Plotting the character state data

[mamunimsfcu16]

Hi,
Good day.

Plotting the character state data isn't working. I cann't see the level Color and Group that I have in the uploaded file.

Thanks in advance.

Sincerely
Mamun

[arklumpus]

Hi, did you use the "Parse Node States" module to load the data? And are the taxon names in the attachment file exactly the same as in the tree?

[mamunimsfcu16]

Hello, Thank you very much for your quick response. Yes, I have tried but failed to do this. I have attached the data and tree file for your help. Many thanks in advance. Sincerely Mamun

…

On Thu, May 29, 2025 at 7:16 PM Giorgio Bianchini ***@***.***> wrote: *arklumpus* left a comment (arklumpus/TreeViewer#55) <#55 (comment)> Hi, did you use the "Parse Node States" module to load the data? And are the taxon names in the attachment file exactly the same as in the tree? — Reply to this email directly, view it on GitHub <#55 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AIYJZTD3YVX2V25VWWT43G33A3UBHAVCNFSM6AAAAAB6FC47Z2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDSMJZGA4DQMJTHE> . You are receiving this because you authored the thread.Message ID: ***@***.***>

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Sincerely yours Abdullah Al Mamun, PhD Sun Yat-sen University, China Genome Color Group Agromyces aurantiacus #117733 Actinobacteria Agromyces aurantiacus YIM 21741 #117733 Actinobacteria Agromyces binzhouensis OAct353 #117733 Actinobacteria Agromyces brachium IFO 16238 #117733 Actinobacteria Agromyces intestinalis KACC 19306 #117733 Actinobacteria Agromyces kandeliae #117733 Actinobacteria Agromyces kandeliae Q22 #117733 Actinobacteria Agromyces luteolus IFO 16235 #117733 Actinobacteria Alkadihalobacillus algicola #999933 Firmicutes Alkalihalobacillus algicola KMM 3737 #999934 Firmicutes Alkalihalobacillus hemicentroti JSM 076093 #999935 Firmicutes Alkalihalobacillus nanhaiisediminis NH3 #999936 Firmicutes Bacillus altitudinis #999937 Firmicutes Bacillus altitudinis 41KF2b #999938 Firmicutes Bacillus australimaris NH7I_1 #999939 Firmicutes Bacillus cabrialesii subsp. cabrialesii TE3 #999940 Firmicutes Bacillus cereus #999941 Firmicutes Bacillus cereus ATCC 14579 #999942 Firmicutes Bacillus glycinifermentans GO-13 #999943 Firmicutes Bacillus halotolerans ATCC 25096 #999944 Firmicutes Bacillus haynesii NRRL B-41327 #999945 Firmicutes Bacillus inaquosorum KCTC 13429 #999946 Firmicutes Bacillus licheniformis ATCC 14580 #999947 Firmicutes Bacillus LJIY_s #999948 Firmicutes Bacillus LJIY_s FJAT-21963 #999949 Firmicutes Bacillus MKZN_s #999950 Firmicutes Bacillus MKZN_s GM3FR #999951 Firmicutes Bacillus mojavensis RO-H-1 #999952 Firmicutes Bacillus nitratireducens 4049 #999953 Firmicutes Bacillus paralicheniformis #999954 Firmicutes Bacillus paralicheniformis KJ-16 #999955 Firmicutes Bacillus paramobilis #999956 Firmicutes Bacillus paramobilis BML-BC017 #999957 Firmicutes Bacillus paramycoides #999958 Firmicutes Bacillus paramycoides NH24A2 #999959 Firmicutes Bacillus paranthracis Mn5 #999960 Firmicutes Bacillus pumilus ATCC 7061 #999961 Firmicutes Bacillus rugosus SPB7 #999962 Firmicutes Bacillus safensis subsp. osmophilus BC09 #999963 Firmicutes Bacillus safensis subsp. safensis FO-36b #999964 