From 32dc1fb02d3993f965dbe6829539dd5c0e0f5430 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Thu, 12 Feb 2026 12:47:29 +0200
Subject: [PATCH 01/26] add IncludeDirs option to Xray Bom Lib

---
 sca/bom/xrayplugin/plugin/config.go |  2 ++
 sca/bom/xrayplugin/xraylibbom.go    | 10 ++++++++++
 2 files changed, 12 insertions(+)

diff --git a/sca/bom/xrayplugin/plugin/config.go b/sca/bom/xrayplugin/plugin/config.go
index 216586a8c..3d5c9f21b 100644
--- a/sca/bom/xrayplugin/plugin/config.go
+++ b/sca/bom/xrayplugin/plugin/config.go
@@ -12,4 +12,6 @@ type Config struct {
 	Version string `json:"version,omitempty"`
 	// [Optional] Patterns (git ignore like) to ignore when scanning the target.
 	IgnorePatterns []string `json:"ignorePatterns,omitempty"`
+	// [Optional] Specific directories to scan.
+	IncludeDirs []string `json:"includeDirs,omitempty"`
 }
diff --git a/sca/bom/xrayplugin/xraylibbom.go b/sca/bom/xrayplugin/xraylibbom.go
index 02686ce55..4e6dd5fb4 100644
--- a/sca/bom/xrayplugin/xraylibbom.go
+++ b/sca/bom/xrayplugin/xraylibbom.go
@@ -18,6 +18,7 @@ import (
 type XrayLibBomGenerator struct {
 	binaryPath     string
 	ignorePatterns []string
+	includeDirs    []string
 	totalTargets   int
 }
 
@@ -49,6 +50,14 @@ func WithIgnorePatterns(ignorePatterns []string) bom.SbomGeneratorOption {
 	}
 }
 
+func WithIncludeDirs(includeDirs []string) bom.SbomGeneratorOption {
+	return func(sg bom.SbomGenerator) {
+		if sbg, ok := sg.(*XrayLibBomGenerator); ok {
+			sbg.includeDirs = includeDirs
+		}
+	}
+}
+
 func (sbg *XrayLibBomGenerator) WithOptions(options ...bom.SbomGeneratorOption) bom.SbomGenerator {
 	for _, option := range options {
 		option(sbg)
@@ -114,6 +123,7 @@ func (sbg *XrayLibBomGenerator) executeScanner(xrayLibBinary string, target resu
 		Type:           string(cyclonedx.ComponentTypeFile),
 		Name:           target.Target,
 		IgnorePatterns: sbg.ignorePatterns,
+		IncludeDirs:    sbg.includeDirs,
 	}
 	if scanConfigStr, err := utils.GetAsJsonString(scanConfig, false, true); err == nil {
 		log.Debug(fmt.Sprintf("Scan configuration: %s", scanConfigStr))

From 1a1a65996b5c18b8f93a6c42cb4f8464e745810f Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Thu, 12 Feb 2026 16:22:02 +0200
Subject: [PATCH 02/26] prepare to pass working dirs

---
 commands/audit/audit.go          | 23 +++++++-----
 sca/bom/bomgenerator.go          | 37 +++++++++++++------
 sca/bom/xrayplugin/xraylibbom.go | 61 ++------------------------------
 utils/results/results.go         |  4 +++
 4 files changed, 47 insertions(+), 78 deletions(-)

diff --git a/commands/audit/audit.go b/commands/audit/audit.go
index 47d6c6fc6..7ec00cc06 100644
--- a/commands/audit/audit.go
+++ b/commands/audit/audit.go
@@ -176,22 +176,30 @@ func logScanPaths(workingDirs []string, isRecursiveScan bool) {
 	log.Info("Scanning paths:", strings.Join(workingDirs, ", "))
 }
 
-func (auditCmd *AuditCommand) Run() (err error) {
-	isRecursiveScan := false
+func getRelatedWorkingDirs(auditCmd *AuditCommand) (workingDirs []string, isRecursiveScan bool, err error) {
 	if _, ok := auditCmd.bomGenerator.(*xrayplugin.XrayLibBomGenerator); ok {
 		if len(auditCmd.workingDirs) > 1 {
-			return errors.New("the 'audit' command with the 'Xray lib' BOM generator supports only one working directory. Please provide a single working directory")
+			return nil, false, errors.New("the 'audit' command with the 'Xray lib' BOM generator supports only one working directory. Please provide a single working directory")
 		}
+		// OLD logic:
 	} else if utils.IsScanRequested(utils.SourceCode, utils.ScaScan, auditCmd.ScansToPerform()...) || auditCmd.IncludeSbom {
 		// Only in case of SCA scan / SBOM requested and if no workingDirs were provided by the user
 		// We apply a recursive scan on the root repository
 		isRecursiveScan = len(auditCmd.workingDirs) == 0
 	}
-	workingDirs, err := coreutils.GetFullPathsWorkingDirs(auditCmd.workingDirs)
+	workingDirs, err = coreutils.GetFullPathsWorkingDirs(auditCmd.workingDirs)
 	if err != nil {
 		return
 	}
 	logScanPaths(workingDirs, isRecursiveScan)
+	return
+}
+
+func (auditCmd *AuditCommand) Run() (err error) {
+	workingDirs, isRecursiveScan, err := getRelatedWorkingDirs(auditCmd)
+	if err != nil {
+		return
+	}
 	serverDetails, err := auditCmd.ServerDetails()
 	if err != nil {
 		return
@@ -340,9 +348,7 @@ func getScanLogicOptions(params *AuditParams) (bomGenOptions []bom.SbomGenerator
 		// Build Info Bom Generator Options
 		buildinfo.WithParams(buildParams),
 		// Xray-Scan-Plugin Bom Generator Options
-		xrayplugin.WithTotalTargets(len(params.workingDirs)),
 		xrayplugin.WithBinaryPath(params.CustomBomGenBinaryPath()),
-		xrayplugin.WithIgnorePatterns(params.Exclusions()),
 	}
 	// Scan Strategies Options
 	scanGraphParams, err := params.ToXrayScanGraphParams()
@@ -421,6 +427,7 @@ func populateScanTargets(cmdResults *results.SecurityCommandResults, params *Aud
 		bom.GenerateSbomForTarget(params.BomGenerator().WithOptions(buildinfo.WithDescriptors(targetResult.GetDescriptors())),
 			bom.SbomGeneratorParams{
 				Target:               targetResult,
+				TotalTargets:         len(cmdResults.Targets),
 				AllowPartialResults:  params.AllowPartialResults(),
 				ScanResultsOutputDir: params.scanResultsOutputDir,
 				// Diff mode - SCA
@@ -493,11 +500,11 @@ func detectScanTargets(cmdResults *results.SecurityCommandResults, params *Audit
 			// No technology was detected, add scan without descriptors. (so no sca scan will be performed and set at target level)
 			if len(workingDirs) == 0 {
 				// Requested technology (from params) descriptors/indicators were not found or recursive scan with NoTech value, add scan without descriptors.
-				cmdResults.NewScanResults(results.ScanTarget{Target: requestedDirectory, Technology: tech})
+				cmdResults.NewScanResults(results.ScanTarget{Target: requestedDirectory, Technology: tech, Exclude: params.Exclusions()})
 			}
 			for workingDir, descriptors := range workingDirs {
 				// Add scan for each detected working directory.
-				targetResults := cmdResults.NewScanResults(results.ScanTarget{Target: workingDir, Technology: tech})
+				targetResults := cmdResults.NewScanResults(results.ScanTarget{Target: workingDir, Technology: tech, Exclude: params.Exclusions()})
 				if tech != techutils.NoTech {
 					targetResults.SetDescriptors(descriptors...)
 				}
diff --git a/sca/bom/bomgenerator.go b/sca/bom/bomgenerator.go
index 4d022fb2c..57214a4de 100644
--- a/sca/bom/bomgenerator.go
+++ b/sca/bom/bomgenerator.go
@@ -2,6 +2,7 @@ package bom
 
 import (
 	"fmt"
+	"time"
 
 	"github.com/CycloneDX/cyclonedx-go"
 
@@ -28,6 +29,7 @@ type SbomGeneratorOption func(sg SbomGenerator)
 
 type SbomGeneratorParams struct {
 	Target               *results.TargetResults
+	TotalTargets         int
 	AllowPartialResults  bool
 	ScanResultsOutputDir string
 
@@ -36,6 +38,12 @@ type SbomGeneratorParams struct {
 }
 
 func GenerateSbomForTarget(generator SbomGenerator, params SbomGeneratorParams) {
+	startLog := "Generating SBOM"
+	if params.TotalTargets > 1 {
+		startLog += fmt.Sprintf(" for target: %s", params.Target.Target)
+	}
+	log.Info(startLog + "...")
+	startTime := time.Now()
 	// Generate the SBOM for the target
 	sbom, err := generator.GenerateSbom(params.Target.ScanTarget)
 	if err != nil {
@@ -47,6 +55,9 @@ func GenerateSbomForTarget(generator SbomGenerator, params SbomGeneratorParams)
 		// If in diff mode, get the diff SBOM compared to the previous target result
 		sbom = getDiffSbom(sbom, params)
 	}
+	if err := logLibComponents(sbom, params.TotalTargets, params.Target.Target, startTime); err != nil {
+		log.Warn(fmt.Sprintf("Failed to log library components in SBOM for %s: %s", params.Target.Target, err.Error()))
+	}
 	// Set the SBOM in the target results and update target information
 	updateTarget(params.Target, sbom)
 	// Save the SBOM to a file
@@ -75,9 +86,6 @@ func getDiffSbom(sbom *cyclonedx.BOM, params SbomGeneratorParams) *cyclonedx.BOM
 func updateTarget(target *results.TargetResults, sbom *cyclonedx.BOM) {
 	target.SetSbom(sbom)
 	target.ResultsStatus.UpdateStatus(results.CmdStepSbom, utils.NewIntPtr(0))
-	if err := logLibComponents(sbom.Components); err != nil {
-		log.Warn(fmt.Sprintf("Failed to log library components in SBOM for %s: %s", target.Target, err.Error()))
-	}
 	if target.Name != "" {
 		// Target name is already set, no need to update.
 		return
@@ -104,21 +112,28 @@ func updateTarget(target *results.TargetResults, sbom *cyclonedx.BOM) {
 	target.Name, _, _ = techutils.SplitPackageURL(rootComponent.PackageURL)
 }
 
-func logLibComponents(components *[]cyclonedx.Component) (err error) {
-	if log.GetLogger().GetLogLevel() != log.DEBUG {
-		// Avoid printing and marshaling if not on DEBUG mode.
-		return
-	}
+func logLibComponents(output *cyclonedx.BOM, totalTargets int, target string, startTime time.Time) (err error) {
 	libs := []string{}
-	if components != nil {
-		for _, component := range *components {
+	if output != nil && output.Components != nil {
+		for _, component := range *output.Components {
 			if component.Type == cyclonedx.ComponentTypeLibrary {
 				libs = append(libs, techutils.PurlToXrayComponentId(component.PackageURL))
 			}
 		}
 	}
+	outLog := "SBOM generated"
+	if totalTargets > 1 {
+		outLog += fmt.Sprintf(" for target '%s'", target)
+	}
+	outLog += ";"
 	if len(libs) == 0 {
-		log.Debug("No library components found.")
+		outLog += " no library components were found"
+	} else {
+		outLog += fmt.Sprintf(" found %d library components", len(libs))
+	}
+	log.Info(fmt.Sprintf("%s (duration %s)", outLog, time.Since(startTime).String()))
+	if log.GetLogger().GetLogLevel() != log.DEBUG || len(libs) == 0 {
+		// Avoid printing and marshaling if not on DEBUG mode or no library components found.
 		return
 	}
 	// Log the unique library components in the SBOM.
diff --git a/sca/bom/xrayplugin/xraylibbom.go b/sca/bom/xrayplugin/xraylibbom.go
index 4e6dd5fb4..793e980e2 100644
--- a/sca/bom/xrayplugin/xraylibbom.go
+++ b/sca/bom/xrayplugin/xraylibbom.go
@@ -3,7 +3,6 @@ package xrayplugin
 import (
 	"fmt"
 	"os/exec"
-	"time"
 
 	"github.com/CycloneDX/cyclonedx-go"
 	"github.com/jfrog/jfrog-cli-security/sca/bom"
@@ -17,23 +16,12 @@ import (
 
 type XrayLibBomGenerator struct {
 	binaryPath     string
-	ignorePatterns []string
-	includeDirs    []string
-	totalTargets   int
 }
 
 func NewXrayLibBomGenerator() *XrayLibBomGenerator {
 	return &XrayLibBomGenerator{}
 }
 
-func WithTotalTargets(totalTargets int) bom.SbomGeneratorOption {
-	return func(sg bom.SbomGenerator) {
-		if sbg, ok := sg.(*XrayLibBomGenerator); ok {
-			sbg.totalTargets = totalTargets
-		}
-	}
-}
-
 func WithBinaryPath(binaryPath string) bom.SbomGeneratorOption {
 	return func(sg bom.SbomGenerator) {
 		if sbg, ok := sg.(*XrayLibBomGenerator); ok {
@@ -42,22 +30,6 @@ func WithBinaryPath(binaryPath string) bom.SbomGeneratorOption {
 	}
 }
 
-func WithIgnorePatterns(ignorePatterns []string) bom.SbomGeneratorOption {
-	return func(sg bom.SbomGenerator) {
-		if sbg, ok := sg.(*XrayLibBomGenerator); ok {
-			sbg.ignorePatterns = ignorePatterns
-		}
-	}
-}
-
-func WithIncludeDirs(includeDirs []string) bom.SbomGeneratorOption {
-	return func(sg bom.SbomGenerator) {
-		if sbg, ok := sg.(*XrayLibBomGenerator); ok {
-			sbg.includeDirs = includeDirs
-		}
-	}
-}
-
 func (sbg *XrayLibBomGenerator) WithOptions(options ...bom.SbomGeneratorOption) bom.SbomGenerator {
 	for _, option := range options {
 		option(sbg)
@@ -84,22 +56,15 @@ func (sbg *XrayLibBomGenerator) PrepareGenerator() (err error) {
 }
 
 func (sbg *XrayLibBomGenerator) GenerateSbom(target results.ScanTarget) (sbom *cyclonedx.BOM, err error) {
-	startLog := "Generating SBOM"
-	if sbg.totalTargets > 1 {
-		startLog += fmt.Sprintf(" for target: %s", target.Target)
-	}
-	log.Info(startLog + "...")
 	binaryPath, err := sbg.getXrayLibExecutablePath()
 	if err != nil || binaryPath == "" {
 		return nil, fmt.Errorf("failed to get local Xray-Lib executable path: %w", err)
 	}
 	log.Debug(fmt.Sprintf("Using Xray-Lib executable at: %s", binaryPath))
-	startTime := time.Now()
 	// Run the xray-lib command to generate the SBOM
 	if sbom, err = sbg.executeScanner(binaryPath, target); err != nil {
 		return nil, fmt.Errorf("failed to execute Xray-Lib command: %w", err)
 	}
-	sbg.logScannerOutput(sbom, target.Target, startTime)
 	return
 }
 
@@ -122,8 +87,8 @@ func (sbg *XrayLibBomGenerator) executeScanner(xrayLibBinary string, target resu
 		BomRef:         cdxutils.GetFileRef(target.Target),
 		Type:           string(cyclonedx.ComponentTypeFile),
 		Name:           target.Target,
-		IgnorePatterns: sbg.ignorePatterns,
-		IncludeDirs:    sbg.includeDirs,
+		IgnorePatterns: target.Exclude,
+		IncludeDirs:    target.Include,
 	}
 	if scanConfigStr, err := utils.GetAsJsonString(scanConfig, false, true); err == nil {
 		log.Debug(fmt.Sprintf("Scan configuration: %s", scanConfigStr))
@@ -131,28 +96,6 @@ func (sbg *XrayLibBomGenerator) executeScanner(xrayLibBinary string, target resu
 	return scanner.Scan(target.Target, scanConfig)
 }
 
-func (sbg *XrayLibBomGenerator) logScannerOutput(output *cyclonedx.BOM, target string, startTime time.Time) {
-	libComponents := []string{}
-	if output != nil && output.Components != nil {
-		for _, component := range *output.Components {
-			if component.Type == cyclonedx.ComponentTypeLibrary {
-				libComponents = append(libComponents, component.PackageURL)
-			}
-		}
-	}
-	outLog := "SBOM generated"
-	if sbg.totalTargets > 1 {
-		outLog += fmt.Sprintf(" for target '%s'", target)
-	}
-	outLog += ";"
-	if len(libComponents) == 0 {
-		outLog += " no library components were found"
-	} else {
-		outLog += fmt.Sprintf(" found %d library components", len(libComponents))
-	}
-	log.Info(fmt.Sprintf("%s (duration %s)", outLog, time.Since(startTime).String()))
-}
-
 func (sbg *XrayLibBomGenerator) CleanUp() (err error) {
 	// No cleanup needed for XrayLibBomGenerator
 	return nil
diff --git a/utils/results/results.go b/utils/results/results.go
index 9be9038bc..afd6fc718 100644
--- a/utils/results/results.go
+++ b/utils/results/results.go
@@ -212,6 +212,10 @@ type JasScanResults struct {
 type ScanTarget struct {
 	// Physical location of the target: Working directory (audit) / binary to scan (scan / docker scan)
 	Target string `json:"target,omitempty"`
+	// Optional field to provide the include patterns of the target
+	Include []string `json:"include,omitempty"`
+	// Optional field to provide the exclude patterns of the target
+	Exclude []string `json:"exclude,omitempty"`
 	// Logical name of the target (build name / module name / docker image name...)
 	Name string `json:"name,omitempty"`
 	// Optional field (not used only in build scan) to provide the technology of the target

From 26955ad1361877dea0accaba8f17d95d3b76ef6b Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Thu, 12 Feb 2026 16:22:17 +0200
Subject: [PATCH 03/26] format

---
 sca/bom/xrayplugin/xraylibbom.go | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sca/bom/xrayplugin/xraylibbom.go b/sca/bom/xrayplugin/xraylibbom.go
index 793e980e2..fb001fdc9 100644
--- a/sca/bom/xrayplugin/xraylibbom.go
+++ b/sca/bom/xrayplugin/xraylibbom.go
@@ -15,7 +15,7 @@ import (
 )
 
 type XrayLibBomGenerator struct {
-	binaryPath     string
+	binaryPath string
 }
 
 func NewXrayLibBomGenerator() *XrayLibBomGenerator {

From b00447458d144c65936345b550be2b4b07c318a3 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Thu, 12 Feb 2026 17:52:29 +0200
Subject: [PATCH 04/26] use isSingleTarget, start deprecate old JAS interface
 to remove apps-config in new flow

