- FunMap version: 0.1.20
- Python version: 3.10.14
- Operating System:
Description
The 'OurCohort_P' dataset contains only 'Gene' data, leading to no samples being included in this dataset. During the QC process, funmap did not consider this dataset, and I overlooked the fact that this file was not included in the output report. Subsequently, I used nohup to run the next step, and during the 'Preparing gs data ... done' process, it failed to ignore this empty dataset, resulting in a 'KeyError: ["OurCohort_P"] not in index' error. Initially, a message indicated 'OurCohort_P ... not enough samples, skipped', but it was easy to miss.
What I Did
nohup funmap run -c dataset_2024.yaml &
KeyError: "['OurCohort_P'] not in index"
Description
The 'OurCohort_P' dataset contains only 'Gene' data, leading to no samples being included in this dataset. During the QC process, funmap did not consider this dataset, and I overlooked the fact that this file was not included in the output report. Subsequently, I used nohup to run the next step, and during the 'Preparing gs data ... done' process, it failed to ignore this empty dataset, resulting in a 'KeyError: ["OurCohort_P"] not in index' error. Initially, a message indicated 'OurCohort_P ... not enough samples, skipped', but it was easy to miss.
What I Did