp_validation.code-workspace

cosmo_inference/cosmosis_config/cosmosis_pipeline_S*.ini
cosmo_inference/cosmosis_config/priors_S*.ini
cosmo_inference/cosmosis_config/values_S*.ini
cosmo_inference/cosmosis_config/cosmosis_pipeline_glass_mocks_v0*.ini
cosmo_inference/cosmosis_config/cosmosis_pipeline_glass_mock_0*.ini
cosmo_inference/cosmosis_config/cosmosis_pipeline_glass_mock_v0*.ini
cosmo_inference/cosmosis_config/glass_mocks_v*

# Regenerable catalog-paper plots: the paper TeX lives in the separate docs/
# repo, so these are script/notebook outputs, not LaTeX-tracked figures.
papers/catalog/plots/*.pdf

# felt fiber store: canonical copy lives in ~/loom (git-synced privately);
# .felt here is a machine-local symlink into it. Never track it in this repo.
/.felt/
/.felt

# Claude Code agent worktrees — transient isolated checkouts for background
# agents; never tracked.
.claude/worktrees/

# TLDR tool artifacts (auto-generated per-directory status/ignore files).
.tldr/
.tldrignore

# SLURM run logs from cosmo_val validation runs
papers/cosmo_val/logs/

# Ignore scratch notebooks
scratch/*/*.ipynb
# CI lint-gate scratch output (lint.yml writes these in the run tree; never commit)
check.txt
format.txt
report.md
check2.txt
format2.txt
residual.md