---
 commands/audit/audit.go                   | 48 ++++++++++++++++++-----
 commands/audit/auditparams.go             | 10 +++++
 jas/applicability/applicabilitymanager.go |  2 +-
 jas/common.go                             |  7 ++--
 jas/iac/iacscanner.go                     |  2 +-
 jas/runner/jasrunner.go                   |  6 +--
 jas/sast/sastscanner.go                   |  2 +-
 jas/secrets/secretsscanner.go             |  2 +-
 8 files changed, 59 insertions(+), 20 deletions(-)

diff --git a/commands/audit/audit.go b/commands/audit/audit.go
index 7ec00cc06..8f4e7aae0 100644
--- a/commands/audit/audit.go
+++ b/commands/audit/audit.go
@@ -176,12 +176,9 @@ func logScanPaths(workingDirs []string, isRecursiveScan bool) {
 	log.Info("Scanning paths:", strings.Join(workingDirs, ", "))
 }
 
-func getRelatedWorkingDirs(auditCmd *AuditCommand) (workingDirs []string, isRecursiveScan bool, err error) {
-	if _, ok := auditCmd.bomGenerator.(*xrayplugin.XrayLibBomGenerator); ok {
-		if len(auditCmd.workingDirs) > 1 {
-			return nil, false, errors.New("the 'audit' command with the 'Xray lib' BOM generator supports only one working directory. Please provide a single working directory")
-		}
-		// OLD logic:
+func getTargetsInfo(auditCmd *AuditCommand) (workingDirs []string, isRecursiveScan, isSingleTarget bool, err error) {
+	if isNewFlow(auditCmd.bomGenerator) {
+		isSingleTarget = true
 	} else if utils.IsScanRequested(utils.SourceCode, utils.ScaScan, auditCmd.ScansToPerform()...) || auditCmd.IncludeSbom {
 		// Only in case of SCA scan / SBOM requested and if no workingDirs were provided by the user
 		// We apply a recursive scan on the root repository
@@ -195,8 +192,15 @@ func getRelatedWorkingDirs(auditCmd *AuditCommand) (workingDirs []string, isRecu
 	return
 }
 
+func isNewFlow(bomGenerator bom.SbomGenerator) bool {
+	if _, ok := bomGenerator.(*xrayplugin.XrayLibBomGenerator); ok {
+		return true
+	}
+	return false
+}
+
 func (auditCmd *AuditCommand) Run() (err error) {
-	workingDirs, isRecursiveScan, err := getRelatedWorkingDirs(auditCmd)
+	workingDirs, isRecursiveScan, isSingleTarget, err := getTargetsInfo(auditCmd)
 	if err != nil {
 		return
 	}
@@ -222,9 +226,10 @@ func (auditCmd *AuditCommand) Run() (err error) {
 		SetRtResultRepository(auditCmd.rtResultRepository).
 		SetUploadCdxResults(auditCmd.uploadCdxResults).
 		SetWorkingDirs(workingDirs).
+		SetIsSingleTarget(isSingleTarget).
 		SetMinSeverityFilter(auditCmd.minSeverityFilter).
 		SetFixableOnly(auditCmd.fixableOnly).
-		SetGraphBasicParams(auditCmd.AuditBasicParams).
+		SetGraphBasicParams(auditCmd.AuditBasicParams.SetIsRecursiveScan(isRecursiveScan).SetExclusions(auditCmd.Exclusions())).
 		SetResultsContext(CreateAuditResultsContext(
 			serverDetails,
 			auditCmd.GetXrayVersion(),
@@ -239,8 +244,9 @@ func (auditCmd *AuditCommand) Run() (err error) {
 		SetGitContext(auditCmd.GitContext()).
 		SetThirdPartyApplicabilityScan(auditCmd.thirdPartyApplicabilityScan).
 		SetThreads(auditCmd.Threads).
-		SetScansResultsOutputDir(auditCmd.scanResultsOutputDir).SetStartTime(startTime).SetMultiScanId(multiScanId)
-	auditParams.SetIsRecursiveScan(isRecursiveScan).SetExclusions(auditCmd.Exclusions())
+		SetScansResultsOutputDir(auditCmd.scanResultsOutputDir).
+		SetStartTime(startTime).
+		SetMultiScanId(multiScanId)
 
 	auditResults := RunAudit(auditParams)
 
@@ -439,6 +445,7 @@ func populateScanTargets(cmdResults *results.SecurityCommandResults, params *Aud
 	logScanTargetsInfo(cmdResults)
 }
 
+// TODO: change
 func logScanTargetsInfo(cmdResults *results.SecurityCommandResults) {
 	// Print the scan targets
 	if len(cmdResults.Targets) == 1 {
@@ -478,7 +485,28 @@ func getTargetResultsToCompare(cmdResults, resultsToCompare *results.SecurityCom
 	return
 }
 
+//TODO: change
 func detectScanTargets(cmdResults *results.SecurityCommandResults, params *AuditParams) {
+	if params.IsSingleTarget() {
+		// NEW logic:
+		scanTarget := results.ScanTarget{Exclude: params.Exclusions()}
+		dirs := []string{}
+		for _, dir := range params.workingDirs {
+			if !fileutils.IsPathExists(dir, false) {
+				log.Warn("The working directory", dir, "doesn't exist. Skipping SCA scan...")
+				continue
+			}
+			dirs = append(dirs, dir)
+		}
+		if len(dirs) == 1 {
+			scanTarget.Target = dirs[0]
+		} else {
+			scanTarget.Include = dirs
+		}
+		cmdResults.NewScanResults(scanTarget)
+		return
+	}
+	// OLD logic:
 	for _, requestedDirectory := range params.workingDirs {
 		if !fileutils.IsPathExists(requestedDirectory, false) {
 			log.Warn("The working directory", requestedDirectory, "doesn't exist. Skipping SCA scan...")
diff --git a/commands/audit/auditparams.go b/commands/audit/auditparams.go
index c75da1790..332362a42 100644
--- a/commands/audit/auditparams.go
+++ b/commands/audit/auditparams.go
@@ -22,6 +22,7 @@ type AuditParams struct {
 	resultsContext    results.ResultContext
 	gitContext        *xscServices.XscGitInfoContext
 	workingDirs       []string
+	isSingleTarget    bool
 	installFunc       func(tech string) error
 	fixableOnly       bool
 	minSeverityFilter severityutils.Severity
@@ -192,6 +193,15 @@ func (params *AuditParams) SetScansResultsOutputDir(outputDir string) *AuditPara
 	return params
 }
 
+func (params *AuditParams) SetIsSingleTarget(isSingleTarget bool) *AuditParams {
+	params.isSingleTarget = isSingleTarget
+	return params
+}
+
+func (params *AuditParams) IsSingleTarget() bool {
+	return params.isSingleTarget
+}
+
 func (params *AuditParams) createXrayGraphScanParams() *services.XrayGraphScanParams {
 	return &services.XrayGraphScanParams{
 		RepoPath:               params.resultsContext.RepoPath,
diff --git a/jas/applicability/applicabilitymanager.go b/jas/applicability/applicabilitymanager.go
index 810038fff..870b117f8 100644
--- a/jas/applicability/applicabilitymanager.go
+++ b/jas/applicability/applicabilitymanager.go
@@ -87,7 +87,7 @@ func newApplicabilityScanManager(directDependenciesCves, indirectDependenciesCve
 	}
 }
 
-func (asm *ApplicabilityScanManager) Run(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+func (asm *ApplicabilityScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
 	if err = asm.createConfigFile(module, asm.scanner.ScannersExclusions.ContextualAnalysisExcludePatterns, asm.scanner.Exclusions...); err != nil {
 		return
 	}
diff --git a/jas/common.go b/jas/common.go
index 07693d056..10d47139f 100644
--- a/jas/common.go
+++ b/jas/common.go
@@ -148,9 +148,9 @@ func (js *JasScanner) GetResultsToCompareByRelativePath(relativeTarget string) (
 
 func CreateJFrogAppsConfig(workingDirs []string) (*jfrogappsconfig.JFrogAppsConfig, error) {
 	if jfrogAppsConfig, err := jfrogappsconfig.LoadConfigIfExist(); err != nil {
-		log.Warn("Please note the 'jfrog-apps-config.yml' is soon to be deprecated. Please consider using flags, environment variables, or centrally via the JFrog platform.")
 		return nil, errorutils.CheckError(err)
 	} else if jfrogAppsConfig != nil {
+		log.Warn("Please note the 'jfrog-apps-config.yml' is soon to be deprecated. Please consider using flags, environment variables, or centrally via the JFrog platform.")
 		// jfrog-apps-config.yml exist in the workspace
 		for i := range jfrogAppsConfig.Modules {
 			// converting to absolute path before starting the scan flow
@@ -175,12 +175,13 @@ func CreateJFrogAppsConfig(workingDirs []string) (*jfrogappsconfig.JFrogAppsConf
 }
 
 type ScannerCmd interface {
-	Run(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error)
+	DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error)
+	// Run(target results.ScanTarget) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error)
 }
 
 func (a *JasScanner) Run(scannerCmd ScannerCmd, module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
 	func() {
-		if vulnerabilitiesSarifRuns, violationsSarifRuns, err = scannerCmd.Run(module); err != nil {
+		if vulnerabilitiesSarifRuns, violationsSarifRuns, err = scannerCmd.DeprecatedRun(module); err != nil {
 			return
 		}
 	}()
diff --git a/jas/iac/iacscanner.go b/jas/iac/iacscanner.go
index 53eeb921b..3bede78d5 100644
--- a/jas/iac/iacscanner.go
+++ b/jas/iac/iacscanner.go
@@ -69,7 +69,7 @@ func newIacScanManager(scanner *jas.JasScanner, scannerTempDir string, resultsTo
 	return
 }
 
-func (iac *IacScanManager) Run(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+func (iac *IacScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
 	if err = iac.createConfigFile(module, iac.scanner.ScannersExclusions.IacExcludePatterns, iac.scanner.Exclusions...); err != nil {
 		return
 	}
diff --git a/jas/runner/jasrunner.go b/jas/runner/jasrunner.go
index c88692450..478c01bab 100644
--- a/jas/runner/jasrunner.go
+++ b/jas/runner/jasrunner.go
@@ -26,9 +26,11 @@ type JasRunnerParams struct {
 	Runner        *utils.SecurityParallelRunner
 	ServerDetails *config.ServerDetails
 	Scanner       *jas.JasScanner
-	// Module flags
+	// Module / Target flags
 	Module        jfrogappsconfig.Module
 	ConfigProfile *services.ConfigProfile
+	TargetCount   int
+	ScanResults   *results.TargetResults
 	// Scan flags
 	AllowPartialResults bool
 	ScansToPerform      []utils.SubScanType
@@ -45,8 +47,6 @@ type JasRunnerParams struct {
 	SignedDescriptions bool
 	SastRules          string
 	// Outputs
-	TargetCount     int
-	ScanResults     *results.TargetResults
 	TargetOutputDir string
 }
 
diff --git a/jas/sast/sastscanner.go b/jas/sast/sastscanner.go
index f6d0a213e..e06657b27 100644
--- a/jas/sast/sastscanner.go
+++ b/jas/sast/sastscanner.go
@@ -68,7 +68,7 @@ func newSastScanManager(scanner *jas.JasScanner, scannerTempDir string, signedDe
 	return
 }
 
-func (ssm *SastScanManager) Run(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+func (ssm *SastScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
 	if err = ssm.createConfigFile(module, ssm.signedDescriptions, ssm.scanner.ScannersExclusions.SastExcludePatterns, ssm.scanner.Exclusions...); err != nil {
 		return
 	}
diff --git a/jas/secrets/secretsscanner.go b/jas/secrets/secretsscanner.go
index 1565ebd39..b255176b7 100644
--- a/jas/secrets/secretsscanner.go
+++ b/jas/secrets/secretsscanner.go
@@ -74,7 +74,7 @@ func newSecretsScanManager(scanner *jas.JasScanner, scanType SecretsScanType, sc
 	return
 }
 
-func (ssm *SecretScanManager) Run(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+func (ssm *SecretScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
 	if err = ssm.createConfigFile(module, ssm.scanner.ScannersExclusions.SecretsExcludePatterns, ssm.scanner.Exclusions...); err != nil {
 		return
 	}

From d64198518cecd283ee939ce68ade59fecdb37d41 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Fri, 13 Feb 2026 01:53:15 +0200
Subject: [PATCH 05/26] deprecate JAS apps config module, use scan target

---
 commands/audit/audit.go                       | 22 +++---
 commands/scan/scan.go                         |  2 +-
 jas/applicability/applicabilitymanager.go     | 56 +++++++++++++--
 .../applicabilitymanager_test.go              | 30 +++++++-
 jas/common.go                                 | 54 +++++++++-----
 jas/common_test.go                            | 15 ++--
 jas/iac/iacscanner.go                         | 59 ++++++++++++---
 jas/iac/iacscanner_test.go                    | 37 +++++++++-
 jas/maliciouscode/maliciouscodescanner.go     |  2 +-
 .../maliciouscodescanner_test.go              |  4 +-
 jas/runner/jasrunner.go                       | 58 ++++++++++-----
 jas/runner/jasrunner_test.go                  | 22 +++++-
 jas/sast/sastscanner.go                       | 71 ++++++++++++++++---
 jas/sast/sastscanner_test.go                  |  4 +-
 jas/secrets/secretsscanner.go                 | 60 +++++++++++++---
 jas/secrets/secretsscanner_test.go            | 45 ++++++++++--
 16 files changed, 440 insertions(+), 101 deletions(-)

diff --git a/commands/audit/audit.go b/commands/audit/audit.go
index 8f4e7aae0..f655d1ec5 100644
--- a/commands/audit/audit.go
+++ b/commands/audit/audit.go
@@ -485,7 +485,7 @@ func getTargetResultsToCompare(cmdResults, resultsToCompare *results.SecurityCom
 	return
 }
 
-//TODO: change
+// TODO: change
 func detectScanTargets(cmdResults *results.SecurityCommandResults, params *AuditParams) {
 	if params.IsSingleTarget() {
 		// NEW logic:
@@ -561,10 +561,7 @@ func runParallelAuditScans(cmdResults *results.SecurityCommandResults, auditPara
 		auditParams.Progress().SetHeadlineMsg("Scanning for issues")
 	}
 	// TODO: remove "isNewFlow" once the old flow is fully deprecated.
-	isNewFlow := true
-	if _, ok := auditParams.scaScanStrategy.(*scanGraphStrategy.ScanGraphStrategy); ok {
-		isNewFlow = false
-	}
+	isNewFlow := isNewFlow(auditParams.bomGenerator)
 	// Add the scans to the parallel runner
 	if jasScanner, generalJasScanErr = addJasScansToRunner(auditParallelRunner, auditParams, cmdResults, isNewFlow); generalJasScanErr != nil {
 		cmdResults.AddGeneralError(fmt.Errorf("error has occurred during JAS scan process. JAS scan is skipped for the following directories: %s\n%s", strings.Join(cmdResults.GetTargetsPaths(), ","), generalJasScanErr.Error()), auditParams.AllowPartialResults())
@@ -654,7 +651,7 @@ func addJasScansToRunner(auditParallelRunner *utils.SecurityParallelRunner, audi
 		return
 	}
 	auditParallelRunner.JasWg.Add(1)
-	if _, jasErr := auditParallelRunner.Runner.AddTaskWithError(createJasScansTask(auditParallelRunner, scanResults, serverDetails, auditParams, jasScanner), func(taskErr error) {
+	if _, jasErr := auditParallelRunner.Runner.AddTaskWithError(createJasScansTask(auditParallelRunner, scanResults, serverDetails, auditParams, jasScanner, isNewFlow), func(taskErr error) {
 		scanResults.AddGeneralError(fmt.Errorf("failed while adding JAS scan tasks: %s", taskErr.Error()), auditParams.AllowPartialResults())
 	}); jasErr != nil {
 		generalError = fmt.Errorf("failed to create JAS task: %s", jasErr.Error())
@@ -663,7 +660,7 @@ func addJasScansToRunner(auditParallelRunner *utils.SecurityParallelRunner, audi
 }
 
 func createJasScansTask(auditParallelRunner *utils.SecurityParallelRunner, scanResults *results.SecurityCommandResults,
-	serverDetails *config.ServerDetails, auditParams *AuditParams, scanner *jas.JasScanner) parallel.TaskFunc {
+	serverDetails *config.ServerDetails, auditParams *AuditParams, scanner *jas.JasScanner, isNewFlow bool) parallel.TaskFunc {
 	return func(threadId int) (generalError error) {
 		defer func() {
 			auditParallelRunner.JasWg.Done()
@@ -684,15 +681,18 @@ func createJasScansTask(auditParallelRunner *utils.SecurityParallelRunner, scanR
 		// Run JAS scanners for each scan target
 		for _, targetResult := range scanResults.Targets {
 			if targetResult.AppsConfigModule == nil {
-				_ = targetResult.AddTargetError(fmt.Errorf("can't find module for path %s", targetResult.Target), auditParams.AllowPartialResults())
-				continue
+				if !isNewFlow {
+					log.Debug(fmt.Sprintf("can't find apps config module for path %s", targetResult.Target))
+				} else {
+					_ = targetResult.AddTargetError(fmt.Errorf("can't find module for path %s", targetResult.Target), auditParams.AllowPartialResults())
+					continue
+				}
 			}
-			appsConfigModule := *targetResult.AppsConfigModule
 			params := runner.JasRunnerParams{
 				Runner:                 auditParallelRunner,
 				ServerDetails:          serverDetails,
 				Scanner:                scanner,
-				Module:                 appsConfigModule,
+				Module:                 targetResult.AppsConfigModule,
 				ConfigProfile:          auditParams.GetConfigProfile(),
 				ScansToPerform:         auditParams.ScansToPerform(),
 				SourceResultsToCompare: scanner.GetResultsToCompareByRelativePath(utils.GetRelativePath(targetResult.Target, scanResults.GetCommonParentPath())),
diff --git a/commands/scan/scan.go b/commands/scan/scan.go
index 7ebfa8747..dc0f2dc6e 100644
--- a/commands/scan/scan.go
+++ b/commands/scan/scan.go
@@ -591,7 +591,7 @@ func (scanCmd *ScanCommand) RunBinaryJasScans(cmdType utils.CommandType, msi str
 		Runner:          jasFileProducerConsumer,
 		ServerDetails:   scanCmd.serverDetails,
 		Scanner:         scanner,
-		Module:          module,
+		Module:          &module,
 		TargetOutputDir: scanCmd.outputDir,
 		ScansToPerform:  scanCmd.scansToPerform,
 		CvesProvider: func() (directCves []string, indirectCves []string) {
diff --git a/jas/applicability/applicabilitymanager.go b/jas/applicability/applicabilitymanager.go
index 870b117f8..74a233e1a 100644
--- a/jas/applicability/applicabilitymanager.go
+++ b/jas/applicability/applicabilitymanager.go
@@ -10,6 +10,7 @@ import (
 	"github.com/jfrog/jfrog-cli-security/utils"
 	"github.com/jfrog/jfrog-cli-security/utils/formats/sarifutils"
 	"github.com/jfrog/jfrog-cli-security/utils/jasutils"
+	"github.com/jfrog/jfrog-cli-security/utils/results"
 	clientutils "github.com/jfrog/jfrog-client-go/utils"
 	"github.com/jfrog/jfrog-client-go/utils/log"
 	"github.com/owenrumney/go-sarif/v3/pkg/report/v210/sarif"
@@ -44,7 +45,8 @@ type ContextualAnalysisScanParams struct {
 	ThirdPartyContextualAnalysis bool
 	ThreadId                     int
 	TargetCount                  int
-	Module                       jfrogappsconfig.Module
+	Module                       *jfrogappsconfig.Module
+	Target                       results.ScanTarget
 }
 