Firmicutes Bacillus siamensis #999965 Firmicutes Bacillus siamensis KCTC 13613 #999966 Firmicutes Bacillus sonorensis NBRC 101234 #999967 Firmicutes Bacillus spizizenii NRRL B-23049 #999968 Firmicutes Bacillus subtilis NCIB 3610 #999969 Firmicutes Bacillus tequilensis #999970 Firmicutes Bacillus tequilensis KCTC 13622 #999971 Firmicutes Bacillus velezensis R-502 #999972 Firmicutes Bacillus wiedmannii FSL W8-0169 #999973 Firmicutes Bacillus xanthoxyli #999974 Firmicutes Bacillus xiamenensis #999975 Firmicutes Bacillus xiamenensis HYC-10 #999976 Firmicutes Bacillus zanthoxyli 1433 #999977 Firmicutes Bacillus zhangzhouensis #999978 Firmicutes Bacillus zhangzhouensis DW5-4 #999979 Firmicutes Brachybacterium conglomeratum NCIB 9859 #117733 Actinobacteria Brachybacterium paraconglomeratum #117733 Actinobacteria Brachybacterium paraconglomeratum LMG 19861 #117733 Actinobacteria Brachybacterium sacelli LMG 20345 #117733 Actinobacteria Brachybacterium saurashtrense JG 06 #117733 Actinobacteria Cellulomonas aerilata 5420S-23 #117733 Actinobacteria Cellulomonas composti #117733 Actinobacteria Cellulomonas composti TR7-06 #117733 Actinobacteria Cellulomonas gelida DSM 20111 #117733 Actinobacteria Cellulomonas massiliensis JC225 #117733 Actinobacteria Cellulomonas uda DSM 20107 #117733 Actinobacteria Cellvibrio fibrivorans R-4079 #88CCEE Gammaproteobacteria Cellvibrio fulvus NCIMB 8634 #88CCEE Gammaproteobacteria Cellvibrio ostraviensis #88CCEE Gammaproteobacteria Cellvibrio ostraviensis LMG 19434 #88CCEE Gammaproteobacteria Curtobacterium albidum DSM 20512 #117733 Actinobacteria Curtobacterium allii 20TX0166 #117733 Actinobacteria Curtobacterium ammoniigenes NBRC 101786 #117733 Actinobacteria Curtobacterium citreum #117733 Actinobacteria Curtobacterium citreum DSM 20528 #117733 Actinobacteria Curtobacterium flaccumfaciens LMG 3645 #117733 Actinobacteria Curtobacterium luteum DSM 20542 #117733 Actinobacteria Curtobacterium oceanosedimentum ATCC 31317 #117733 Actinobacteria Curtobacterium pusillum DSM 20527 #117733 Actinobacteria Cytobacillus firmus NBRC 15306 #999933 Firmicutes Cytobacillus oceanisediminis #999934 Firmicutes Cytobacillus oceanisediminis H2 #999935 Firmicutes Cytobacillus pseudoceanisediminis BNO1 #999936 Firmicutes Demequina iriomotensis #117733 Actinobacteria Demequina iriomotensis NBRC 109399 #117733 Actinobacteria Demequina mangrovi NBRC 105856 #117733 Actinobacteria Demequina maris NBRC 109392 #117733 Actinobacteria Demequina phytophila #117733 Actinobacteria Demequina phytophile HI12-45 #117733 Actinobacteria Demequina rhizosphaerae NBRC 109397 #117733 Actinobacteria Demequina subtropica NBRC 109396 #117733 Actinobacteria Demequina sylvatica NBRC 109395 #117733 Actinobacteria Escherichia hominis #88CCEE Gammaproteobacteria Escherichia hominis NSJ-73 #88CCEE Gammaproteobacteria Escherichia marmotae HT073016 #88CCEE Gammaproteobacteria Exiguobacterium acetylicum DSM 20416 #999933 Firmicutes Exiguobacterium enclense #999934 Firmicutes Exiguobacterium enclense NIO-1109 #999935 Firmicutes Exiguobacterium indicum HHS31 #999936 Firmicutes Exiguobacterium LGIW s BMC-KP #999937 Firmicutes Exiguobacterium LGIW_s #999938 Firmicutes Exiguobacterium sibiricum 255-15 #999939 Firmicutes Fictibacillus barbaricus