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[Week 1–3] neurosim.loader: real HCP data integration + FMRIPREP confound regression #5

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@TheRoy666

loader.py is architecturally complete and tested (24 tests passing).
This issue tracks the real-data integration work on June 9 at NBRC.

Tasks:

  • Load one HCP S1200 subject via BIDSLoader, confirm X.shape = (400, 1200)
  • Verify FMRIPREP confound regression pipeline on real NIfTI
  • Confirm DTI connectome loading via load_connectome() on HCP matrices
  • Swap Section 1 of notebook 02 from synthetic to real HCP data
  • Document any atlas/parcellation mismatches between HCP pipeline and Schaefer-400

Tracks GSoC Weeks 1–3 deliverable.

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