 // The getApplicabilityScanResults function runs the applicability scan flow, which includes the following steps:
@@ -64,8 +66,7 @@ func RunApplicabilityScan(params ContextualAnalysisScanParams, scanner *jas.JasS
 	}
 	startTime := time.Now()
 	log.Info(jas.GetStartJasScanLog(utils.ContextualAnalysisScan, params.ThreadId, params.Module, params.TargetCount))
-	// Applicability scan does not produce violations.
-	if results, _, err = applicabilityScanManager.scanner.Run(applicabilityScanManager, params.Module); err != nil {
+	if results, err = runApplicabilityScan(applicabilityScanManager, params); err != nil {
 		return
 	}
 	applicableCveCount := sarifutils.GetRulesPropertyCount("applicability", "applicable", results...)
@@ -75,6 +76,17 @@ func RunApplicabilityScan(params ContextualAnalysisScanParams, scanner *jas.JasS
 	return
 }
 
+func runApplicabilityScan(applicabilityScanManager *ApplicabilityScanManager, params ContextualAnalysisScanParams) (vulnerabilitiesSarifRuns []*sarif.Run, err error) {
+	if params.Module == nil {
+		// Applicability scan does not produce violations.
+		vulnerabilitiesSarifRuns, _, err = applicabilityScanManager.scanner.Run(applicabilityScanManager, params.Target)
+		return
+	}
+	// Applicability scan does not produce violations.
+	vulnerabilitiesSarifRuns, _, err = applicabilityScanManager.scanner.DeprecatedRun(applicabilityScanManager, *params.Module)
+	return
+}
+
 func newApplicabilityScanManager(directDependenciesCves, indirectDependenciesCves []string, scanner *jas.JasScanner, thirdPartyScan bool, scanType ApplicabilityScanType, scannerTempDir string) (manager *ApplicabilityScanManager) {
 	return &ApplicabilityScanManager{
 		directDependenciesCves:   directDependenciesCves,
@@ -88,13 +100,23 @@ func newApplicabilityScanManager(directDependenciesCves, indirectDependenciesCve
 }
 
 func (asm *ApplicabilityScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
-	if err = asm.createConfigFile(module, asm.scanner.ScannersExclusions.ContextualAnalysisExcludePatterns, asm.scanner.Exclusions...); err != nil {
+	if err = asm.deprecatedCreateConfigFile(module, asm.scanner.ScannersExclusions.ContextualAnalysisExcludePatterns, asm.scanner.Exclusions...); err != nil {
 		return
 	}
 	if err = asm.runAnalyzerManager(); err != nil {
 		return
 	}
-	return jas.ReadJasScanRunsFromFile(asm.resultsFileName, module.SourceRoot, applicabilityDocsUrlSuffix, asm.scanner.MinSeverity)
+	return jas.ReadJasScanRunsFromFile(asm.resultsFileName, applicabilityDocsUrlSuffix, asm.scanner.MinSeverity, module.SourceRoot)
+}
+
+func (asm *ApplicabilityScanManager) Run(target results.ScanTarget) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+	if err = asm.createConfigFileForTarget(target, asm.scanner.ScannersExclusions.ContextualAnalysisExcludePatterns); err != nil {
+		return
+	}
+	if err = asm.runAnalyzerManager(); err != nil {
+		return
+	}
+	return jas.ReadJasScanRunsFromFile(asm.resultsFileName, applicabilityDocsUrlSuffix, asm.scanner.MinSeverity, target.Include...)
 }
 
 func (asm *ApplicabilityScanManager) cvesExists() bool {
@@ -116,7 +138,29 @@ type scanConfiguration struct {
 	ScanType             string   `yaml:"scantype"`
 }
 
-func (asm *ApplicabilityScanManager) createConfigFile(module jfrogappsconfig.Module, centralConfigExclusions []string, exclusions ...string) error {
+func (asm *ApplicabilityScanManager) createConfigFileForTarget(target results.ScanTarget, centralConfigExclusions []string) error {
+	excludePatterns := jas.GetExcludePatternsForTarget(target, centralConfigExclusions)
+	if asm.thirdPartyScan {
+		log.Info("Including node modules folder in applicability scan")
+		excludePatterns = removeElementFromSlice(excludePatterns, utils.NodeModulesPattern)
+	}
+	configFileContent := applicabilityScanConfig{
+		Scans: []scanConfiguration{
+			{
+				Roots:                target.Include,
+				Output:               asm.resultsFileName,
+				Type:                 asm.commandType,
+				GrepDisable:          false,
+				CveWhitelist:         asm.directDependenciesCves,
+				IndirectCveWhitelist: asm.indirectDependenciesCves,
+				SkippedDirs:          excludePatterns,
+			},
+		},
+	}
+	return jas.CreateScannersConfigFile(asm.configFileName, configFileContent, jasutils.Applicability)
+}
+
+func (asm *ApplicabilityScanManager) deprecatedCreateConfigFile(module jfrogappsconfig.Module, centralConfigExclusions []string, exclusions ...string) error {
 	roots, err := jas.GetSourceRoots(module, nil)
 	if err != nil {
 		return err
diff --git a/jas/applicability/applicabilitymanager_test.go b/jas/applicability/applicabilitymanager_test.go
index 5d3286512..fb71ab371 100644
--- a/jas/applicability/applicabilitymanager_test.go
+++ b/jas/applicability/applicabilitymanager_test.go
@@ -163,7 +163,7 @@ func TestNewApplicabilityScanManager_VulnerabilitiesDontExist(t *testing.T) {
 	}
 }
 
-func TestCreateConfigFile_VerifyFileWasCreated(t *testing.T) {
+func TestApplicabilityScan_CreateDeprecatedConfigFile_VerifyFileWasCreated(t *testing.T) {
 	// Arrange
 	scanner, cleanUp := jas.InitJasTest(t)
 	defer cleanUp()
@@ -175,7 +175,7 @@ func TestCreateConfigFile_VerifyFileWasCreated(t *testing.T) {
 
 	currWd, err := coreutils.GetWorkingDirectory()
 	assert.NoError(t, err)
-	err = applicabilityManager.createConfigFile(jfrogappsconfig.Module{SourceRoot: currWd}, []string{})
+	err = applicabilityManager.deprecatedCreateConfigFile(jfrogappsconfig.Module{SourceRoot: currWd}, []string{})
 	assert.NoError(t, err)
 
 	defer func() {
@@ -190,6 +190,30 @@ func TestCreateConfigFile_VerifyFileWasCreated(t *testing.T) {
 	assert.True(t, len(fileContent) > 0)
 }
 
+func TestApplicabilityScan_CreateConfigFile_VerifyFileWasCreated(t *testing.T) {
+	scanner, cleanUp := jas.InitJasTest(t)
+	defer cleanUp()
+	scannerTempDir, err := jas.CreateScannerTempDirectory(scanner, jasutils.Applicability.String(), 0)
+	require.NoError(t, err)
+	directCves, indirectCves := results.ExtractCvesFromScanResponse(jas.FakeBasicXrayResults, mockDirectDependencies)
+	applicabilityManager := newApplicabilityScanManager(directCves, indirectCves, scanner, false, ApplicabilityScannerType, scannerTempDir)
+
+	currWd, err := coreutils.GetWorkingDirectory()
+	assert.NoError(t, err)
+	assert.NoError(t, applicabilityManager.createConfigFileForTarget(results.ScanTarget{Target: currWd}, []string{}))
+
+	defer func() {
+		err = os.Remove(applicabilityManager.configFileName)
+		assert.NoError(t, err)
+	}()
+
+	_, fileNotExistError := os.Stat(applicabilityManager.configFileName)
+	assert.NoError(t, fileNotExistError)
+	fileContent, err := os.ReadFile(applicabilityManager.configFileName)
+	assert.NoError(t, err)
+	assert.True(t, len(fileContent) > 0)
+}
+
 func TestParseResults_NewApplicabilityStatuses(t *testing.T) {
 	testCases := []struct {
 		name                          string
@@ -236,7 +260,7 @@ func TestParseResults_NewApplicabilityStatuses(t *testing.T) {
 	for _, tc := range testCases {
 		t.Run(tc.name, func(t *testing.T) {
 			applicabilityManager.resultsFileName = filepath.Join(jas.GetTestDataPath(), "applicability-scan", tc.fileName)
-			vulnerabilitiesResults, _, innerErr := jas.ReadJasScanRunsFromFile(applicabilityManager.resultsFileName, jfrogAppsConfigForTest.Modules[0].SourceRoot, applicabilityDocsUrlSuffix, scanner.MinSeverity)
+			vulnerabilitiesResults, _, innerErr := jas.ReadJasScanRunsFromFile(applicabilityManager.resultsFileName, applicabilityDocsUrlSuffix, scanner.MinSeverity, jfrogAppsConfigForTest.Modules[0].SourceRoot)
 			if assert.NoError(t, innerErr) && assert.NotNil(t, vulnerabilitiesResults) {
 				assert.Len(t, vulnerabilitiesResults, 1)
 				assert.Len(t, vulnerabilitiesResults[0].Results, tc.expectedResults)
diff --git a/jas/common.go b/jas/common.go
index 10d47139f..c6a66fd3f 100644
--- a/jas/common.go
+++ b/jas/common.go
@@ -176,10 +176,10 @@ func CreateJFrogAppsConfig(workingDirs []string) (*jfrogappsconfig.JFrogAppsConf
 
 type ScannerCmd interface {
 	DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error)
-	// Run(target results.ScanTarget) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error)
+	Run(target results.ScanTarget) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error)
 }
 
-func (a *JasScanner) Run(scannerCmd ScannerCmd, module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+func (a *JasScanner) DeprecatedRun(scannerCmd ScannerCmd, module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
 	func() {
 		if vulnerabilitiesSarifRuns, violationsSarifRuns, err = scannerCmd.DeprecatedRun(module); err != nil {
 			return
@@ -188,7 +188,11 @@ func (a *JasScanner) Run(scannerCmd ScannerCmd, module jfrogappsconfig.Module) (
 	return
 }
 
-func ReadJasScanRunsFromFile(fileName, wd, informationUrlSuffix string, minSeverity severityutils.Severity) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+func (a *JasScanner) Run(scannerCmd ScannerCmd, target results.ScanTarget) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+	return scannerCmd.Run(target)
+}
+
+func ReadJasScanRunsFromFile(fileName, informationUrlSuffix string, minSeverity severityutils.Severity, workingDirs ...string) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
 	violationFileName := fmt.Sprintf("%s_violations.sarif", strings.TrimSuffix(fileName, ".sarif"))
 	vulnFileExist, violationsFileExist, err := checkJasResultsFilesExist(fileName, violationFileName)
 	if err != nil {
@@ -199,13 +203,13 @@ func ReadJasScanRunsFromFile(fileName, wd, informationUrlSuffix string, minSever
 		return
 	}
 	if vulnFileExist {
-		vulnerabilitiesSarifRuns, err = readJasScanRunsFromFile(fileName, wd, informationUrlSuffix, minSeverity)
+		vulnerabilitiesSarifRuns, err = readJasScanRunsFromFile(fileName, informationUrlSuffix, minSeverity, workingDirs...)
 		if err != nil {
 			return
 		}
 	}
 	if violationsFileExist {
-		violationsSarifRuns, err = readJasScanRunsFromFile(violationFileName, wd, informationUrlSuffix, minSeverity)
+		violationsSarifRuns, err = readJasScanRunsFromFile(violationFileName, informationUrlSuffix, minSeverity, workingDirs...)
 	}
 	return
 }
@@ -220,18 +224,18 @@ func checkJasResultsFilesExist(vulnFileName, violationsFileName string) (vulnFil
 	return
 }
 
-func readJasScanRunsFromFile(fileName, wd, informationUrlSuffix string, minSeverity severityutils.Severity) (sarifRuns []*sarif.Run, err error) {
+func readJasScanRunsFromFile(fileName, informationUrlSuffix string, minSeverity severityutils.Severity, workingDirs ...string) (sarifRuns []*sarif.Run, err error) {
 	if sarifRuns, err = sarifutils.ReadScanRunsFromFile(fileName); err != nil {
 		return
 	}
-	processSarifRuns(sarifRuns, wd, informationUrlSuffix, minSeverity)
+	processSarifRuns(sarifRuns, informationUrlSuffix, minSeverity, workingDirs...)
 	return
 }
 
 // This function processes the Sarif runs results: update invocations, fill missing information, exclude results and adding scores to rules
-func processSarifRuns(sarifRuns []*sarif.Run, wd string, informationUrlSuffix string, minSeverity severityutils.Severity) {
+func processSarifRuns(sarifRuns []*sarif.Run, informationUrlSuffix string, minSeverity severityutils.Severity, workingDirs ...string) {
 	for _, sarifRun := range sarifRuns {
-		fillMissingRequiredInvocationInformation(wd, sarifRun)
+		fillMissingRequiredInvocationInformation(sarifRun, workingDirs...)
 		fillMissingRequiredDriverInformation(utils.BaseDocumentationURL+informationUrlSuffix, GetAnalyzerManagerVersion(), sarifRun)
 		addScoreToRunRules(sarifRun)
 		// Process results
@@ -259,15 +263,15 @@ func isValidVersion(version string) bool {
 	return unicode.IsDigit(firstChar)
 }
 
-func fillMissingRequiredInvocationInformation(wd string, run *sarif.Run) {
-	// If no invocations are present, add an empty invocation with an empty working directory
-	if len(run.Invocations) == 0 {
-		run.Invocations = append(run.Invocations, sarif.NewInvocation().WithWorkingDirectory(sarif.NewArtifactLocation()))
-	}
+func fillMissingRequiredInvocationInformation(run *sarif.Run, workingDirs ...string) {
+	isExeSuccess := false
 	for _, invocation := range run.Invocations {
+		isExeSuccess = isExeSuccess || (invocation.ExecutionSuccessful != nil && *invocation.ExecutionSuccessful)
+	}
+	invocations := []*sarif.Invocation{}
+	for _, wd := range workingDirs {
 		// Set the actual working directory to the invocation, not the analyzerManager directory
-		// Also used to calculate relative paths if needed with it
-		invocation.WorkingDirectory.WithURI(utils.ToURI(wd))
+		invocation := sarif.NewInvocation().WithExecutionSuccessful(isExeSuccess).WithWorkingDirectory(sarif.NewArtifactLocation().WithURI(utils.ToURI(wd)))
 		// Make sure the invocation not omitted attributes are set (the lib reports them as required but spec says they are optional)
 		if len(invocation.NotificationConfigurationOverrides) == 0 {
 			invocation.NotificationConfigurationOverrides = make([]*sarif.ConfigurationOverride, 0)
@@ -281,7 +285,9 @@ func fillMissingRequiredInvocationInformation(wd string, run *sarif.Run) {
 		if len(invocation.ToolExecutionNotifications) == 0 {
 			invocation.ToolExecutionNotifications = make([]*sarif.Notification, 0)
 		}
+		invocations = append(invocations, invocation)
 	}
+	run.Invocations = invocations
 }
 
 func excludeSuppressResults(sarifResults []*sarif.Result) []*sarif.Result {
@@ -398,7 +404,10 @@ func GetModule(root string, appConfig *jfrogappsconfig.JFrogAppsConfig) *jfrogap
 	return nil
 }
 
-func ShouldSkipScanner(module jfrogappsconfig.Module, scanType jasutils.JasScanType) bool {
+func ShouldSkipScanner(module *jfrogappsconfig.Module, scanType jasutils.JasScanType) bool {
+	if module == nil {
+		return false
+	}
 	lowerScanType := strings.ToLower(string(scanType))
 	if slices.Contains(module.ExcludeScanners, lowerScanType) {
 		log.Info(fmt.Sprintf("Skipping %s scanning", scanType))
@@ -442,6 +451,13 @@ func GetExcludePatterns(module jfrogappsconfig.Module, scanner *jfrogappsconfig.
 	return uniqueExcludePatterns.ToSlice()
 }
 
+func GetExcludePatternsForTarget(target results.ScanTarget, centralConfigExclusions []string) []string {
+	uniqueExcludePatterns := datastructures.MakeSet[string]()
+	uniqueExcludePatterns.AddElements(centralConfigExclusions...)
+	uniqueExcludePatterns.AddElements(convertToFilesExcludePatterns(target.Exclude)...)
+	return uniqueExcludePatterns.ToSlice()
+}
+
 // This function convert every exclude pattern to a file exclude pattern form.
 // Checks are being made since some of the exclude patters we get here might already be in a file exclude pattern
 func convertToFilesExcludePatterns(excludePatterns []string) (converted []string) {
@@ -522,9 +538,9 @@ func UpdateJasScannerWithExcludePatternsFromProfile(scanner *JasScanner, profile
 	scanner.ScannersExclusions.IacExcludePatterns = profile.Modules[0].ScanConfig.IacScannerConfig.ExcludePatterns
 }
 
-func GetStartJasScanLog(scanType utils.SubScanType, threadId int, module jfrogappsconfig.Module, targetCount int) string {
+func GetStartJasScanLog(scanType utils.SubScanType, threadId int, module *jfrogappsconfig.Module, targetCount int) string {
 	outLog := goclientutils.GetLogMsgPrefix(threadId, false) + fmt.Sprintf("Running %s scan", scanType.ToTextString())
-	if targetCount != 1 {
+	if targetCount != 1 && module != nil {
 		outLog += fmt.Sprintf(" on target '%s'...", module.SourceRoot)
 	} else {
 		outLog += "..."
diff --git a/jas/common_test.go b/jas/common_test.go
index 56f3a61d1..a5042e572 100644
--- a/jas/common_test.go
+++ b/jas/common_test.go
@@ -69,11 +69,18 @@ func TestCreateJFrogAppsConfigWithConfig(t *testing.T) {
 
 func TestShouldSkipScanner(t *testing.T) {
 	module := jfrogAppsConfig.Module{}
-	assert.False(t, ShouldSkipScanner(module, jasutils.IaC))
+	assert.False(t, ShouldSkipScanner(&module, jasutils.IaC))
 
 	module = jfrogAppsConfig.Module{ExcludeScanners: []string{"sast"}}
-	assert.False(t, ShouldSkipScanner(module, jasutils.IaC))
-	assert.True(t, ShouldSkipScanner(module, jasutils.Sast))
+	assert.False(t, ShouldSkipScanner(&module, jasutils.IaC))
+	assert.True(t, ShouldSkipScanner(&module, jasutils.Sast))
+
+	// no module
+	assert.False(t, ShouldSkipScanner(nil, jasutils.IaC))
+	assert.False(t, ShouldSkipScanner(nil, jasutils.Sast))
+	assert.False(t, ShouldSkipScanner(nil, jasutils.Secrets))
+	assert.False(t, ShouldSkipScanner(nil, jasutils.MaliciousCode))
+	assert.False(t, ShouldSkipScanner(nil, jasutils.Applicability))
 }
 
 var getSourceRootsCases = []struct {
@@ -628,7 +635,7 @@ func TestProcessSarifRuns(t *testing.T) {
 		sarifutils.CreateResultWithOneLocation(fmt.Sprintf("file://%s", filepath.Join(wd, "dir", "file2")), 0, 0, 0, 0, "snippet", "rule1", "error"),
 	))
 
