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[Week 11–12] neurosim.plot: UMAP visualisation + publication figure generation #9

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@TheRoy666

plot.py is implemented with 7 functions and 27 tests passing. This issue
tracks the real-data figure generation for the methods paper.

Tasks:

  • Install umap-learn and verify plot_state_space() uses UMAP on real data
  • Generate 6-panel summary figure (plot_neurosim_summary) on HCP subject
  • Generate cohort energy violin plot (plot_cohort_energy) for AUD results
  • Generate stimulation target ranking (plot_stimulation_targets) for epilepsy SOZ
  • Verify all figures save correctly as PNG + PDF at 300 DPI
  • Draft Figure 1 and Figure 2 for methods paper

Tracks GSoC Weeks 11–12 deliverable.

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enhancementNew feature or requestscienceNeeds review of scientific methodology from journal papers

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