From b1c8cb12578b244d3cb4dd2eb72b9862da365eb0 Mon Sep 17 00:00:00 2001 From: Michael Chirico Date: Tue, 18 Aug 2026 22:14:03 +0000 Subject: [PATCH] Move data.table from Depends to Imports --- DESCRIPTION | 6 +++--- man/IBRtools.Rd | 1 + man/ibr_chart.Rd | 2 +- man/ibrv2_chart.Rd | 2 +- tests/testthat/Rplots.pdf | Bin 8422 -> 8098 bytes 5 files changed, 6 insertions(+), 5 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index a43bd87..8815442 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -17,13 +17,12 @@ License: GPL-3 Encoding: UTF-8 LazyData: true Roxygen: list(markdown = TRUE) -RoxygenNote: 7.2.3 Depends: R (>= 3.5.0), dplyr (>= 1.0.6), - tibble (>= 3.0.4), - data.table (>= 1.13.2) + tibble (>= 3.0.4) Imports: + data.table (>= 1.13.2), gtools (>= 3.9), tidyr (>= 1.1.3), fmsb (>= 0.7.1), @@ -34,3 +33,4 @@ Suggests: covr, testthat (>= 3.0.0) Config/testthat/edition: 3 +Config/roxygen2/version: 8.0.0 diff --git a/man/IBRtools.Rd b/man/IBRtools.Rd index 4c4c92d..d5273de 100644 --- a/man/IBRtools.Rd +++ b/man/IBRtools.Rd @@ -2,6 +2,7 @@ % Please edit documentation in R/IBRtools-package.R \docType{package} \name{IBRtools} +\alias{-package} \alias{IBRtools} \title{'IBRtools': Integrating Biomarker-Based Assessments and Radarchart Creation} \description{ diff --git a/man/ibr_chart.Rd b/man/ibr_chart.Rd index 05ce6b5..d4bc059 100644 --- a/man/ibr_chart.Rd +++ b/man/ibr_chart.Rd @@ -36,7 +36,7 @@ ibr_chart( \item{cglcol}{Line color for radar grids: Default "navy"} -\item{cglty}{Line type for radar grids: Default 3, which means dotted line.} +\item{cglty}{Line type for radar grids: Default 3, dotted line. For radatchartcirc(), default 1, solid line.} \item{axislabcol}{Color of axis label and numbers: Default "blue"} diff --git a/man/ibrv2_chart.Rd b/man/ibrv2_chart.Rd index 3e18f6c..c3db785 100644 --- a/man/ibrv2_chart.Rd +++ b/man/ibrv2_chart.Rd @@ -36,7 +36,7 @@ ibrv2_chart( \item{cglcol}{Line color for radar grids: Default "navy"} -\item{cglty}{Line type for radar grids: Default 3, which means dotted line.} +\item{cglty}{Line type for radar grids: Default 3, dotted line. For radatchartcirc(), default 1, solid line.