-	processSarifRuns(dummyReport.Runs, wd, "docs URL", severityutils.High)
+	processSarifRuns(dummyReport.Runs, "docs URL", severityutils.High, wd)
 	run := dummyReport.Runs[0]
 
 	// Check Invocation added.
diff --git a/jas/iac/iacscanner.go b/jas/iac/iacscanner.go
index 3bede78d5..101c86d4b 100644
--- a/jas/iac/iacscanner.go
+++ b/jas/iac/iacscanner.go
@@ -9,6 +9,7 @@ import (
 	"github.com/jfrog/jfrog-cli-security/utils"
 	"github.com/jfrog/jfrog-cli-security/utils/formats/sarifutils"
 	"github.com/jfrog/jfrog-cli-security/utils/jasutils"
+	"github.com/jfrog/jfrog-cli-security/utils/results"
 
 	"github.com/jfrog/jfrog-client-go/utils/log"
 	"github.com/owenrumney/go-sarif/v3/pkg/report/v210/sarif"
@@ -28,28 +29,43 @@ type IacScanManager struct {
 	resultsFileName          string
 }
 
+type IacScanParams struct {
+	ThreadId         int
+	TargetCount      int
+	ResultsToCompare []*sarif.Run
+	Module           *jfrogappsconfig.Module
+	Target           results.ScanTarget
+}
+
 // The getIacScanResults function runs the iac scan flow, which includes the following steps:
 // Creating an IacScanManager object.
 // Running the analyzer manager executable.
 // Parsing the analyzer manager results.
-func RunIacScan(scanner *jas.JasScanner, module jfrogappsconfig.Module, targetCount, threadId int, resultsToCompare ...*sarif.Run) (vulnerabilitiesResults []*sarif.Run, violationsResults []*sarif.Run, err error) {
+func RunIacScan(scanner *jas.JasScanner, params IacScanParams) (vulnerabilitiesResults []*sarif.Run, violationsResults []*sarif.Run, err error) {
 	var scannerTempDir string
-	if scannerTempDir, err = jas.CreateScannerTempDirectory(scanner, jasutils.IaC.String(), threadId); err != nil {
+	if scannerTempDir, err = jas.CreateScannerTempDirectory(scanner, jasutils.IaC.String(), params.ThreadId); err != nil {
 		return
 	}
-	iacScanManager, err := newIacScanManager(scanner, scannerTempDir, resultsToCompare...)
+	iacScanManager, err := newIacScanManager(scanner, scannerTempDir, params.ResultsToCompare...)
 	if err != nil {
 		return
 	}
 	startTime := time.Now()
-	log.Info(jas.GetStartJasScanLog(utils.IacScan, threadId, module, targetCount))
-	if vulnerabilitiesResults, violationsResults, err = iacScanManager.scanner.Run(iacScanManager, module); err != nil {
+	log.Info(jas.GetStartJasScanLog(utils.IacScan, params.ThreadId, params.Module, params.TargetCount))
+	if vulnerabilitiesResults, violationsResults, err = runIacScan(iacScanManager, params); err != nil {
 		return
 	}
-	log.Info(utils.GetScanFindingsLog(utils.IacScan, sarifutils.GetResultsLocationCount(vulnerabilitiesResults...), startTime, threadId))
+	log.Info(utils.GetScanFindingsLog(utils.IacScan, sarifutils.GetResultsLocationCount(vulnerabilitiesResults...), startTime, params.ThreadId))
 	return
 }
 
+func runIacScan(iacScanManager *IacScanManager, params IacScanParams) (vulnerabilitiesResults []*sarif.Run, violationsResults []*sarif.Run, err error) {
+	if params.Module == nil {
+		return iacScanManager.scanner.Run(iacScanManager, params.Target)
+	}
+	return iacScanManager.scanner.DeprecatedRun(iacScanManager, *params.Module)
+}
+
 func newIacScanManager(scanner *jas.JasScanner, scannerTempDir string, resultsToCompare ...*sarif.Run) (manager *IacScanManager, err error) {
 	manager = &IacScanManager{
 		scanner:         scanner,
@@ -70,13 +86,23 @@ func newIacScanManager(scanner *jas.JasScanner, scannerTempDir string, resultsTo
 }
 
 func (iac *IacScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
-	if err = iac.createConfigFile(module, iac.scanner.ScannersExclusions.IacExcludePatterns, iac.scanner.Exclusions...); err != nil {
+	if err = iac.deprecatedCreateConfigFile(module, iac.scanner.ScannersExclusions.IacExcludePatterns, iac.scanner.Exclusions...); err != nil {
+		return
+	}
+	if err = iac.runAnalyzerManager(); err != nil {
+		return
+	}
+	return jas.ReadJasScanRunsFromFile(iac.resultsFileName, iacDocsUrlSuffix, iac.scanner.MinSeverity, module.SourceRoot)
+}
+
+func (iac *IacScanManager) Run(target results.ScanTarget) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+	if err = iac.createConfigFileForTarget(target, iac.scanner.ScannersExclusions.IacExcludePatterns); err != nil {
 		return
 	}
 	if err = iac.runAnalyzerManager(); err != nil {
 		return
 	}
-	return jas.ReadJasScanRunsFromFile(iac.resultsFileName, module.SourceRoot, iacDocsUrlSuffix, iac.scanner.MinSeverity)
+	return jas.ReadJasScanRunsFromFile(iac.resultsFileName, iacDocsUrlSuffix, iac.scanner.MinSeverity, target.Include...)
 }
 
 type iacScanConfig struct {
@@ -91,7 +117,7 @@ type iacScanConfiguration struct {
 	SkippedDirs            []string `yaml:"skipped-folders"`
 }
 
-func (iac *IacScanManager) createConfigFile(module jfrogappsconfig.Module, centralConfigExclusions []string, exclusions ...string) error {
+func (iac *IacScanManager) deprecatedCreateConfigFile(module jfrogappsconfig.Module, centralConfigExclusions []string, exclusions ...string) error {
 	roots, err := jas.GetSourceRoots(module, module.Scanners.Iac)
 	if err != nil {
 		return err
@@ -110,6 +136,21 @@ func (iac *IacScanManager) createConfigFile(module jfrogappsconfig.Module, centr
 	return jas.CreateScannersConfigFile(iac.configFileName, configFileContent, jasutils.IaC)
 }
 
+func (iac *IacScanManager) createConfigFileForTarget(target results.ScanTarget, centralConfigExclusions []string) error {
+	configFileContent := iacScanConfig{
+		Scans: []iacScanConfiguration{
+			{
+				Roots:                  target.Include,
+				Output:                 iac.resultsFileName,
+				PathToResultsToCompare: iac.resultsToCompareFileName,
+				Type:                   iacScannerType,
+				SkippedDirs:            jas.GetExcludePatternsForTarget(target, centralConfigExclusions),
+			},
+		},
+	}
+	return jas.CreateScannersConfigFile(iac.configFileName, configFileContent, jasutils.IaC)
+}
+
 func (iac *IacScanManager) runAnalyzerManager() error {
 	return iac.scanner.AnalyzerManager.Exec(iac.configFileName, iacScanCommand, filepath.Dir(iac.scanner.AnalyzerManager.AnalyzerManagerFullPath), iac.scanner.ServerDetails, iac.scanner.EnvVars)
 }
diff --git a/jas/iac/iacscanner_test.go b/jas/iac/iacscanner_test.go
index d07582d82..294127749 100644
--- a/jas/iac/iacscanner_test.go
+++ b/jas/iac/iacscanner_test.go
@@ -7,6 +7,7 @@ import (
 
 	"github.com/jfrog/jfrog-cli-security/utils/formats/sarifutils"
 	"github.com/jfrog/jfrog-cli-security/utils/jasutils"
+	"github.com/jfrog/jfrog-cli-security/utils/results"
 	"github.com/jfrog/jfrog-client-go/utils/io/fileutils"
 	"github.com/stretchr/testify/require"
 
@@ -56,18 +57,48 @@ func TestNewIacScanManagerWithFilesToCompare(t *testing.T) {
 	assert.True(t, fileutils.IsPathExists(iacScanManager.resultsToCompareFileName, false))
 }
 
+func TestIacScan_CreateDeprecatedConfigFile_VerifyFileWasCreated(t *testing.T) {
+	scanner, cleanUp := jas.InitJasTest(t)
+	defer cleanUp()
+
+	scannerTempDir, err := jas.CreateScannerTempDirectory(scanner, jasutils.IaC.String(), 0)
+	require.NoError(t, err)
+	iacScanManager, err := newIacScanManager(scanner, scannerTempDir)
+	require.NoError(t, err)
+
+	currWd, err := coreutils.GetWorkingDirectory()
+	assert.NoError(t, err)
+	err = iacScanManager.deprecatedCreateConfigFile(jfrogappsconfig.Module{SourceRoot: currWd}, []string{})
+
+	defer func() {
+		err = os.Remove(iacScanManager.configFileName)
+		assert.NoError(t, err)
+	}()
+
+	_, fileNotExistError := os.Stat(iacScanManager.configFileName)
+	assert.NoError(t, fileNotExistError)
+	fileContent, err := os.ReadFile(iacScanManager.configFileName)
+	assert.NoError(t, err)
+	assert.True(t, len(fileContent) > 0)
+}
+
 func TestIacScan_CreateConfigFile_VerifyFileWasCreated(t *testing.T) {
 	scanner, cleanUp := jas.InitJasTest(t)
 	defer cleanUp()
+	tempDir, cleanUpTempDir := coreTests.CreateTempDirWithCallbackAndAssert(t)
+	defer cleanUpTempDir()
 
+	scanner.TempDir = tempDir
 	scannerTempDir, err := jas.CreateScannerTempDirectory(scanner, jasutils.IaC.String(), 0)
 	require.NoError(t, err)
+
 	iacScanManager, err := newIacScanManager(scanner, scannerTempDir)
 	require.NoError(t, err)
 
 	currWd, err := coreutils.GetWorkingDirectory()
 	assert.NoError(t, err)
-	err = iacScanManager.createConfigFile(jfrogappsconfig.Module{SourceRoot: currWd}, []string{})
+	err = iacScanManager.createConfigFileForTarget(results.ScanTarget{Target: currWd}, []string{})
+	assert.NoError(t, err)
 
 	defer func() {
 		err = os.Remove(iacScanManager.configFileName)
@@ -93,7 +124,7 @@ func TestIacParseResults_EmptyResults(t *testing.T) {
 	iacScanManager.resultsFileName = filepath.Join(jas.GetTestDataPath(), "iac-scan", "no-violations.sarif")
 
 	// Act
-	vulnerabilitiesResults, violationResults, err := jas.ReadJasScanRunsFromFile(iacScanManager.resultsFileName, jfrogAppsConfigForTest.Modules[0].SourceRoot, iacDocsUrlSuffix, scanner.MinSeverity)
+	vulnerabilitiesResults, violationResults, err := jas.ReadJasScanRunsFromFile(iacScanManager.resultsFileName, iacDocsUrlSuffix, scanner.MinSeverity, jfrogAppsConfigForTest.Modules[0].SourceRoot)
 	if assert.NoError(t, err) && assert.NotNil(t, vulnerabilitiesResults) {
 		assert.Len(t, vulnerabilitiesResults, 1)
 		assert.Empty(t, vulnerabilitiesResults[0].Results)
@@ -116,7 +147,7 @@ func TestIacParseResults_ResultsContainIacViolations(t *testing.T) {
 	iacScanManager.resultsFileName = filepath.Join(tempDirPath, "contains-iac-issues.sarif")
 
 	// Act
-	vulnerabilitiesResults, violationResults, err := jas.ReadJasScanRunsFromFile(iacScanManager.resultsFileName, jfrogAppsConfigForTest.Modules[0].SourceRoot, iacDocsUrlSuffix, scanner.MinSeverity)
+	vulnerabilitiesResults, violationResults, err := jas.ReadJasScanRunsFromFile(iacScanManager.resultsFileName, iacDocsUrlSuffix, scanner.MinSeverity, jfrogAppsConfigForTest.Modules[0].SourceRoot)
 	if assert.NoError(t, err) && assert.NotNil(t, vulnerabilitiesResults) {
 		assert.Len(t, vulnerabilitiesResults, 1)
 		assert.Len(t, vulnerabilitiesResults[0].Results, 4)
diff --git a/jas/maliciouscode/maliciouscodescanner.go b/jas/maliciouscode/maliciouscodescanner.go
index 7f2414d0a..806976c0d 100644
--- a/jas/maliciouscode/maliciouscodescanner.go
+++ b/jas/maliciouscode/maliciouscodescanner.go
@@ -82,7 +82,7 @@ func (mal *MaliciousScanManager) Run(sourceRoot string) (vulnerabilitiesSarifRun
 		return
 	}
 	// Malicious code scans only return vulnerabilities, not violations
-	vulnerabilitiesSarifRuns, _, err = jas.ReadJasScanRunsFromFile(mal.resultsFileName, sourceRoot, malDocsUrlSuffix, mal.scanner.MinSeverity)
+	vulnerabilitiesSarifRuns, _, err = jas.ReadJasScanRunsFromFile(mal.resultsFileName, malDocsUrlSuffix, mal.scanner.MinSeverity, sourceRoot)
 	return
 }
 
diff --git a/jas/maliciouscode/maliciouscodescanner_test.go b/jas/maliciouscode/maliciouscodescanner_test.go
index 82bcc338c..4671cd2b2 100644
--- a/jas/maliciouscode/maliciouscodescanner_test.go
+++ b/jas/maliciouscode/maliciouscodescanner_test.go
@@ -100,7 +100,7 @@ func TestParseResults_EmptyResults(t *testing.T) {
 	maliciousScanManager.resultsFileName = filepath.Join(jas.GetTestDataPath(), "malicious-scan", "no-malicious.sarif")
 
 	// Act
-	vulnerabilitiesResults, _, err := jas.ReadJasScanRunsFromFile(maliciousScanManager.resultsFileName, currWd, malDocsUrlSuffix, scanner.MinSeverity)
+	vulnerabilitiesResults, _, err := jas.ReadJasScanRunsFromFile(maliciousScanManager.resultsFileName, malDocsUrlSuffix, scanner.MinSeverity, currWd)
 
 	// Assert
 	if assert.NoError(t, err) && assert.NotNil(t, vulnerabilitiesResults) {
@@ -121,7 +121,7 @@ func TestParseResults_ResultsContainMalicious(t *testing.T) {
 	maliciousScanManager.resultsFileName = filepath.Join(jas.GetTestDataPath(), "malicious-scan", "contain-malicious.sarif")
 
 	// Act
-	vulnerabilitiesResults, _, err := jas.ReadJasScanRunsFromFile(maliciousScanManager.resultsFileName, currWd, malDocsUrlSuffix, severityutils.Medium)
+	vulnerabilitiesResults, _, err := jas.ReadJasScanRunsFromFile(maliciousScanManager.resultsFileName, malDocsUrlSuffix, severityutils.Medium, currWd)
 
 	// Assert
 	if assert.NoError(t, err) && assert.NotNil(t, vulnerabilitiesResults) {
diff --git a/jas/runner/jasrunner.go b/jas/runner/jasrunner.go
index 478c01bab..46070036d 100644
--- a/jas/runner/jasrunner.go
+++ b/jas/runner/jasrunner.go
@@ -27,7 +27,7 @@ type JasRunnerParams struct {
 	ServerDetails *config.ServerDetails
 	Scanner       *jas.JasScanner
 	// Module / Target flags
-	Module        jfrogappsconfig.Module
+	Module        *jfrogappsconfig.Module
 	ConfigProfile *services.ConfigProfile
 	TargetCount   int
 	ScanResults   *results.TargetResults
@@ -50,15 +50,17 @@ type JasRunnerParams struct {
 	TargetOutputDir string
 }
 
+func (params JasRunnerParams) runAllScanners() bool {
+	// For docker scan we support only secrets and contextual scans.
+	return params.ApplicableScanType == applicability.ApplicabilityScannerType || params.SecretsScanType == secrets.SecretsScannerType
+}
+
 // Cves are only available after the SCA scan is performed, so we need a provider to dynamically pass the discovered cves.
 type CveProvider func() (directCves []string, indirectCves []string)
 
 func AddJasScannersTasks(params JasRunnerParams) error {
-	// For docker scan we support only secrets and contextual scans.
-	runAllScanners := params.ApplicableScanType == applicability.ApplicabilityScannerType || params.SecretsScanType == secrets.SecretsScannerType
-
 	var errorsCollection error
-	if generalError := addJasScanTaskForModuleIfNeeded(params, utils.ContextualAnalysisScan, runContextualScan(&params)); generalError != nil {
+	if generalError := addJasScanTaskIfNeeded(params, utils.ContextualAnalysisScan, runContextualScan(&params)); generalError != nil {
 		// Scan task addition failure should not impact the other scanners tasks addition, therefore we accumulate the errors and return the overall error at the end.
 		errorsCollection = errors.Join(errorsCollection, generalError)
 	}
@@ -67,29 +69,29 @@ func AddJasScannersTasks(params JasRunnerParams) error {
 		return errorsCollection
 	}
 
-	if generalError := addJasScanTaskForModuleIfNeeded(params, utils.SecretsScan, runSecretsScan(&params)); generalError != nil {
+	if generalError := addJasScanTaskIfNeeded(params, utils.SecretsScan, runSecretsScan(&params)); generalError != nil {
 		// Scan task addition failure should not impact the other scanners tasks addition, therefore we accumulate the errors and return the overall error at the end.
 		errorsCollection = errors.Join(errorsCollection, generalError)
 	}
 
-	if !runAllScanners {
+	if !params.runAllScanners() {
 		// Binary scan only supports secrets and contextual scans.
 		return errorsCollection
 	}
 
-	if generalError := addJasScanTaskForModuleIfNeeded(params, utils.IacScan, runIacScan(&params)); generalError != nil {
+	if generalError := addJasScanTaskIfNeeded(params, utils.IacScan, runIacScan(&params)); generalError != nil {
 		// Scan task addition failure should not impact the other scanners tasks addition, therefore we accumulate the errors and return the overall error at the end.
 		errorsCollection = errors.Join(errorsCollection, generalError)
 	}
 
-	if generalError := addJasScanTaskForModuleIfNeeded(params, utils.SastScan, runSastScan(&params)); generalError != nil {
+	if generalError := addJasScanTaskIfNeeded(params, utils.SastScan, runSastScan(&params)); generalError != nil {
 		// Scan task addition failure should not impact the other scanners tasks addition, therefore we accumulate the errors and return the overall error at the end.
 		errorsCollection = errors.Join(errorsCollection, generalError)
 	}
 	return errorsCollection
 }
 
