From 668055ea690b93f27b8e0b3c559f76a3bba0cc25 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=B6ren=20Wacker?= Date: Tue, 21 Jul 2026 14:42:17 +0200 Subject: [PATCH 1/2] fix measurements list not rendering in high-level example --- docs/resilience-hub/seek/high-level-example.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/docs/resilience-hub/seek/high-level-example.md b/docs/resilience-hub/seek/high-level-example.md index 339ee65..98dac4f 100644 --- a/docs/resilience-hub/seek/high-level-example.md +++ b/docs/resilience-hub/seek/high-level-example.md @@ -4,7 +4,9 @@ ## Experimental design 2 varieties (col-0, ler) and 2 watering regimes (well watered, drought) -> 4 experimental groups. + Measurements: + - RNA-seq of root and and leaf samples - Canopy coverage per experimental group - Some general measurements from the greenhouse. From 51e77852fa5f367e16b6904a1585eeb907dba34b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=B6ren=20Wacker?= Date: Tue, 21 Jul 2026 14:49:50 +0200 Subject: [PATCH 2/2] clarify SOP step is optional with link, and fix combined-study diagram path --- docs/resilience-hub/seek/high-level-example.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/resilience-hub/seek/high-level-example.md b/docs/resilience-hub/seek/high-level-example.md index 98dac4f..84fe145 100644 --- a/docs/resilience-hub/seek/high-level-example.md +++ b/docs/resilience-hub/seek/high-level-example.md @@ -13,7 +13,7 @@ Measurements: ## Study general -Choose combined sequencing and phenotyping study. Add SOP with experimental design map for MIAPPE. +Choose combined sequencing and phenotyping study. Optionally, add an [SOP](../../getting-started/glossary.md) with the experimental design map for MIAPPE — this can also be added later. ## Study source @@ -38,5 +38,5 @@ Create one sequencing assay stream. Describe the library construction and sequen Create one phenotyping assay stream for the greenhouse sensors. Create an assay for the measurements of the output material with the template observation. Define one row per environment variable measured by the greenhouse sensors, describing the variable, the sensor and the scale. This can be one row for temperature and one for humidity. The input is the study observation unit greenhouse. Create a next assay in the stream for the data files, one row for each file, with as input the assay row defined in the previous assay. Describe the and link to the data. - ![](../../docs/img/SEEKSchematicCombinedStudy.png) + ![](../../img/SEEKSchematicCombinedStudy.png) \ No newline at end of file