} \item{axislabcol}{Color of axis label and numbers: Default "blue"} diff --git a/tests/testthat/Rplots.pdf b/tests/testthat/Rplots.pdf index 3b3a1336f00308ee1ca1755f059bdb4fdaab3f67..7a3a6b94b3407d00a871ca55fa9f4db6e6840f7a 100644 GIT binary patch delta 3910 zcmZWpc{mhm`zA@pQg*UemMnuY%nW0zIQFzyvt>^P*+$k;iR7R$5yp}=+ZgLuW{8ZP zB4Nak?6PE?vE{4N`CY&7JH3BB*K^edaf)9R)hkfN=iVG5>T31!NkW! z$1%WF?2?X}lA_Z8W2oBz28g^O>RCC1ilPb{Mt=cGu`==zg0MEf#|;c>nsF45_6=Va zY|&=Pw|^BQ7Bdp~seX(%o@IOeW&WiEw<8B^2K#>BK}J`f=g zuX<2$^!W1`y&#@)%CztP?wyU4m8&j9j&PkAl?P>iNx6!m+w_$cH7v7x3_IDw(k+h? zsH)nn?^$%&B4XK|o5J)_SNf90T9rb@PlIU4)N>~!6S>(({T9e=-!n(g(!Oo=U0`7P!w*Tdc|WOT4(bVS)&eo@ZyPnW-+eua06 zc4$O7@+7o|jgXrqIIwEXEbx3r=_efaY(k3PtqJ^edu@p5Vk^9i$rra8JHG z0A6HL3ZCt)97h<2LA>VZrlQ>hkzpcXEE1nI5a=M=e#Bz}_Q`T5laPNOG)XEJw@LQz zy7$3P4kZw6p4DK4!QM=9?m(#nZMx5Id8xWpnwQsqM3DMDmzs*ty0k|$K*E8nH+cv2 zAJ@_tO(zB&K&<7I#oknmx62L7Yv*eVf=Df|S=^@kB8ifk%zJV99Rom_eGvkR>yaSDrY=8fOfez+R=*saYT9iL>)%9rKPnBlfq^GRkn zEDo_?CbHBBpxpM@p%l#%+SmMaOYj%HSO0W>gL#J>9i%0XuB)Z@F6N>wMF<-4=)LbI zvB>DlBAF~m%h$?V+t?R8Je`%rwk8?tcW%lZ|NGnuq5Pg)_gyI&saxmTw(29h&zK4}2!0a8q_SGq6m@Ta?i^ z46FLcX@{5V&1a<#_mbLdXw;3QTgK9dyEi+Y0-l^0Gh`l>+DuePITn~q^M04g;)ECe zdfK(+fqOu#D-8~9-wDzt#$%;FDZ4z`AI6Xl5-!q1LbL0 ziJe(j^py7vBK2wTZa>^Sod-T-9In_CTR%s2)AZ}-5{=mlHSS_DBHC}-S8ChIc7Ec> zQ|>|e$wi@f9aC9V51`*gsRkH#MUd9WprA&mg?h z{LT@17}mOld33zD#{r#&RAf(2U;Vrl9#LU?yQ6cshZG-CAH8mWv=oE1J*F)M(s(|8 zUq<@ia=6+`so9%f*W230dvT(d4#KZP=SvykF0}PCZo%|!(Ib&FnOjerrWmjabXe?X z>x%;+XKR}1Y6`BA>koa;)(94HQeP&r?+IMWqNyn#GV)6T{b6{+H1a)CAAER;G;&Rj zWf>oZeXeU>{;l^?r>N}h+XX(_LL0N;#PfC*6`fZ>sUWGtYyJj=-}l%_D+)X*>kfqwY zM`XUq)4acm3fSEju-Rw^!js50esOloNmdSZWv)ZIYooaWP6z`Zu1H7Z?KyZvUp?p)$g*lqVib8h~Yv*D9BhEaHk_*mL>h1bv z`XfJ~N~`7bZFr(}PFLI_{=^?arq8&&ZJnk zBtCdW*m}rG_X2#E*Cg-8HRoyF_l{`NWRlIw&6lKoWaFGmo1k;uwI($-;thGIDQzkL zk=Zv4YFEW5VE+}pV)iEw$ttT9eoT`tXe0SgXZipkcnTTgU;1~?5L`hkgK;}G)uYH% zAcDF0(^Z5dwo~Ayz1nVqPYthZ(#}srE+wR^0^2E9M=p?$-3dH?`$x%cH<7~6XJ+z$ygqbTVE zzvbIfL4L%5cSPq8otxt&d_+oAHhWJ?rm^poejWTv2N$bkmmm~WwS<Y6obUj&yfhPJbE|=Rm%Q z4=qL1Gj7J3$5wRPs4&9XoInXrqyNhz7FiVKmMv*Q2$GF*;sIdh5D$)^)Pf8+=f3iI zbgg8*88ZB3%q7}{9IrS14}XOkdE-6pghFrC`3*HS%zcky+#Wp}M6ZDFa424CoBPp* zJri4(=#=_HbWW$>glI#N4w2cC4e^TXD6vH<(IKw@(*LT>L zZ4Tif$J2oiXtegxZNhXIz?rrn`h8FHjSyW{Smvqg_Gjn>N2=(}7-_qkKGsKW64@% z-x`dPv1X@w)zf>t&---$bsy*VK9B3X&g*j>_e=E^jTA*OkUUUcK>-AkS5mmbAZLKQ zt>qkeM^Hjb87L3@zgeoS3>8oonEIrG3Ze+bT%{C3r(5eI?UgRf=Q|Sb)U@rL;0$Qe zB_Eix#c7YxJmRtq)lk$ujaZ2YM@&Cz>P=i(9bS62eW-QNr+x6@dvo)Ox>X5F*B)8l zUzBSB)317*J^MLiL;T?L{^^gN%!!SzL9TGQF>EVDE|LPlxUsN42+w-$|u)5|7q+z2U=A+5UlmjVQ`Pil*R5m;H$il$cR?R?8nw}t77pG{3u6-b)V