-func addJasScanTaskForModuleIfNeeded(params JasRunnerParams, subScan utils.SubScanType, task parallel.TaskFunc) (generalError error) {
+func addJasScanTaskIfNeeded(params JasRunnerParams, subScan utils.SubScanType, task parallel.TaskFunc) (generalError error) {
 	jasType := jasutils.SubScanTypeToJasScanType(subScan)
 	if jasType == "" {
 		return fmt.Errorf("failed to determine Jas scan type for %s", subScan)
@@ -113,7 +115,7 @@ func addJasScanTaskForModuleIfNeeded(params JasRunnerParams, subScan utils.SubSc
 			enabled = params.ConfigProfile.Modules[0].ScanConfig.ContextualAnalysisScannerConfig.EnableCaScan && params.ConfigProfile.Modules[0].ScanConfig.ScaScannerConfig.EnableScaScan
 		}
 		if enabled {
-			generalError = addModuleJasScanTask(jasType, params.Runner, task, params.ScanResults, params.AllowPartialResults)
+			generalError = addJasScanTask(jasType, params.Runner, task, params.ScanResults, params.AllowPartialResults)
 		} else {
 			log.Debug(fmt.Sprintf("Skipping %s scan as requested by '%s' config profile...", jasType, params.ConfigProfile.ProfileName))
 		}
@@ -123,10 +125,10 @@ func addJasScanTaskForModuleIfNeeded(params JasRunnerParams, subScan utils.SubSc
 		log.Debug(fmt.Sprintf("Skipping %s scan as requested by local module config...", subScan))
 		return
 	}
-	return addModuleJasScanTask(jasType, params.Runner, task, params.ScanResults, params.AllowPartialResults)
+	return addJasScanTask(jasType, params.Runner, task, params.ScanResults, params.AllowPartialResults)
 }
 
-func addModuleJasScanTask(scanType jasutils.JasScanType, securityParallelRunner *utils.SecurityParallelRunner, task parallel.TaskFunc, scanResults *results.TargetResults, allowSkippingErrors bool) (generalError error) {
+func addJasScanTask(scanType jasutils.JasScanType, securityParallelRunner *utils.SecurityParallelRunner, task parallel.TaskFunc, scanResults *results.TargetResults, allowSkippingErrors bool) (generalError error) {
 	securityParallelRunner.JasScannersWg.Add(1)
 	if _, addTaskErr := securityParallelRunner.Runner.AddTaskWithError(task, func(err error) {
 		_ = scanResults.AddTargetError(fmt.Errorf("failed to run %s scan: %s", scanType, err.Error()), allowSkippingErrors)
@@ -141,7 +143,15 @@ func runSecretsScan(params *JasRunnerParams) parallel.TaskFunc {
 		defer func() {
 			params.Runner.JasScannersWg.Done()
 		}()
-		vulnerabilitiesResults, violationsResults, err := secrets.RunSecretsScan(params.Scanner, params.SecretsScanType, params.Module, params.TargetCount, threadId, getSourceRunsToCompare(params, jasutils.Secrets)...)
+		secretsScanParams := secrets.SecretsScanParams{
+			ThreadId:         threadId,
+			TargetCount:      params.TargetCount,
+			ScanType:         params.SecretsScanType,
+			ResultsToCompare: getSourceRunsToCompare(params, jasutils.Secrets),
+			Module:           params.Module,
+			Target:           params.ScanResults.ScanTarget,
+		}
+		vulnerabilitiesResults, violationsResults, err := secrets.RunSecretsScan(params.Scanner, secretsScanParams)
 		params.Runner.ResultsMu.Lock()
 		defer params.Runner.ResultsMu.Unlock()
 		// We first add the scan results and only then check for errors, so we can store the exit code in order to report it in the end
@@ -158,7 +168,14 @@ func runIacScan(params *JasRunnerParams) parallel.TaskFunc {
 		defer func() {
 			params.Runner.JasScannersWg.Done()
 		}()
-		vulnerabilitiesResults, violationsResults, err := iac.RunIacScan(params.Scanner, params.Module, params.TargetCount, threadId, getSourceRunsToCompare(params, jasutils.IaC)...)
+		iacScanParams := iac.IacScanParams{
+			ThreadId:         threadId,
+			TargetCount:      params.TargetCount,
+			ResultsToCompare: getSourceRunsToCompare(params, jasutils.IaC),
+			Module:           params.Module,
+			Target:           params.ScanResults.ScanTarget,
+		}
+		vulnerabilitiesResults, violationsResults, err := iac.RunIacScan(params.Scanner, iacScanParams)
 		params.Runner.ResultsMu.Lock()
 		defer params.Runner.ResultsMu.Unlock()
 		// We first add the scan results and only then check for errors, so we can store the exit code in order to report it in the end
@@ -175,7 +192,16 @@ func runSastScan(params *JasRunnerParams) parallel.TaskFunc {
 		defer func() {
 			params.Runner.JasScannersWg.Done()
 		}()
-		vulnerabilitiesResults, violationsResults, err := sast.RunSastScan(params.Scanner, params.Module, params.SignedDescriptions, params.SastRules, params.TargetCount, threadId, getSourceRunsToCompare(params, jasutils.Sast)...)
+		sastScanParams := sast.SastScanParams{
+			ThreadId:           threadId,
+			TargetCount:        params.TargetCount,
+			SignedDescriptions: params.SignedDescriptions,
+			SastRules:          params.SastRules,
+			ResultsToCompare:   getSourceRunsToCompare(params, jasutils.Sast),
+			Module:             params.Module,
+			Target:             params.ScanResults.ScanTarget,
+		}
+		vulnerabilitiesResults, violationsResults, err := sast.RunSastScan(params.Scanner, sastScanParams)
 		params.Runner.ResultsMu.Lock()
 		defer params.Runner.ResultsMu.Unlock()
 		// We first add the scan results and only then check for errors, so we can store the exit code in order to report it in the end
diff --git a/jas/runner/jasrunner_test.go b/jas/runner/jasrunner_test.go
index 3d77abf27..23dd61cce 100644
--- a/jas/runner/jasrunner_test.go
+++ b/jas/runner/jasrunner_test.go
@@ -65,7 +65,7 @@ func TestJasRunner(t *testing.T) {
 	assert.NoError(t, AddJasScannersTasks(testParams))
 }
 
-func TestJasRunner_AnalyzerManagerReturnsError(t *testing.T) {
+func TestJasRunner_Module_AnalyzerManagerReturnsError(t *testing.T) {
 	assert.NoError(t, testUtils.PrepareAnalyzerManagerResource())
 
 	jfrogAppsConfigForTest, _ := jas.CreateJFrogAppsConfig(nil)
@@ -76,7 +76,25 @@ func TestJasRunner_AnalyzerManagerReturnsError(t *testing.T) {
 			DirectDependenciesCves:   directCves,
 			IndirectDependenciesCves: indirectCves,
 			ScanType:                 applicability.ApplicabilityScannerType,
-			Module:                   jfrogAppsConfigForTest.Modules[0],
+			Module:                   &jfrogAppsConfigForTest.Modules[0],
+		},
+		scanner,
+	)
+	// Expect error:
+	assert.ErrorContains(t, jas.ParseAnalyzerManagerError(jasutils.Applicability, err), "failed to run Applicability scan")
+}
+
+func TestJasRunner_Target_AnalyzerManagerReturnsError(t *testing.T) {
+	assert.NoError(t, testUtils.PrepareAnalyzerManagerResource())
+
+	scanner, _ := jas.NewJasScanner(&jas.FakeServerDetails)
+	directCves, indirectCves := results.ExtractCvesFromScanResponse(jas.FakeBasicXrayResults, []string{"issueId_2_direct_dependency", "issueId_1_direct_dependency"})
+	_, err := applicability.RunApplicabilityScan(
+		applicability.ContextualAnalysisScanParams{
+			DirectDependenciesCves:   directCves,
+			IndirectDependenciesCves: indirectCves,
+			ScanType:                 applicability.ApplicabilityScannerType,
+			Target:                   results.ScanTarget{Target: "target"},
 		},
 		scanner,
 	)
diff --git a/jas/sast/sastscanner.go b/jas/sast/sastscanner.go
index e06657b27..25dabf1a0 100644
--- a/jas/sast/sastscanner.go
+++ b/jas/sast/sastscanner.go
@@ -10,6 +10,7 @@ import (
 	"github.com/jfrog/jfrog-cli-security/utils"
 	"github.com/jfrog/jfrog-cli-security/utils/formats/sarifutils"
 	"github.com/jfrog/jfrog-cli-security/utils/jasutils"
+	"github.com/jfrog/jfrog-cli-security/utils/results"
 	"github.com/jfrog/jfrog-client-go/utils/log"
 	"github.com/owenrumney/go-sarif/v3/pkg/report/v210/sarif"
 	"golang.org/x/exp/maps"
@@ -31,24 +32,41 @@ type SastScanManager struct {
 	resultsFileName          string
 }
 
-func RunSastScan(scanner *jas.JasScanner, module jfrogappsconfig.Module, signedDescriptions bool, sastRules string, targetCount, threadId int, resultsToCompare ...*sarif.Run) (vulnerabilitiesResults []*sarif.Run, violationsResults []*sarif.Run, err error) {
+type SastScanParams struct {
+	ThreadId           int
+	TargetCount        int
+	SignedDescriptions bool
+	SastRules          string
+	ResultsToCompare   []*sarif.Run
+	Module             *jfrogappsconfig.Module
+	Target             results.ScanTarget
+}
+
+func RunSastScan(scanner *jas.JasScanner, params SastScanParams) (vulnerabilitiesResults []*sarif.Run, violationsResults []*sarif.Run, err error) {
 	var scannerTempDir string
-	if scannerTempDir, err = jas.CreateScannerTempDirectory(scanner, jasutils.Sast.String(), threadId); err != nil {
+	if scannerTempDir, err = jas.CreateScannerTempDirectory(scanner, jasutils.Sast.String(), params.ThreadId); err != nil {
 		return
 	}
-	sastScanManager, err := newSastScanManager(scanner, scannerTempDir, signedDescriptions, sastRules, resultsToCompare...)
+	sastScanManager, err := newSastScanManager(scanner, scannerTempDir, params.SignedDescriptions, params.SastRules, params.ResultsToCompare...)
 	if err != nil {
 		return
 	}
 	startTime := time.Now()
-	log.Info(jas.GetStartJasScanLog(utils.SastScan, threadId, module, targetCount))
-	if vulnerabilitiesResults, violationsResults, err = sastScanManager.scanner.Run(sastScanManager, module); err != nil {
+	log.Info(jas.GetStartJasScanLog(utils.SastScan, params.ThreadId, params.Module, params.TargetCount))
+	if vulnerabilitiesResults, violationsResults, err = runSastScan(sastScanManager, params); err != nil {
 		return
 	}
-	log.Info(utils.GetScanFindingsLog(utils.SastScan, sarifutils.GetResultsLocationCount(vulnerabilitiesResults...), startTime, threadId))
+	log.Info(utils.GetScanFindingsLog(utils.SastScan, sarifutils.GetResultsLocationCount(vulnerabilitiesResults...), startTime, params.ThreadId))
 	return
 }
 
+func runSastScan(sastScanManager *SastScanManager, params SastScanParams) (vulnerabilitiesResults []*sarif.Run, violationsResults []*sarif.Run, err error) {
+	if params.Module == nil {
+		return sastScanManager.scanner.Run(sastScanManager, params.Target)
+	}
+	return sastScanManager.scanner.DeprecatedRun(sastScanManager, *params.Module)
+}
+
 func newSastScanManager(scanner *jas.JasScanner, scannerTempDir string, signedDescriptions bool, sastRules string, resultsToCompare ...*sarif.Run) (manager *SastScanManager, err error) {
 	manager = &SastScanManager{
 		scanner:            scanner,
@@ -69,13 +87,29 @@ func newSastScanManager(scanner *jas.JasScanner, scannerTempDir string, signedDe
 }
 
 func (ssm *SastScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
-	if err = ssm.createConfigFile(module, ssm.signedDescriptions, ssm.scanner.ScannersExclusions.SastExcludePatterns, ssm.scanner.Exclusions...); err != nil {
+	if err = ssm.deprecatedCreateConfigFile(module, ssm.signedDescriptions, ssm.scanner.ScannersExclusions.SastExcludePatterns, ssm.scanner.Exclusions...); err != nil {
 		return
 	}
 	if err = ssm.runAnalyzerManager(filepath.Dir(ssm.scanner.AnalyzerManager.AnalyzerManagerFullPath)); err != nil {
 		return
 	}
-	vulnerabilitiesSarifRuns, violationsSarifRuns, err = jas.ReadJasScanRunsFromFile(ssm.resultsFileName, module.SourceRoot, sastDocsUrlSuffix, ssm.scanner.MinSeverity)
+	vulnerabilitiesSarifRuns, violationsSarifRuns, err = jas.ReadJasScanRunsFromFile(ssm.resultsFileName, sastDocsUrlSuffix, ssm.scanner.MinSeverity, module.SourceRoot)
+	if err != nil {
+		return
+	}
+	groupResultsByLocation(vulnerabilitiesSarifRuns)
+	groupResultsByLocation(violationsSarifRuns)
+	return
+}
+
+func (ssm *SastScanManager) Run(target results.ScanTarget) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+	if err = ssm.createConfigFileForTarget(target, ssm.scanner.ScannersExclusions.SastExcludePatterns); err != nil {
+		return
+	}
+	if err = ssm.runAnalyzerManager(filepath.Dir(ssm.scanner.AnalyzerManager.AnalyzerManagerFullPath)); err != nil {
+		return
+	}
+	vulnerabilitiesSarifRuns, violationsSarifRuns, err = jas.ReadJasScanRunsFromFile(ssm.resultsFileName, sastDocsUrlSuffix, ssm.scanner.MinSeverity, target.Include...)
 	if err != nil {
 		return
 	}
@@ -104,7 +138,7 @@ type sastParameters struct {
 	SignedDescriptions bool `yaml:"signed_descriptions,omitempty"`
 }
 
-func (ssm *SastScanManager) createConfigFile(module jfrogappsconfig.Module, signedDescriptions bool, centralConfigExclusions []string, exclusions ...string) error {
+func (ssm *SastScanManager) deprecatedCreateConfigFile(module jfrogappsconfig.Module, signedDescriptions bool, centralConfigExclusions []string, exclusions ...string) error {
 	sastScanner := module.Scanners.Sast
 	if sastScanner == nil {
 		sastScanner = &jfrogappsconfig.SastScanner{}
@@ -133,6 +167,25 @@ func (ssm *SastScanManager) createConfigFile(module jfrogappsconfig.Module, sign
 	return jas.CreateScannersConfigFile(ssm.configFileName, configFileContent, jasutils.Sast)
 }
 
+func (ssm *SastScanManager) createConfigFileForTarget(target results.ScanTarget, centralConfigExclusions []string) error {
+	configFileContent := sastScanConfig{
+		Scans: []scanConfiguration{
+			{
+				Type:                   sastScannerType,
+				Roots:                  target.Include,
+				Output:                 ssm.resultsFileName,
+				PathToResultsToCompare: ssm.resultsToCompareFileName,
+				SastParameters: sastParameters{
+					SignedDescriptions: ssm.signedDescriptions,
+				},
+				ExcludePatterns: jas.GetExcludePatternsForTarget(target, centralConfigExclusions),
+				UserRules:       ssm.sastRules,
+			},
+		},
+	}
+	return jas.CreateScannersConfigFile(ssm.configFileName, configFileContent, jasutils.Sast)
+}
+
 func (ssm *SastScanManager) runAnalyzerManager(wd string) error {
 	return ssm.scanner.AnalyzerManager.ExecWithOutputFile(ssm.configFileName, sastScanCommand, wd, ssm.resultsFileName, ssm.scanner.ServerDetails, ssm.scanner.EnvVars)
 }
diff --git a/jas/sast/sastscanner_test.go b/jas/sast/sastscanner_test.go
index 7b51e9f02..c5b1edd07 100644
--- a/jas/sast/sastscanner_test.go
+++ b/jas/sast/sastscanner_test.go
@@ -67,7 +67,7 @@ func TestSastParseResults_EmptyResults(t *testing.T) {
 	sastScanManager.resultsFileName = filepath.Join(jas.GetTestDataPath(), "sast-scan", "no-violations.sarif")
 
 	// Act
-	vulnerabilitiesResults, _, err := jas.ReadJasScanRunsFromFile(sastScanManager.resultsFileName, jfrogAppsConfigForTest.Modules[0].SourceRoot, sastDocsUrlSuffix, scanner.MinSeverity)
+	vulnerabilitiesResults, _, err := jas.ReadJasScanRunsFromFile(sastScanManager.resultsFileName, sastDocsUrlSuffix, scanner.MinSeverity, jfrogAppsConfigForTest.Modules[0].SourceRoot)
 
 	// Assert
 	if assert.NoError(t, err) && assert.NotNil(t, vulnerabilitiesResults) {
@@ -90,7 +90,7 @@ func TestSastParseResults_ResultsContainIacViolations(t *testing.T) {
 	sastScanManager.resultsFileName = filepath.Join(jas.GetTestDataPath(), "sast-scan", "contains-sast-violations.sarif")
 
 	// Act
-	vulnerabilitiesResults, _, err := jas.ReadJasScanRunsFromFile(sastScanManager.resultsFileName, jfrogAppsConfigForTest.Modules[0].SourceRoot, sastDocsUrlSuffix, scanner.MinSeverity)
+	vulnerabilitiesResults, _, err := jas.ReadJasScanRunsFromFile(sastScanManager.resultsFileName, sastDocsUrlSuffix, scanner.MinSeverity, jfrogAppsConfigForTest.Modules[0].SourceRoot)
 
 	// Assert
 	if assert.NoError(t, err) && assert.NotNil(t, vulnerabilitiesResults) {
diff --git a/jas/secrets/secretsscanner.go b/jas/secrets/secretsscanner.go
index b255176b7..62ee3cec6 100644
--- a/jas/secrets/secretsscanner.go
+++ b/jas/secrets/secretsscanner.go
@@ -10,6 +10,7 @@ import (
 	"github.com/jfrog/jfrog-cli-security/utils"
 	"github.com/jfrog/jfrog-cli-security/utils/formats/sarifutils"
 	"github.com/jfrog/jfrog-cli-security/utils/jasutils"
+	"github.com/jfrog/jfrog-cli-security/utils/results"
 	"github.com/jfrog/jfrog-client-go/utils/log"
 	"github.com/owenrumney/go-sarif/v3/pkg/report/v210/sarif"
 )
@@ -34,28 +35,44 @@ type SecretScanManager struct {
 	resultsFileName          string
 }
 
