diff --git a/Dockerfile-prep b/Dockerfile-prep index e47064f..be88843 100644 --- a/Dockerfile-prep +++ b/Dockerfile-prep @@ -8,7 +8,11 @@ FROM informaticsmatters/vs-rdkit-base:latest # openbabel does not install easily with PIP, and we don't have conda so we must use apt to install. # this installs version 3.1.1 -RUN apt-get -y install openbabel python3-openbabel &&\ +# apt-get update is required here (rather than relying on the base image's +# package index) because the bullseye-security mirror periodically prunes +# superseded point-release .debs, leaving a stale index full of 404s. +RUN apt-get -y update &&\ + apt-get -y install openbabel python3-openbabel &&\ apt-get clean ENV PYTHONPATH=/code