Thanks for making such a great tool! I research Lake Trout (Salvelinus namaycush), and wanted to use this tool to ensure there was no contamination in my samples. Unfortunately, due to the different number of chromosomes and different chromosome naming conventions, it did not work on my VCF. I changed my chromosome names to standard names, and was able to get results from 22 of the chromosomes, but I would love to get results from the whole dataset.
Thanks for making such a great tool! I research Lake Trout (Salvelinus namaycush), and wanted to use this tool to ensure there was no contamination in my samples. Unfortunately, due to the different number of chromosomes and different chromosome naming conventions, it did not work on my VCF. I changed my chromosome names to standard names, and was able to get results from 22 of the chromosomes, but I would love to get results from the whole dataset.