+type SecretsScanParams struct {
+	ThreadId         int
+	TargetCount      int
+	ScanType         SecretsScanType
+	ResultsToCompare []*sarif.Run
+	Module           *jfrogappsconfig.Module
+	Target           results.ScanTarget
+}
+
 // The getSecretsScanResults function runs the secrets scan flow, which includes the following steps:
 // Creating an SecretScanManager object.
 // Running the analyzer manager executable.
 // Parsing the analyzer manager results.
-func RunSecretsScan(scanner *jas.JasScanner, scanType SecretsScanType, module jfrogappsconfig.Module, targetCount, threadId int, resultsToCompare ...*sarif.Run) (vulnerabilitiesResults []*sarif.Run, violationsResults []*sarif.Run, err error) {
+func RunSecretsScan(scanner *jas.JasScanner, params SecretsScanParams) (vulnerabilitiesResults []*sarif.Run, violationsResults []*sarif.Run, err error) {
 	var scannerTempDir string
-	if scannerTempDir, err = jas.CreateScannerTempDirectory(scanner, jasutils.Secrets.String(), threadId); err != nil {
+	if scannerTempDir, err = jas.CreateScannerTempDirectory(scanner, jasutils.Secrets.String(), params.ThreadId); err != nil {
 		return
 	}
-	secretScanManager, err := newSecretsScanManager(scanner, scanType, scannerTempDir, resultsToCompare...)
+	secretScanManager, err := newSecretsScanManager(scanner, params.ScanType, scannerTempDir, params.ResultsToCompare...)
 	if err != nil {
 		return
 	}
 	startTime := time.Now()
-	log.Info(jas.GetStartJasScanLog(utils.SecretsScan, threadId, module, targetCount))
-	if vulnerabilitiesResults, violationsResults, err = secretScanManager.scanner.Run(secretScanManager, module); err != nil {
+	log.Info(jas.GetStartJasScanLog(utils.SecretsScan, params.ThreadId, params.Module, params.TargetCount))
+	if vulnerabilitiesResults, violationsResults, err = runSecretsScan(secretScanManager, params); err != nil {
 		return
 	}
-	log.Info(utils.GetScanFindingsLog(utils.SecretsScan, sarifutils.GetResultsLocationCount(vulnerabilitiesResults...), startTime, threadId))
+	log.Info(utils.GetScanFindingsLog(utils.SecretsScan, sarifutils.GetResultsLocationCount(vulnerabilitiesResults...), startTime, params.ThreadId))
 	return
 }
 
+func runSecretsScan(secretScanManager *SecretScanManager, params SecretsScanParams) (vulnerabilitiesResults []*sarif.Run, violationsResults []*sarif.Run, err error) {
+	if params.Module == nil {
+		return secretScanManager.scanner.Run(secretScanManager, params.Target)
+	}
+	return secretScanManager.scanner.DeprecatedRun(secretScanManager, *params.Module)
+}
+
 func newSecretsScanManager(scanner *jas.JasScanner, scanType SecretsScanType, scannerTempDir string, resultsToCompare ...*sarif.Run) (manager *SecretScanManager, err error) {
 	manager = &SecretScanManager{
 		scanner:         scanner,
@@ -75,13 +92,23 @@ func newSecretsScanManager(scanner *jas.JasScanner, scanType SecretsScanType, sc
 }
 
 func (ssm *SecretScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
-	if err = ssm.createConfigFile(module, ssm.scanner.ScannersExclusions.SecretsExcludePatterns, ssm.scanner.Exclusions...); err != nil {
+	if err = ssm.deprecatedCreateConfigFile(module, ssm.scanner.ScannersExclusions.SecretsExcludePatterns, ssm.scanner.Exclusions...); err != nil {
+		return
+	}
+	if err = ssm.runAnalyzerManager(); err != nil {
+		return
+	}
+	return jas.ReadJasScanRunsFromFile(ssm.resultsFileName, secretsDocsUrlSuffix, ssm.scanner.MinSeverity, module.SourceRoot)
+}
+
+func (ssm *SecretScanManager) Run(target results.ScanTarget) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+	if err = ssm.createConfigFileForTarget(target, ssm.scanner.ScannersExclusions.SecretsExcludePatterns); err != nil {
 		return
 	}
 	if err = ssm.runAnalyzerManager(); err != nil {
 		return
 	}
-	return jas.ReadJasScanRunsFromFile(ssm.resultsFileName, module.SourceRoot, secretsDocsUrlSuffix, ssm.scanner.MinSeverity)
+	return jas.ReadJasScanRunsFromFile(ssm.resultsFileName, secretsDocsUrlSuffix, ssm.scanner.MinSeverity, target.Include...)
 }
 
 type secretsScanConfig struct {
@@ -96,7 +123,7 @@ type secretsScanConfiguration struct {
 	SkippedDirs            []string `yaml:"skipped-folders"`
 }
 
-func (s *SecretScanManager) createConfigFile(module jfrogappsconfig.Module, centralConfigExclusions []string, exclusions ...string) error {
+func (s *SecretScanManager) deprecatedCreateConfigFile(module jfrogappsconfig.Module, centralConfigExclusions []string, exclusions ...string) error {
 	roots, err := jas.GetSourceRoots(module, module.Scanners.Secrets)
 	if err != nil {
 		return err
@@ -115,6 +142,21 @@ func (s *SecretScanManager) createConfigFile(module jfrogappsconfig.Module, cent
 	return jas.CreateScannersConfigFile(s.configFileName, configFileContent, jasutils.Secrets)
 }
 
+func (s *SecretScanManager) createConfigFileForTarget(target results.ScanTarget, centralConfigExclusions []string) error {
+	configFileContent := secretsScanConfig{
+		Scans: []secretsScanConfiguration{
+			{
+				Roots:                  target.Include,
+				Output:                 s.resultsFileName,
+				PathToResultsToCompare: s.resultsToCompareFileName,
+				Type:                   string(s.scanType),
+				SkippedDirs:            jas.GetExcludePatternsForTarget(target, centralConfigExclusions),
+			},
+		},
+	}
+	return jas.CreateScannersConfigFile(s.configFileName, configFileContent, jasutils.Secrets)
+}
+
 func (s *SecretScanManager) runAnalyzerManager() error {
 	return s.scanner.AnalyzerManager.Exec(s.configFileName, secretsScanCommand, filepath.Dir(s.scanner.AnalyzerManager.AnalyzerManagerFullPath), s.scanner.ServerDetails, s.scanner.EnvVars)
 }
diff --git a/jas/secrets/secretsscanner_test.go b/jas/secrets/secretsscanner_test.go
index 757b282c5..859f88f48 100644
--- a/jas/secrets/secretsscanner_test.go
+++ b/jas/secrets/secretsscanner_test.go
@@ -7,6 +7,7 @@ import (
 
 	"github.com/jfrog/jfrog-cli-security/utils/formats/sarifutils"
 	"github.com/jfrog/jfrog-cli-security/utils/jasutils"
+	"github.com/jfrog/jfrog-cli-security/utils/results"
 	"github.com/jfrog/jfrog-cli-security/utils/severityutils"
 	"github.com/jfrog/jfrog-client-go/utils/io/fileutils"
 	"github.com/stretchr/testify/require"
@@ -51,18 +52,48 @@ func TestNewSecretsScanManagerWithFilesToCompare(t *testing.T) {
 	assert.True(t, fileutils.IsPathExists(secretScanManager.resultsToCompareFileName, false))
 }
 
+func TestSecretsScan_CreateDeprecatedConfigFile_VerifyFileWasCreated(t *testing.T) {
+	scanner, cleanUp := jas.InitJasTest(t)
+	defer cleanUp()
+
+	scannerTempDir, err := jas.CreateScannerTempDirectory(scanner, jasutils.Secrets.String(), 0)
+	require.NoError(t, err)
+	secretScanManager, err := newSecretsScanManager(scanner, SecretsScannerType, scannerTempDir)
+	require.NoError(t, err)
+
+	currWd, err := coreutils.GetWorkingDirectory()
+	assert.NoError(t, err)
+	err = secretScanManager.deprecatedCreateConfigFile(jfrogappsconfig.Module{SourceRoot: currWd}, []string{})
+	assert.NoError(t, err)
+
+	defer func() {
+		err = os.Remove(secretScanManager.configFileName)
+		assert.NoError(t, err)
+	}()
+
+	_, fileNotExistError := os.Stat(secretScanManager.configFileName)
+	assert.NoError(t, fileNotExistError)
+	fileContent, err := os.ReadFile(secretScanManager.configFileName)
+	assert.NoError(t, err)
+	assert.True(t, len(fileContent) > 0)
+}
+
 func TestSecretsScan_CreateConfigFile_VerifyFileWasCreated(t *testing.T) {
 	scanner, cleanUp := jas.InitJasTest(t)
 	defer cleanUp()
+	tempDir, cleanUpTempDir := coreTests.CreateTempDirWithCallbackAndAssert(t)
+	defer cleanUpTempDir()
 
+	scanner.TempDir = tempDir
 	scannerTempDir, err := jas.CreateScannerTempDirectory(scanner, jasutils.Secrets.String(), 0)
 	require.NoError(t, err)
+
 	secretScanManager, err := newSecretsScanManager(scanner, SecretsScannerType, scannerTempDir)
 	require.NoError(t, err)
 
 	currWd, err := coreutils.GetWorkingDirectory()
 	assert.NoError(t, err)
-	err = secretScanManager.createConfigFile(jfrogappsconfig.Module{SourceRoot: currWd}, []string{})
+	err = secretScanManager.createConfigFileForTarget(results.ScanTarget{Target: currWd}, []string{})
 	assert.NoError(t, err)
 
 	defer func() {
@@ -101,7 +132,7 @@ func TestParseResults_EmptyResults(t *testing.T) {
 	secretScanManager.resultsFileName = filepath.Join(jas.GetTestDataPath(), "secrets-scan", "no-secrets.sarif")
 
 	// Act
-	vulnerabilitiesResults, _, err := jas.ReadJasScanRunsFromFile(secretScanManager.resultsFileName, jfrogAppsConfigForTest.Modules[0].SourceRoot, secretsDocsUrlSuffix, scanner.MinSeverity)
+	vulnerabilitiesResults, _, err := jas.ReadJasScanRunsFromFile(secretScanManager.resultsFileName, secretsDocsUrlSuffix, scanner.MinSeverity, jfrogAppsConfigForTest.Modules[0].SourceRoot)
 
 	// Assert
 	if assert.NoError(t, err) && assert.NotNil(t, vulnerabilitiesResults) {
@@ -126,7 +157,7 @@ func TestParseResults_ResultsContainSecrets(t *testing.T) {
 	secretScanManager.resultsFileName = filepath.Join(jas.GetTestDataPath(), "secrets-scan", "contain-secrets.sarif")
 
 	// Act
-	vulnerabilitiesResults, _, err := jas.ReadJasScanRunsFromFile(secretScanManager.resultsFileName, jfrogAppsConfigForTest.Modules[0].SourceRoot, secretsDocsUrlSuffix, severityutils.Medium)
+	vulnerabilitiesResults, _, err := jas.ReadJasScanRunsFromFile(secretScanManager.resultsFileName, secretsDocsUrlSuffix, severityutils.Medium, jfrogAppsConfigForTest.Modules[0].SourceRoot)
 
 	// Assert
 	if assert.NoError(t, err) && assert.NotNil(t, vulnerabilitiesResults) {
@@ -145,7 +176,13 @@ func TestGetSecretsScanResults_AnalyzerManagerReturnsError(t *testing.T) {
 	defer cleanUp()
 	jfrogAppsConfigForTest, err := jas.CreateJFrogAppsConfig([]string{})
 	assert.NoError(t, err)
-	vulnerabilitiesResults, _, err := RunSecretsScan(scanner, SecretsScannerType, jfrogAppsConfigForTest.Modules[0], 1, 0)
+	secretsScanParams := SecretsScanParams{
+		TargetCount: 1,
+		ScanType:    SecretsScannerType,
+		Module:      &jfrogAppsConfigForTest.Modules[0],
+		Target:      results.ScanTarget{Target: jfrogAppsConfigForTest.Modules[0].SourceRoot},
+	}
+	vulnerabilitiesResults, _, err := RunSecretsScan(scanner, secretsScanParams)
 	assert.Error(t, err)
 	assert.ErrorContains(t, jas.ParseAnalyzerManagerError(jasutils.Secrets, err), "failed to run Secrets scan")
 	assert.Nil(t, vulnerabilitiesResults)

From 12005ea498c7354695d0fb86ebabd72096819192 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Fri, 13 Feb 2026 10:30:35 +0200
Subject: [PATCH 06/26] new scan target detection logic

---
 commands/audit/audit.go | 49 ++++++++++++++++++++++++++---------------
 1 file changed, 31 insertions(+), 18 deletions(-)

diff --git a/commands/audit/audit.go b/commands/audit/audit.go
index f655d1ec5..030b5b007 100644
--- a/commands/audit/audit.go
+++ b/commands/audit/audit.go
@@ -178,6 +178,7 @@ func logScanPaths(workingDirs []string, isRecursiveScan bool) {
 
 func getTargetsInfo(auditCmd *AuditCommand) (workingDirs []string, isRecursiveScan, isSingleTarget bool, err error) {
 	if isNewFlow(auditCmd.bomGenerator) {
+		// In new flow, we always scan a single target. the SBOM lib can support multiple tech and directories. no need to detect them.
 		isSingleTarget = true
 	} else if utils.IsScanRequested(utils.SourceCode, utils.ScaScan, auditCmd.ScansToPerform()...) || auditCmd.IncludeSbom {
 		// Only in case of SCA scan / SBOM requested and if no workingDirs were provided by the user
@@ -315,7 +316,8 @@ func RunAudit(auditParams *AuditParams) (cmdResults *results.SecurityCommandResu
 		return
 	}
 	// Process the scan results and run additional steps if needed.
-	return processScanResults(auditParams, cmdResults)
+	// return processScanResults(auditParams, cmdResults)
+	return cmdResults
 }
 
 func prepareToScan(params *AuditParams) (cmdResults *results.SecurityCommandResults) {
@@ -485,28 +487,39 @@ func getTargetResultsToCompare(cmdResults, resultsToCompare *results.SecurityCom
 	return
 }
 
-// TODO: change
 func detectScanTargets(cmdResults *results.SecurityCommandResults, params *AuditParams) {
 	if params.IsSingleTarget() {
-		// NEW logic:
-		scanTarget := results.ScanTarget{Exclude: params.Exclusions()}
-		dirs := []string{}
-		for _, dir := range params.workingDirs {
-			if !fileutils.IsPathExists(dir, false) {
-				log.Warn("The working directory", dir, "doesn't exist. Skipping SCA scan...")
-				continue
-			}
-			dirs = append(dirs, dir)
+		createSingleScanTarget(cmdResults, params)
+		return
+	}
+	detectScaTargetsFromTechnologies(cmdResults, params)
+}
+
+func createSingleScanTarget(cmdResults *results.SecurityCommandResults, params *AuditParams) {
+	scanTarget := results.ScanTarget{Exclude: params.Exclusions()}
+	dirs := []string{}
+	for _, dir := range params.workingDirs {
+		if !fileutils.IsPathExists(dir, false) {
+			log.Warn("The working directory", dir, "doesn't exist. Skipping...")
+			continue
 		}
-		if len(dirs) == 1 {
-			scanTarget.Target = dirs[0]
-		} else {
-			scanTarget.Include = dirs
+		dirs = append(dirs, dir)
+	}
+	if len(dirs) == 1 {
+		scanTarget.Target = dirs[0]
+	} else {
+		cwd, err := coreutils.GetWorkingDirectory()
+		if err != nil {
+			log.Warn("Failed to get working directory. Skipping...")
+			return
 		}
-		cmdResults.NewScanResults(scanTarget)
-		return
+		scanTarget.Target = cwd
+		scanTarget.Include = dirs
 	}
-	// OLD logic:
+	cmdResults.NewScanResults(scanTarget)
+}
+
+func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults, params *AuditParams) {
 	for _, requestedDirectory := range params.workingDirs {
 		if !fileutils.IsPathExists(requestedDirectory, false) {
 			log.Warn("The working directory", requestedDirectory, "doesn't exist. Skipping SCA scan...")

From abc25bb7c1ae948941d80e28341ade77edc34da0 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Fri, 13 Feb 2026 23:34:28 +0200
Subject: [PATCH 07/26] start impl new flow in Secrets

---
 commands/audit/audit.go       | 13 +------------
 jas/secrets/secretsscanner.go |  2 +-
 utils/results/results.go      | 15 ++++++++++-----
 3 files changed, 12 insertions(+), 18 deletions(-)

diff --git a/commands/audit/audit.go b/commands/audit/audit.go
index 030b5b007..0368c782c 100644
--- a/commands/audit/audit.go
+++ b/commands/audit/audit.go
@@ -447,21 +447,10 @@ func populateScanTargets(cmdResults *results.SecurityCommandResults, params *Aud
 	logScanTargetsInfo(cmdResults)
 }
 
-// TODO: change
 func logScanTargetsInfo(cmdResults *results.SecurityCommandResults) {
 	// Print the scan targets
 	if len(cmdResults.Targets) == 1 {
-		outLog := "Performing scans on "
-		if cmdResults.Targets[0].Technology != techutils.NoTech {
-			outLog += fmt.Sprintf("%s ", cmdResults.Targets[0].Technology.String())
-		}
-		outLog += "project "
-		if cmdResults.Targets[0].Name != "" {
-			outLog += fmt.Sprintf("'%s' ", cmdResults.Targets[0].Name)
-		} else {
-			outLog += fmt.Sprintf("'%s' ", cmdResults.Targets[0].Target)
-		}
-		log.Info(outLog)
+		log.Info(fmt.Sprintf("Performing scans on project %s", cmdResults.Targets[0].String()))
 		return
 	}
 	scanInfo, err := coreutils.GetJsonIndent(cmdResults.GetTargets())
diff --git a/jas/secrets/secretsscanner.go b/jas/secrets/secretsscanner.go
index 62ee3cec6..60a7330c1 100644
--- a/jas/secrets/secretsscanner.go
+++ b/jas/secrets/secretsscanner.go
@@ -67,7 +67,7 @@ func RunSecretsScan(scanner *jas.JasScanner, params SecretsScanParams) (vulnerab
 }
 
 func runSecretsScan(secretScanManager *SecretScanManager, params SecretsScanParams) (vulnerabilitiesResults []*sarif.Run, violationsResults []*sarif.Run, err error) {
-	if params.Module == nil {
+	if params.Module == nil || len(params.Target.Include) > 0 {
 		return secretScanManager.scanner.Run(secretScanManager, params.Target)
 	}
 	return secretScanManager.scanner.DeprecatedRun(secretScanManager, *params.Module)
diff --git a/utils/results/results.go b/utils/results/results.go
index afd6fc718..e2f73695e 100644
--- a/utils/results/results.go
+++ b/utils/results/results.go
@@ -3,6 +3,7 @@ package results
 import (
 	"errors"
 	"fmt"
+	"strings"
 	"sync"
 	"time"
 
@@ -222,12 +223,16 @@ type ScanTarget struct {
 	Technology techutils.Technology `json:"technology,omitempty"`
 }
 