zx$iOk)c7Cs3zW;7Y~-E&=JSf6@ffzL-s#`x}u9eE{;HBscke%c)bsJ41Ld4GwBmx@7T*OKL<%v z1Xi|4A7^TKRpD-?yfku8xv3lOrw~Q*gI#kmdZd_^d?EeZk;R2`P;bV>n5^S6G*2N6 zz5D4U(mh4-V2*WBoL1^mKXG};7}NLS`ZZDmt0|0Q@ZIzEM04h#K$QDT(B~$AdsEQ@ z^*iGeGhKc_6&=T zj0Lx5Lbm%&eJ0*dWd>uTRsJ>pxwA}qeZ~rVfVx~thXb<;G?BIv{T%} z0(;2wAe(Mno-OFcbPC8d)5yofO^V~l&6jANzl4ClLY5<6TEoY=-h5)4;XIf_@AK~p zb7zALQWYRsK7; zR<6VV_^|O%>`85qZ-$g?z3Qix=4;;%Q^qfWm`Qr{tghm)+e)4=OZi~uOe^xDo77WM zmcNA2KnAKe9G*1wXUXnnaHKs*9Y$X8L#_EJ(P9^GUeeoMd7QskC0cscR1MOaI*=KCqlVpiG-w zivsfdJgVn*3Xf)GFSd@CGx=!ZR-$o@^d80irv}tN*}nOA(PhYD>zoP8-)=OXOvBOt zq9ak$g15ak2DYJu@53L`E)BU5aQBr zUo07aJ#<6z^OT-%w3ls7_k%0-8}(b$@No9JAxp_K63|VH8Mhw3e~RiAA^Cx?J;bY; ziL~g8X&kk)Ta%0*;S3T`45Z-?4f{fW2uRGC>tEi|) zhFxeI2S`qa(@wu<=C=p0u*Orxq9l<4_8P#c566NQuKx9z^{fEIb9Sn(nDVnjmh9$I zzwabMG+aMDUzjcO#2v=3Vd1d4JZ34eGdSJxqNH$2C!hO2t!tLaZ=3kh+#^cfo7c0} z7zEH&GhKFS z_{}Gm8LEw@^;P=K?PsI=e8f;)*F9hh*y5n)^WIEf z53W0d)cZ_sAne~iQDMtma6f4wYSW4~=$zBxwKaK9eR}BW;TUHtd>J)WIw`5$GNId6 zF3VlBuIPP6=(z4HJHKCdTxZc%?Vo|YPp$g^SYAZK`j!L#V0t343F4U}B z-;ki<`XFC?(BLKkSWeiv2D7GK$-&Z z1x-d=CF4WHRa&nc=7-?h==0knV{#@Q3?FPqkw$=O6_#R%-9cFR$?^%LHLo@7r(!sD zo%#{_=t`i=-JP!yk;lMU74?Wv&8f<$4h2UUC*e-Cm3+UjJgD~krOn(MO zG{d|P#=Q&HSqo%>I=V^8-UV~l(i_ynAN5XL+a^rBAj-AL$32_DS@aPsh27lB4aMt& zU2Kf;qCU~mWvFOJ9oXr%2=$lmPpF+<8EW#OAB(&N=@JGlsr2y6s;TA!Ev~^hAy#l$ zycp}Mp3lQIVw+oBGYmgnBpbIEw2Awu){gksG#hwlqij*8G z5}{6JL{k58Cdxt+v3D0Pg7wHUZ@OfI^j=rO$E#O`4!lhO6I7YUYF=Y4s^jNEzQ~rf z=cvG6>(z6O`l<5v*GcZ|mZysJ7`TaV;H*>WX8hUL z9h6-_NvbghX-i@?`u1#VYb!17&tztjo;SM*SuO6qr$EXqo6IZ}p;dC6!DVYzEH}$> zLI9G@sAA)mV*R3~0=Z1Z`%eKUKYI+I9)PuvH51qJ1zQz`d_2CWM(ru-4S?m}ZgjTz z=SW+Mbhsfua4=O{f4LlMz!s*D!2Mn|qwdy*p4uJvN*)58-vtkTM*>}_nBL29_Ocl_ z$GESl)*9(_Id3h@wjWqa``|jo;&7t)$=^rqh#GBumhvemKyA0;zCkL4k2bXRm9HSZ zd${WN@(`L~Qx?E%&)Y&97EB70FdD2M`OvhsXCsrGvd5?sN;nGJ-y{O&P-N9g|i%ie1G$SNEX$@nj8fMTFR?NlQ3Sy!FT+}$p7FkTL_D7B}_bS<5EH=3ImKP*#J)N5k9Byz^-}>$coI4j-|zfxd`0YR;73_oABabHkS^KkgED z$Vz;bQRkPFk$G+J-Y)?*lI_fe9HPt5Uo|FIrQIWxX-$%4vJ>$C5LTMEBUyb?dvgME znx~i!cKs_iW=3mTNds#b7>fkD%4X;4i{N_?mL}sHH#Z4OSC_3J3CDGIWa_sJ#yX{9 zM0w}2wB?ZNx3TmWjz8qW&ONS4ihoXlDoU^$EP&WyGele2 zT{6>ezP|ZrJ;a6M(mfgQ<#?W8)0WyGe6si#yH3L=n6p8qhXs z4US|+@BA2BDjh;#(b+wAci0#(dhy#6hxf^CcC77TBq?)yzi3+HsfFbZnV_NxGDIu5-d=N?~hMr$b9R!66%Kv%<5rPcA zU*r`PA&|c`u#(c>8Wf62;D@4t3JSpg9s(6$p#Rn&An4y3SW)4x?;s%9-`d|nAyCk- zpx6IjdI%H>{>uyl{YUyhl(VPL9TbC#ilCgCXXqV41t`W}K%4;vRb&tq)i%;$_#acS B