V2-BIII-A2 #999940 Firmicutes Fictibacillus halophilus #999941 Firmicutes Fictibacillus halophilus AS8 #999942 Firmicutes Fictibacillus nanhaiensis #999943 Firmicutes Fictibacillus nanhaiensis JSM 082006 #999944 Firmicutes Fictibacillus phosphorivorans Ca7 #999945 Firmicutes Halobacillus aidingensis AD-6 #999946 Firmicutes Halobacillus dabanensis D-8 #999947 Firmicutes Halobacillus faecis IGA7-4 #999948 Firmicutes Halobacillus fulvus SKP4-6 #999949 Firmicutes Halobacillus marinus #999950 Firmicutes Halobacillus marinus KGW1 #999951 Firmicutes Halobacillus profundi IS-Hb4 #999952 Firmicutes Halobacillus trueperi DSM 10404 #999953 Firmicutes Halobacillus yeomjeoni MSS-402 #999954 Firmicutes Microbacterium arborescens #117733 Actinobacteria Microbacterium arborescens DSM 20754 #117733 Actinobacteria Microbacterium enclense NIO-1002 #117733 Actinobacteria Microbacterium flavescens DSM 20643 #117733 Actinobacteria Microbacterium ginsengisoli DSM 18659 #117733 Actinobacteria Microbacterium hominis #117733 Actinobacteria Microbacterium hominis NBRC 15708 #117733 Actinobacteria Microbacterium imperiale DSM 20530 #117733 Actinobacteria Microbacterium ketosireducens #117733 Actinobacteria Microbacterium ketosireducens DSM 12510 #117733 Actinobacteria Microbacterium LSTV_s #117733 Actinobacteria Microbacterium LSTV_s CD11_3 #117733 Actinobacteria Microbacterium natoriense TNJL143-2 #117733 Actinobacteria Microbacterium neungamense #117733 Actinobacteria Microbacterium neungamense EF45044 #117733 Actinobacteria Microbacterium oleivorans NBRC 103075 #117733 Actinobacteria Microbacterium paraoxydans NBRC 103076 #117733 Actinobacteria Microbacterium proteolyticum RZ36 #117733 Actinobacteria Microbacterium pullorum Sa4CUA7 #117733 Actinobacteria Microbacterium radiodurans GIMN1.002 #117733 Actinobacteria Microbacterium yannicii G72 #117733 Actinobacteria Nocardioides antri BN140041 #117733 Actinobacteria Nocardioides baculatus G10 #117733 Actinobacteria Nocardioides exalbidus DSM 22017 #117733 Actinobacteria Nocardioides humi DCY24 #117733 Actinobacteria Nocardioides hwasunensis #117733 Actinobacteria Nocardioides hwasunensis HFW-21 #117733 Actinobacteria Nocardioides pelophilus THG-T63 #117733 Actinobacteria Nocardioides sambongensis #117733 Actinobacteria Nocardioides sambongensis KUDC5002 #117733 Actinobacteria Novosphingobium barchaimii LL02 #CC6677 Alphaproteobacteria Novosphingobium gossypii JM-1396 #CC6677 Alphaproteobacteria Novosphingobium guangzhouense SA925 #CC6677 Alphaproteobacteria Novosphingobium kaempferiae Sx8-5 #CC6677 Alphaproteobacteria Novosphingobium lindaniclasticum LE124 #CC6677 Alphaproteobacteria Novosphingobium mathurense #CC6677 Alphaproteobacteria Novosphingobium mathurense SM117 #CC6677 Alphaproteobacteria Novosphingobium naphthalenivorans NBRC 102051 #CC6677 Alphaproteobacteria Novosphingobium panipatense SM16 #CC6677 Alphaproteobacteria Novosphingobium silvae FGD1 #CC6677 Alphaproteobacteria Novosphingobium SODQ_s #CC6677 Alphaproteobacteria Novosphingobium SODQ_s PhB55 #CC6677 Alphaproteobacteria Novosphingobium soli #CC6677 Alphaproteobacteria Novosphingobium soli CC-TPE-1 #CC6677 Alphaproteobacteria Paenarthrobacter histidinolovorans DSM 20115 #117733 Actinobacteria Paenarthrobacter nicotinovorans