-func (st ScanTarget) Copy(newTarget string) ScanTarget {
-	return ScanTarget{Target: newTarget, Name: st.Name, Technology: st.Technology}
-}
-
 func (st ScanTarget) String() (str string) {
-	str = st.Target
+	if len(st.Include) > 0 {
+		relaivePaths := []string{}
+		for _, path := range st.Include {
+			relaivePaths = append(relaivePaths, utils.GetRelativePath(path, st.Target))
+		}
+		str = fmt.Sprintf("%s {%s}", st.Target, strings.Join(relaivePaths, ", "))
+	} else {
+		str = st.Target
+	}
 	if st.Name != "" {
 		str = st.Name
 	}

From 5fb9622f00e441db6dc43e3fa5acd084aca07bf0 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Mon, 16 Feb 2026 13:09:53 +0200
Subject: [PATCH 08/26] update xray lib to 0.0.3-47

---
 sca/bom/xrayplugin/plugin/plugin.go | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sca/bom/xrayplugin/plugin/plugin.go b/sca/bom/xrayplugin/plugin/plugin.go
index 7f8040939..a38aa4b2e 100644
--- a/sca/bom/xrayplugin/plugin/plugin.go
+++ b/sca/bom/xrayplugin/plugin/plugin.go
@@ -23,7 +23,7 @@ import (
 
 const (
 	xrayLibPluginVersionEnvVariable = "JFROG_CLI_XRAY_LIB_PLUGIN_VERSION"
-	defaultXrayLibPluginVersion     = "0.0.3-43"
+	defaultXrayLibPluginVersion     = "0.0.3-47"
 
 	xrayLibPluginRtRepository   = "xray-scan-lib"
 	XrayLibPluginExecutableName = "xray-scan-plugin"

From 1bff793ff00bd6c5a4652f18b442a3b0e87a5fb2 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Mon, 16 Feb 2026 13:25:59 +0200
Subject: [PATCH 09/26] fix tests

---
 git_test.go | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/git_test.go b/git_test.go
index a118d1ff6..9fef87c35 100644
--- a/git_test.go
+++ b/git_test.go
@@ -262,8 +262,8 @@ func TestGitAuditJasSkipNotApplicableCvesViolations(t *testing.T) {
 		xrayVersion, xscVersion, "",
 		validations.ValidationParams{
 			Violations: &validations.ViolationCount{
-				ValidateScan:                &validations.ScanCount{Sca: 9, Sast: 2, Secrets: 2},
-				ValidateApplicabilityStatus: &validations.ApplicabilityStatusCount{NotApplicable: 4, NotCovered: 5, Inactive: 2},
+				ValidateScan:                &validations.ScanCount{Sca: 10, Sast: 2, Secrets: 2},
+				ValidateApplicabilityStatus: &validations.ApplicabilityStatusCount{NotApplicable: 4, NotCovered: 6, Inactive: 2},
 			},
 			ExactResultsMatch: true,
 		},
@@ -290,8 +290,8 @@ func TestGitAuditJasSkipNotApplicableCvesViolations(t *testing.T) {
 		xrayVersion, xscVersion, "",
 		validations.ValidationParams{
 			Violations: &validations.ViolationCount{
-				ValidateScan:                &validations.ScanCount{Sca: 5, Sast: 2, Secrets: 2},
-				ValidateApplicabilityStatus: &validations.ApplicabilityStatusCount{NotCovered: 5, Inactive: 2},
+				ValidateScan:                &validations.ScanCount{Sca: 6, Sast: 2, Secrets: 2},
+				ValidateApplicabilityStatus: &validations.ApplicabilityStatusCount{NotCovered: 6, Inactive: 2},
 			},
 			ExactResultsMatch: true,
 		},

From 8eac51258aa53a7860e2c28d05a1b04693190a0e Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Tue, 17 Feb 2026 12:00:59 +0200
Subject: [PATCH 10/26] fix static tests

---
 commands/audit/audit.go  | 3 +--
 utils/results/results.go | 6 +++---
 2 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/commands/audit/audit.go b/commands/audit/audit.go
index 0368c782c..220f9faa0 100644
--- a/commands/audit/audit.go
+++ b/commands/audit/audit.go
@@ -316,8 +316,7 @@ func RunAudit(auditParams *AuditParams) (cmdResults *results.SecurityCommandResu
 		return
 	}
 	// Process the scan results and run additional steps if needed.
-	// return processScanResults(auditParams, cmdResults)
-	return cmdResults
+	return processScanResults(auditParams, cmdResults)
 }
 
 func prepareToScan(params *AuditParams) (cmdResults *results.SecurityCommandResults) {
diff --git a/utils/results/results.go b/utils/results/results.go
index e2f73695e..b13ac4292 100644
--- a/utils/results/results.go
+++ b/utils/results/results.go
@@ -225,11 +225,11 @@ type ScanTarget struct {
 
 func (st ScanTarget) String() (str string) {
 	if len(st.Include) > 0 {
-		relaivePaths := []string{}
+		relativePaths := []string{}
 		for _, path := range st.Include {
-			relaivePaths = append(relaivePaths, utils.GetRelativePath(path, st.Target))
+			relativePaths = append(relativePaths, utils.GetRelativePath(path, st.Target))
 		}
-		str = fmt.Sprintf("%s {%s}", st.Target, strings.Join(relaivePaths, ", "))
+		str = fmt.Sprintf("%s {%s}", st.Target, strings.Join(relativePaths, ", "))
 	} else {
 		str = st.Target
 	}

From 4711afb16cccebdfe2229bc27db6c80c2f87654c Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Thu, 19 Feb 2026 13:22:12 +0200
Subject: [PATCH 11/26] Fix target creation and JAS results parsing

---
 commands/audit/audit.go                   | 91 ++++++++++++-----------
 commands/audit/auditparams.go             | 16 +++-
 jas/applicability/applicabilitymanager.go |  4 +-
 jas/common.go                             | 15 ++++
 jas/iac/iacscanner.go                     |  4 +-
 jas/sast/sastscanner.go                   |  4 +-
 jas/secrets/secretsscanner.go             |  6 +-
 utils/paths.go                            | 12 +++
 8 files changed, 99 insertions(+), 53 deletions(-)

diff --git a/commands/audit/audit.go b/commands/audit/audit.go
index 220f9faa0..9982b90c3 100644
--- a/commands/audit/audit.go
+++ b/commands/audit/audit.go
@@ -176,7 +176,11 @@ func logScanPaths(workingDirs []string, isRecursiveScan bool) {
 	log.Info("Scanning paths:", strings.Join(workingDirs, ", "))
 }
 
-func getTargetsInfo(auditCmd *AuditCommand) (workingDirs []string, isRecursiveScan, isSingleTarget bool, err error) {
+func getTargetsInfo(auditCmd *AuditCommand) (includeDirs []string, isRecursiveScan, isSingleTarget bool, err error) {
+	includeDirs, err = utils.GetFullPathsWorkingDirs(auditCmd.workingDirs)
+	if err != nil {
+		return
+	}
 	if isNewFlow(auditCmd.bomGenerator) {
 		// In new flow, we always scan a single target. the SBOM lib can support multiple tech and directories. no need to detect them.
 		isSingleTarget = true
@@ -185,11 +189,7 @@ func getTargetsInfo(auditCmd *AuditCommand) (workingDirs []string, isRecursiveSc
 		// We apply a recursive scan on the root repository
 		isRecursiveScan = len(auditCmd.workingDirs) == 0
 	}
-	workingDirs, err = coreutils.GetFullPathsWorkingDirs(auditCmd.workingDirs)
-	if err != nil {
-		return
-	}
-	logScanPaths(workingDirs, isRecursiveScan)
+	logScanPaths(includeDirs, isRecursiveScan)
 	return
 }
 
@@ -201,7 +201,7 @@ func isNewFlow(bomGenerator bom.SbomGenerator) bool {
 }
 
 func (auditCmd *AuditCommand) Run() (err error) {
-	workingDirs, isRecursiveScan, isSingleTarget, err := getTargetsInfo(auditCmd)
+	includeDirs, isRecursiveScan, isSingleTarget, err := getTargetsInfo(auditCmd)
 	if err != nil {
 		return
 	}
@@ -226,7 +226,7 @@ func (auditCmd *AuditCommand) Run() (err error) {
 		SetViolationGenerator(auditCmd.violationGenerator).
 		SetRtResultRepository(auditCmd.rtResultRepository).
 		SetUploadCdxResults(auditCmd.uploadCdxResults).
-		SetWorkingDirs(workingDirs).
+		SetWorkingDirs(includeDirs).
 		SetIsSingleTarget(isSingleTarget).
 		SetMinSeverityFilter(auditCmd.minSeverityFilter).
 		SetFixableOnly(auditCmd.fixableOnly).
@@ -416,16 +416,8 @@ func isEntitledForJas(xrayManager *xray.XrayServicesManager, auditParams *AuditP
 func populateScanTargets(cmdResults *results.SecurityCommandResults, params *AuditParams) {
 	// Populate the scan targets based on the provided parameters.
 	detectScanTargets(cmdResults, params)
-	// Load apps config information
-	jfrogAppsConfig, err := jas.CreateJFrogAppsConfig(cmdResults.GetTargetsPaths())
-	if err != nil {
-		cmdResults.AddGeneralError(fmt.Errorf("failed to create JFrogAppsConfig: %s", err.Error()), false)
-		return
-	}
 	// Populate target information for the scans
 	for _, targetResult := range cmdResults.Targets {
-		// Get the apps config module and assign it to the target result for JAS scans.
-		targetResult.AppsConfigModule = jas.GetModule(targetResult.Target, jfrogAppsConfig)
 		// Generate SBOM for the target if requested or for SCA scans.
 		if !params.resultsContext.IncludeSbom && len(params.ScansToPerform()) > 0 && !slices.Contains(params.ScansToPerform(), utils.ScaScan) {
 			// No need to generate the SBOM if we are not going to use it.
@@ -476,15 +468,39 @@ func getTargetResultsToCompare(cmdResults, resultsToCompare *results.SecurityCom
 }
 
 func detectScanTargets(cmdResults *results.SecurityCommandResults, params *AuditParams) {
-	if params.IsSingleTarget() {
-		createSingleScanTarget(cmdResults, params)
+	deprecatedAppsConfig := params.DeprecatedAppsConfig()
+	if deprecatedAppsConfig == nil && !isNewFlow(params.bomGenerator) {
+		// Load deprecated apps config information
+		jfrogAppsConfig, err := jas.CreateJFrogAppsConfig(params.workingDirs)
+		if err != nil {
+			cmdResults.AddGeneralError(fmt.Errorf("failed to create JFrogAppsConfig: %s", err.Error()), false)
+			return
+		}
+		params.SetDeprecatedAppsConfig(jfrogAppsConfig)
+	}
+	cwd, err := coreutils.GetWorkingDirectory()
+	if err != nil {
+		cmdResults.AddGeneralError(fmt.Errorf("failed to get working directory: %s", err.Error()), false)
 		return
 	}
-	detectScaTargetsFromTechnologies(cmdResults, params)
+	// Create scan targets
+	if params.IsSingleTarget() {
+		createSingleScanTarget(cmdResults, params, cwd)
+	} else {
+		detectScaTargetsFromTechnologies(cmdResults, params, params.workingDirs)
+	}
+	// If no scan targets were detected, we should still proceed with the scans.
+	if len(params.workingDirs) == 1 && len(cmdResults.Targets) == 0 {
+		cmdResults.NewScanResults(results.ScanTarget{Target: cwd, Exclude: params.Exclusions()})
+	}
+	for _, targetResult := range cmdResults.Targets {
+		// Get the apps config module and assign it to the target result for JAS scans.
+		targetResult.AppsConfigModule = jas.GetModule(targetResult.Target, deprecatedAppsConfig)
+	}
 }
 
-func createSingleScanTarget(cmdResults *results.SecurityCommandResults, params *AuditParams) {
-	scanTarget := results.ScanTarget{Exclude: params.Exclusions()}
+func createSingleScanTarget(cmdResults *results.SecurityCommandResults, params *AuditParams, cwd string) {
+	scanTarget := results.ScanTarget{Target: cwd, Exclude: params.Exclusions()}
 	dirs := []string{}
 	for _, dir := range params.workingDirs {
 		if !fileutils.IsPathExists(dir, false) {
@@ -493,22 +509,21 @@ func createSingleScanTarget(cmdResults *results.SecurityCommandResults, params *
 		}
 		dirs = append(dirs, dir)
 	}
-	if len(dirs) == 1 {
-		scanTarget.Target = dirs[0]
+	scanTarget.Include = dirs
+	if techToWorkingDirs, err := techutils.DetectTechnologiesDescriptors(cwd, true, params.Technologies(), getRequestedDescriptors(params), technologies.GetExcludePattern(params.GetConfigProfile(), true, scanTarget.Exclude...)); err != nil {
+		log.Warn("Couldn't detect technologies in", cwd, "directory.", err.Error())
 	} else {
-		cwd, err := coreutils.GetWorkingDirectory()
-		if err != nil {
-			log.Warn("Failed to get working directory. Skipping...")
-			return
+		for tech, _ := range techToWorkingDirs {
+			scanTarget.Technology = tech
+			// We only support one technology per target for now. should be extended in the future.
+			break
 		}
-		scanTarget.Target = cwd
-		scanTarget.Include = dirs
 	}
 	cmdResults.NewScanResults(scanTarget)
 }
 
-func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults, params *AuditParams) {
-	for _, requestedDirectory := range params.workingDirs {
+func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults, params *AuditParams, potentialScanTargets []string) {
+	for _, requestedDirectory := range potentialScanTargets {
 		if !fileutils.IsPathExists(requestedDirectory, false) {
 			log.Warn("The working directory", requestedDirectory, "doesn't exist. Skipping SCA scan...")
 			continue
@@ -540,10 +555,6 @@ func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults
 			}
 		}
 	}
-	// If no scan targets were detected, we should still proceed with the scans.
-	if len(params.workingDirs) == 1 && len(cmdResults.Targets) == 0 {
-		cmdResults.NewScanResults(results.ScanTarget{Target: params.workingDirs[0]})
-	}
 }
 
 func getRequestedDescriptors(params *AuditParams) map[techutils.Technology][]string {
@@ -681,13 +692,9 @@ func createJasScansTask(auditParallelRunner *utils.SecurityParallelRunner, scanR
 		log.Debug(clientutils.GetLogMsgPrefix(threadId, false) + fmt.Sprintf("Using analyzer manager executable at: %s", scanner.AnalyzerManager.AnalyzerManagerFullPath))
 		// Run JAS scanners for each scan target
 		for _, targetResult := range scanResults.Targets {
-			if targetResult.AppsConfigModule == nil {
-				if !isNewFlow {
-					log.Debug(fmt.Sprintf("can't find apps config module for path %s", targetResult.Target))
-				} else {
-					_ = targetResult.AddTargetError(fmt.Errorf("can't find module for path %s", targetResult.Target), auditParams.AllowPartialResults())
-					continue
-				}
+			if !isNewFlow && targetResult.AppsConfigModule == nil {
+				_ = targetResult.AddTargetError(fmt.Errorf("can't find module for path %s", targetResult.Target), auditParams.AllowPartialResults())
+				continue
 			}
 			params := runner.JasRunnerParams{
 				Runner:                 auditParallelRunner,
diff --git a/commands/audit/auditparams.go b/commands/audit/auditparams.go
index 332362a42..76a2224f2 100644
--- a/commands/audit/auditparams.go
+++ b/commands/audit/auditparams.go
@@ -3,6 +3,7 @@ package audit
 import (
 	"time"
 
+	jfrogappsconfig "github.com/jfrog/jfrog-apps-config/go"
 	"github.com/jfrog/jfrog-client-go/xray/services"
 	xscServices "github.com/jfrog/jfrog-client-go/xsc/services"
 
@@ -18,11 +19,13 @@ import (
 )
 
 type AuditParams struct {
+	// Where to scan
+	appsConfig     *jfrogappsconfig.JFrogAppsConfig
+	workingDirs    []string
+	isSingleTarget bool
 	// Common params to all scan routines
 	resultsContext    results.ResultContext
 	gitContext        *xscServices.XscGitInfoContext
-	workingDirs       []string
-	isSingleTarget    bool
 	installFunc       func(tech string) error
 	fixableOnly       bool
 	minSeverityFilter severityutils.Severity
@@ -273,6 +276,15 @@ func (params *AuditParams) SetFilesToScan(filesToScan []string) *AuditParams {
 	return params
 }
 
+func (params *AuditParams) SetDeprecatedAppsConfig(appsConfig *jfrogappsconfig.JFrogAppsConfig) *AuditParams {
+	params.appsConfig = appsConfig
+	return params
+}
+
+func (params *AuditParams) DeprecatedAppsConfig() *jfrogappsconfig.JFrogAppsConfig {
+	return params.appsConfig
+}
+
 func (params *AuditParams) FilesToScan() []string {
 	return params.filesToScan
 }
diff --git a/jas/applicability/applicabilitymanager.go b/jas/applicability/applicabilitymanager.go
index 74a233e1a..6bab5dba5 100644
--- a/jas/applicability/applicabilitymanager.go
+++ b/jas/applicability/applicabilitymanager.go
@@ -116,7 +116,7 @@ func (asm *ApplicabilityScanManager) Run(target results.ScanTarget) (vulnerabili
 	if err = asm.runAnalyzerManager(); err != nil {
 		return
 	}
-	return jas.ReadJasScanRunsFromFile(asm.resultsFileName, applicabilityDocsUrlSuffix, asm.scanner.MinSeverity, target.Include...)
+	return jas.ReadJasScanRunsFromFile(asm.resultsFileName, applicabilityDocsUrlSuffix, asm.scanner.MinSeverity, jas.GetWorkingDirsFromTarget(target)...)
 }
 
 func (asm *ApplicabilityScanManager) cvesExists() bool {
@@ -147,7 +147,7 @@ func (asm *ApplicabilityScanManager) createConfigFileForTarget(target results.Sc
 	configFileContent := applicabilityScanConfig{
 		Scans: []scanConfiguration{
 			{
-				Roots:                target.Include,
+				Roots:                jas.GetRootsFromTarget(target),
 				Output:               asm.resultsFileName,
 				Type:                 asm.commandType,
 				GrepDisable:          false,
diff --git a/jas/common.go b/jas/common.go
index 13ebba144..8947f6bbe 100644
--- a/jas/common.go
+++ b/jas/common.go
@@ -192,6 +192,18 @@ func (a *JasScanner) Run(scannerCmd ScannerCmd, target results.ScanTarget) (vuln
 	return scannerCmd.Run(target)
 }
 