DSM 420 #117733 Actinobacteria Paenarthrobacter ureafaciens #117733 Actinobacteria Paenarthrobacter ureafaciens DSM 20126 #117733 Actinobacteria Paenibacillus illinoisensis NRRL NRS-1356 #999933 Firmicutes Paenibacillus massiliensis subsp. massiliensis Smarlab BioMol-2301065 #999934 Firmicutes Paenibacillus massiliensis subsp. panacisoli #999935 Firmicutes Paenibacillus massiliensis subsp. panacisoli Gsoil 1411 #999936 Firmicutes Paenibacillus terreus D33 #999937 Firmicutes Paenibacillus xylanilyticu XIL14 #999938 Firmicutes Paracoccus aestuariivivens #CC6677 Alphaproteobacteria Paracoccus aestuariivivens GHD-30 #CC6677 Alphaproteobacteria Paracoccus amoyensis 11-3 #CC6677 Alphaproteobacteria Paracoccus caeni #CC6677 Alphaproteobacteria Paracoccus caeni MJ17 #CC6677 Alphaproteobacteria Paracoccus homiensis DD-R11 #CC6677 Alphaproteobacteria Paracoccus litorisediminis GHD-05 #CC6677 Alphaproteobacteria Paracoccus lutimaris HDM-25 #CC6677 Alphaproteobacteria Paracoccus salsus EGI L200073 #CC6677 Alphaproteobacteria Paracoccus shanxieyensis DK398 #CC6677 Alphaproteobacteria Paracoccus simplex F5 #CC6677 Alphaproteobacteria Paracoccus sordidisoli LP91 #CC6677 Alphaproteobacteria Paracoccus zeaxanthinifaciens #CC6677 Alphaproteobacteria Paracoccus zeaxanthinifaciens ATCC 21588 #CC6677 Alphaproteobacteria Peribacillus butanolivorans #999933 Firmicutes Peribacillus butanolivorans DSM 18926 #999934 Firmicutes Priestia aryabhattai #999935 Firmicutes Priestia aryabhattai B8W22 #999936 Firmicutes Priestia koreensis #999937 Firmicutes Priestia koreensis DSM 16467 #999938 Firmicutes Priestia megaterium #999939 Firmicutes Priestia megaterium NBRC 15308 #999940 Firmicutes Priestia qingshengii G19 #999941 Firmicutes Pseudalkalibacillus hwajinpoensis #999942 Firmicutes Pseudalkalibacillus hwajinpoensis SW-72 #999943 Firmicutes Rossellomorea arthrocnemi #999944 Firmicutes Rossellomorea arthrocnemi EAR8 #999945 Firmicutes Rossellomorea LDWH_s #999946 Firmicutes Rossellomorea LDWH_s LK16 #999947 Firmicutes Rossellomorea marisflavi #999948 Firmicutes Rossellomorea marisflavi JCM 11544 #999949 Firmicutes Rossellomorea VFMV s GN17 #999950 Firmicutes Sinorhizobium medicae #CC6677 Alphaproteobacteria Sinorhizobium medicae WSM419 #CC6677 Alphaproteobacteria Sinorhizobium meliloti LMG 6133 #CC6677 Alphaproteobacteria Sinorhizobium numidicum ORS 1407 #CC6677 Alphaproteobacteria Tsuneonella aeria 100921-2 #CC6677 Alphaproteobacteria Tsuneonella dongtanensis KCTC 22672 #CC6677 Alphaproteobacteria Tsuneonella litorea #CC6677 Alphaproteobacteria Tsuneonella litorea YG55 #CC6677 Alphaproteobacteria Tsuneonella rigui WW3 #CC6677 Alphaproteobacteria Tsuneonella troitsensis JCM 17037 #CC6677 Alphaproteobacteria Virgibacillus carmonensis LMG 20964 #999933 Firmicutes Virgibacillus halodenitrificans #999934 Firmicutes Virgibacillus halodenitrificans DSM 10037 #999935 Firmicutes Virgibacillus marseillensis Marseille-P3610 #999936 Firmicutes Virgibacillus olivae E308 #999937 Firmicutes Virgibacillus salarius SA-Vb1 #999938 Firmicutes

[arklumpus]

Hi, I think GitHub removed the attachments from the email... Can you please upload them by replying directly on GitHub (#55)? Otherwise, you can just email me at giorgio.bianchini(at)bristol.ac.uk .