+func GetRootsFromTarget(target results.ScanTarget) []string {
+	if len(target.Include) > 0 {
+		return target.Include
+	}
+	return []string{target.Target}
+}
+
+func GetWorkingDirsFromTarget(target results.ScanTarget) []string {
+	wd := []string{target.Target}
+	return append(wd, target.Include...)
+}
+
 func ReadJasScanRunsFromFile(fileName, informationUrlSuffix string, minSeverity severityutils.Severity, workingDirs ...string) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
 	violationFileName := fmt.Sprintf("%s_violations.sarif", strings.TrimSuffix(fileName, ".sarif"))
 	vulnFileExist, violationsFileExist, err := checkJasResultsFilesExist(fileName, violationFileName)
@@ -396,6 +408,9 @@ func GetTestDataPath() string {
 }
 
 func GetModule(root string, appConfig *jfrogappsconfig.JFrogAppsConfig) *jfrogappsconfig.Module {
+	if appConfig == nil || len(appConfig.Modules) == 0 {
+		return nil
+	}
 	for _, module := range appConfig.Modules {
 		if module.SourceRoot == root {
 			return &module
diff --git a/jas/iac/iacscanner.go b/jas/iac/iacscanner.go
index 101c86d4b..b4bfdb04a 100644
--- a/jas/iac/iacscanner.go
+++ b/jas/iac/iacscanner.go
@@ -102,7 +102,7 @@ func (iac *IacScanManager) Run(target results.ScanTarget) (vulnerabilitiesSarifR
 	if err = iac.runAnalyzerManager(); err != nil {
 		return
 	}
-	return jas.ReadJasScanRunsFromFile(iac.resultsFileName, iacDocsUrlSuffix, iac.scanner.MinSeverity, target.Include...)
+	return jas.ReadJasScanRunsFromFile(iac.resultsFileName, iacDocsUrlSuffix, iac.scanner.MinSeverity, jas.GetWorkingDirsFromTarget(target)...)
 }
 
 type iacScanConfig struct {
@@ -140,7 +140,7 @@ func (iac *IacScanManager) createConfigFileForTarget(target results.ScanTarget,
 	configFileContent := iacScanConfig{
 		Scans: []iacScanConfiguration{
 			{
-				Roots:                  target.Include,
+				Roots:                  jas.GetRootsFromTarget(target),
 				Output:                 iac.resultsFileName,
 				PathToResultsToCompare: iac.resultsToCompareFileName,
 				Type:                   iacScannerType,
diff --git a/jas/sast/sastscanner.go b/jas/sast/sastscanner.go
index 25dabf1a0..3e6f29981 100644
--- a/jas/sast/sastscanner.go
+++ b/jas/sast/sastscanner.go
@@ -109,7 +109,7 @@ func (ssm *SastScanManager) Run(target results.ScanTarget) (vulnerabilitiesSarif
 	if err = ssm.runAnalyzerManager(filepath.Dir(ssm.scanner.AnalyzerManager.AnalyzerManagerFullPath)); err != nil {
 		return
 	}
-	vulnerabilitiesSarifRuns, violationsSarifRuns, err = jas.ReadJasScanRunsFromFile(ssm.resultsFileName, sastDocsUrlSuffix, ssm.scanner.MinSeverity, target.Include...)
+	vulnerabilitiesSarifRuns, violationsSarifRuns, err = jas.ReadJasScanRunsFromFile(ssm.resultsFileName, sastDocsUrlSuffix, ssm.scanner.MinSeverity, jas.GetWorkingDirsFromTarget(target)...)
 	if err != nil {
 		return
 	}
@@ -172,7 +172,7 @@ func (ssm *SastScanManager) createConfigFileForTarget(target results.ScanTarget,
 		Scans: []scanConfiguration{
 			{
 				Type:                   sastScannerType,
-				Roots:                  target.Include,
+				Roots:                  jas.GetRootsFromTarget(target),
 				Output:                 ssm.resultsFileName,
 				PathToResultsToCompare: ssm.resultsToCompareFileName,
 				SastParameters: sastParameters{
diff --git a/jas/secrets/secretsscanner.go b/jas/secrets/secretsscanner.go
index 60a7330c1..3897faaa9 100644
--- a/jas/secrets/secretsscanner.go
+++ b/jas/secrets/secretsscanner.go
@@ -67,7 +67,7 @@ func RunSecretsScan(scanner *jas.JasScanner, params SecretsScanParams) (vulnerab
 }
 
 func runSecretsScan(secretScanManager *SecretScanManager, params SecretsScanParams) (vulnerabilitiesResults []*sarif.Run, violationsResults []*sarif.Run, err error) {
-	if params.Module == nil || len(params.Target.Include) > 0 {
+	if params.Module == nil {
 		return secretScanManager.scanner.Run(secretScanManager, params.Target)
 	}
 	return secretScanManager.scanner.DeprecatedRun(secretScanManager, *params.Module)
@@ -108,7 +108,7 @@ func (ssm *SecretScanManager) Run(target results.ScanTarget) (vulnerabilitiesSar
 	if err = ssm.runAnalyzerManager(); err != nil {
 		return
 	}
-	return jas.ReadJasScanRunsFromFile(ssm.resultsFileName, secretsDocsUrlSuffix, ssm.scanner.MinSeverity, target.Include...)
+	return jas.ReadJasScanRunsFromFile(ssm.resultsFileName, secretsDocsUrlSuffix, ssm.scanner.MinSeverity, jas.GetWorkingDirsFromTarget(target)...)
 }
 
 type secretsScanConfig struct {
@@ -146,7 +146,7 @@ func (s *SecretScanManager) createConfigFileForTarget(target results.ScanTarget,
 	configFileContent := secretsScanConfig{
 		Scans: []secretsScanConfiguration{
 			{
-				Roots:                  target.Include,
+				Roots:                  jas.GetRootsFromTarget(target),
 				Output:                 s.resultsFileName,
 				PathToResultsToCompare: s.resultsToCompareFileName,
 				Type:                   string(s.scanType),
diff --git a/utils/paths.go b/utils/paths.go
index 8dcb3011f..6c27137fc 100644
--- a/utils/paths.go
+++ b/utils/paths.go
@@ -83,6 +83,18 @@ func GetCurationNugetCacheFolder() (string, error) {
 	return filepath.Join(curationFolder, "nuget"), nil
 }
 
+func GetFullPathsWorkingDirs(workingDirs []string) ([]string, error) {
+	var fullPathsWorkingDirs []string
+	for _, wd := range workingDirs {
+		fullPathWd, err := filepath.Abs(wd)
+		if err != nil {
+			return nil, err
+		}
+		fullPathsWorkingDirs = append(fullPathsWorkingDirs, fullPathWd)
+	}
+	return fullPathsWorkingDirs, nil
+}
+
 func GetRelativePath(fullPathWd, baseWd string) string {
 	// Remove OS-specific file prefix
 	if strings.HasPrefix(fullPathWd, "file:///private") {

From d0f5aed6da6a67b8e8302b9fc0ab36403f86032b Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Thu, 19 Feb 2026 15:17:48 +0200
Subject: [PATCH 12/26] pass target to applicable, fix invocations

---
 jas/applicability/applicabilitymanager.go |  2 +-
 jas/common.go                             | 20 ++++++++++++--------
 jas/iac/iacscanner.go                     |  2 +-
 jas/runner/jasrunner.go                   |  1 +
 jas/sast/sastscanner.go                   |  2 +-
 jas/secrets/secretsscanner.go             |  2 +-
 6 files changed, 17 insertions(+), 12 deletions(-)

diff --git a/jas/applicability/applicabilitymanager.go b/jas/applicability/applicabilitymanager.go
index 6bab5dba5..07b3ac565 100644
--- a/jas/applicability/applicabilitymanager.go
+++ b/jas/applicability/applicabilitymanager.go
@@ -116,7 +116,7 @@ func (asm *ApplicabilityScanManager) Run(target results.ScanTarget) (vulnerabili
 	if err = asm.runAnalyzerManager(); err != nil {
 		return
 	}
-	return jas.ReadJasScanRunsFromFile(asm.resultsFileName, applicabilityDocsUrlSuffix, asm.scanner.MinSeverity, jas.GetWorkingDirsFromTarget(target)...)
+	return jas.ReadJasScanRunsFromFile(asm.resultsFileName, applicabilityDocsUrlSuffix, asm.scanner.MinSeverity, target.Target, target.Include...)
 }
 
 func (asm *ApplicabilityScanManager) cvesExists() bool {
diff --git a/jas/common.go b/jas/common.go
index 8947f6bbe..0eb65400c 100644
--- a/jas/common.go
+++ b/jas/common.go
@@ -204,7 +204,7 @@ func GetWorkingDirsFromTarget(target results.ScanTarget) []string {
 	return append(wd, target.Include...)
 }
 
-func ReadJasScanRunsFromFile(fileName, informationUrlSuffix string, minSeverity severityutils.Severity, workingDirs ...string) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+func ReadJasScanRunsFromFile(fileName, informationUrlSuffix string, minSeverity severityutils.Severity, target string, includeDirs ...string) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
 	violationFileName := fmt.Sprintf("%s_violations.sarif", strings.TrimSuffix(fileName, ".sarif"))
 	vulnFileExist, violationsFileExist, err := checkJasResultsFilesExist(fileName, violationFileName)
 	if err != nil {
@@ -215,13 +215,13 @@ func ReadJasScanRunsFromFile(fileName, informationUrlSuffix string, minSeverity
 		return
 	}
 	if vulnFileExist {
-		vulnerabilitiesSarifRuns, err = readJasScanRunsFromFile(fileName, informationUrlSuffix, minSeverity, workingDirs...)
+		vulnerabilitiesSarifRuns, err = readJasScanRunsFromFile(fileName, informationUrlSuffix, minSeverity, target, includeDirs...)
 		if err != nil {
 			return
 		}
 	}
 	if violationsFileExist {
-		violationsSarifRuns, err = readJasScanRunsFromFile(violationFileName, informationUrlSuffix, minSeverity, workingDirs...)
+		violationsSarifRuns, err = readJasScanRunsFromFile(violationFileName, informationUrlSuffix, minSeverity, target, includeDirs...)
 	}
 	return
 }
@@ -236,18 +236,18 @@ func checkJasResultsFilesExist(vulnFileName, violationsFileName string) (vulnFil
 	return
 }
 
-func readJasScanRunsFromFile(fileName, informationUrlSuffix string, minSeverity severityutils.Severity, workingDirs ...string) (sarifRuns []*sarif.Run, err error) {
+func readJasScanRunsFromFile(fileName, informationUrlSuffix string, minSeverity severityutils.Severity, target string, includeDirs ...string) (sarifRuns []*sarif.Run, err error) {
 	if sarifRuns, err = sarifutils.ReadScanRunsFromFile(fileName); err != nil {
 		return
 	}
-	processSarifRuns(sarifRuns, informationUrlSuffix, minSeverity, workingDirs...)
+	processSarifRuns(sarifRuns, informationUrlSuffix, minSeverity, target, includeDirs...)
 	return
 }
 
 // This function processes the Sarif runs results: update invocations, fill missing information, exclude results and adding scores to rules
-func processSarifRuns(sarifRuns []*sarif.Run, informationUrlSuffix string, minSeverity severityutils.Severity, workingDirs ...string) {
+func processSarifRuns(sarifRuns []*sarif.Run, informationUrlSuffix string, minSeverity severityutils.Severity, target string, includeDirs ...string) {
 	for _, sarifRun := range sarifRuns {
-		fillMissingRequiredInvocationInformation(sarifRun, workingDirs...)
+		fillMissingRequiredInvocationInformation(sarifRun, target, includeDirs...)
 		fillMissingRequiredDriverInformation(utils.BaseDocumentationURL+informationUrlSuffix, GetAnalyzerManagerVersion(), sarifRun)
 		addScoreToRunRules(sarifRun)
 		// Process results
@@ -275,12 +275,16 @@ func isValidVersion(version string) bool {
 	return unicode.IsDigit(firstChar)
 }
 
-func fillMissingRequiredInvocationInformation(run *sarif.Run, workingDirs ...string) {
+func fillMissingRequiredInvocationInformation(run *sarif.Run, target string, includeDirs ...string) {
 	isExeSuccess := false
 	for _, invocation := range run.Invocations {
 		isExeSuccess = isExeSuccess || (invocation.ExecutionSuccessful != nil && *invocation.ExecutionSuccessful)
 	}
 	invocations := []*sarif.Invocation{}
+	workingDirs := []string{target}
+	if len(includeDirs) > 0 {
+		workingDirs = includeDirs
+	}
 	for _, wd := range workingDirs {
 		// Set the actual working directory to the invocation, not the analyzerManager directory
 		invocation := sarif.NewInvocation().WithExecutionSuccessful(isExeSuccess).WithWorkingDirectory(sarif.NewArtifactLocation().WithURI(utils.ToURI(wd)))
diff --git a/jas/iac/iacscanner.go b/jas/iac/iacscanner.go
index b4bfdb04a..9a9d4bfca 100644
--- a/jas/iac/iacscanner.go
+++ b/jas/iac/iacscanner.go
@@ -102,7 +102,7 @@ func (iac *IacScanManager) Run(target results.ScanTarget) (vulnerabilitiesSarifR
 	if err = iac.runAnalyzerManager(); err != nil {
 		return
 	}
-	return jas.ReadJasScanRunsFromFile(iac.resultsFileName, iacDocsUrlSuffix, iac.scanner.MinSeverity, jas.GetWorkingDirsFromTarget(target)...)
+	return jas.ReadJasScanRunsFromFile(iac.resultsFileName, iacDocsUrlSuffix, iac.scanner.MinSeverity, target.Target, target.Include...)
 }
 
 type iacScanConfig struct {
diff --git a/jas/runner/jasrunner.go b/jas/runner/jasrunner.go
index 46070036d..8026f00bd 100644
--- a/jas/runner/jasrunner.go
+++ b/jas/runner/jasrunner.go
@@ -232,6 +232,7 @@ func runContextualScan(params *JasRunnerParams) parallel.TaskFunc {
 				ThreadId:                     threadId,
 				TargetCount:                  params.TargetCount,
 				Module:                       params.Module,
+				Target:                       params.ScanResults.ScanTarget,
 			},
 			params.Scanner,
 		)
diff --git a/jas/sast/sastscanner.go b/jas/sast/sastscanner.go
index 3e6f29981..90264d205 100644
--- a/jas/sast/sastscanner.go
+++ b/jas/sast/sastscanner.go
@@ -109,7 +109,7 @@ func (ssm *SastScanManager) Run(target results.ScanTarget) (vulnerabilitiesSarif
 	if err = ssm.runAnalyzerManager(filepath.Dir(ssm.scanner.AnalyzerManager.AnalyzerManagerFullPath)); err != nil {
 		return
 	}
-	vulnerabilitiesSarifRuns, violationsSarifRuns, err = jas.ReadJasScanRunsFromFile(ssm.resultsFileName, sastDocsUrlSuffix, ssm.scanner.MinSeverity, jas.GetWorkingDirsFromTarget(target)...)
+	vulnerabilitiesSarifRuns, violationsSarifRuns, err = jas.ReadJasScanRunsFromFile(ssm.resultsFileName, sastDocsUrlSuffix, ssm.scanner.MinSeverity, target.Target, target.Include...)
 	if err != nil {
 		return
 	}
diff --git a/jas/secrets/secretsscanner.go b/jas/secrets/secretsscanner.go
index 3897faaa9..903b345ae 100644
--- a/jas/secrets/secretsscanner.go
+++ b/jas/secrets/secretsscanner.go
@@ -108,7 +108,7 @@ func (ssm *SecretScanManager) Run(target results.ScanTarget) (vulnerabilitiesSar
 	if err = ssm.runAnalyzerManager(); err != nil {
 		return
 	}
-	return jas.ReadJasScanRunsFromFile(ssm.resultsFileName, secretsDocsUrlSuffix, ssm.scanner.MinSeverity, jas.GetWorkingDirsFromTarget(target)...)
+	return jas.ReadJasScanRunsFromFile(ssm.resultsFileName, secretsDocsUrlSuffix, ssm.scanner.MinSeverity, target.Target, target.Include...)
 }
 
 type secretsScanConfig struct {

From 803b1154a18b6c4ebebe008d02b4ad236f8c0cba Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Thu, 19 Feb 2026 16:03:29 +0200
Subject: [PATCH 13/26] fix get cwd as path in old flow and tech aggregator for
 target

---
 commands/audit/audit.go | 50 ++++++++++++++++++++++++++++-------------
 1 file changed, 34 insertions(+), 16 deletions(-)

diff --git a/commands/audit/audit.go b/commands/audit/audit.go
index 9982b90c3..197735bbd 100644
--- a/commands/audit/audit.go
+++ b/commands/audit/audit.go
@@ -7,6 +7,7 @@ import (
 	"strconv"
 	"strings"
 
+	"github.com/jfrog/gofrog/datastructures"
 	"github.com/jfrog/gofrog/parallel"
 	"github.com/jfrog/jfrog-cli-core/v2/common/format"
 	"github.com/jfrog/jfrog-cli-core/v2/utils/config"
@@ -487,11 +488,7 @@ func detectScanTargets(cmdResults *results.SecurityCommandResults, params *Audit
 	if params.IsSingleTarget() {
 		createSingleScanTarget(cmdResults, params, cwd)
 	} else {
-		detectScaTargetsFromTechnologies(cmdResults, params, params.workingDirs)
-	}
-	// If no scan targets were detected, we should still proceed with the scans.
-	if len(params.workingDirs) == 1 && len(cmdResults.Targets) == 0 {
-		cmdResults.NewScanResults(results.ScanTarget{Target: cwd, Exclude: params.Exclusions()})
+		detectScaTargetsFromTechnologies(cmdResults, params, cwd)
 	}
 	for _, targetResult := range cmdResults.Targets {
 		// Get the apps config module and assign it to the target result for JAS scans.
@@ -501,28 +498,45 @@ func detectScanTargets(cmdResults *results.SecurityCommandResults, params *Audit
 
 func createSingleScanTarget(cmdResults *results.SecurityCommandResults, params *AuditParams, cwd string) {
 	scanTarget := results.ScanTarget{Target: cwd, Exclude: params.Exclusions()}
-	dirs := []string{}
+	// Resolve working dirs to include
+	dirs := datastructures.MakeSet[string]()
 	for _, dir := range params.workingDirs {
 		if !fileutils.IsPathExists(dir, false) {
 			log.Warn("The working directory", dir, "doesn't exist. Skipping...")
 			continue
 		}
-		dirs = append(dirs, dir)
+		// check path is not cwd
+		if dir == cwd {
+			continue
+		}
+		dirs.Add(dir)
 	}
-	scanTarget.Include = dirs
-	if techToWorkingDirs, err := techutils.DetectTechnologiesDescriptors(cwd, true, params.Technologies(), getRequestedDescriptors(params), technologies.GetExcludePattern(params.GetConfigProfile(), true, scanTarget.Exclude...)); err != nil {
-		log.Warn("Couldn't detect technologies in", cwd, "directory.", err.Error())
-	} else {
-		for tech, _ := range techToWorkingDirs {
-			scanTarget.Technology = tech
-			// We only support one technology per target for now. should be extended in the future.
-			break
+	scanTarget.Include = dirs.ToSlice()
+	// Detect technologies
+	detectedTechnologies := datastructures.MakeSet[techutils.Technology]()
+	for _, included := range jas.GetRootsFromTarget(scanTarget) {
+		techToWorkingDirs, err := techutils.DetectTechnologiesDescriptors(included, included == cwd, params.Technologies(), getRequestedDescriptors(params), technologies.GetExcludePattern(params.GetConfigProfile(), included == cwd, scanTarget.Exclude...))
+		if err != nil {
+			log.Warn("Couldn't detect technologies in", included, "directory.", err.Error())
+			continue
+		}
+		for tech := range techToWorkingDirs {
+			detectedTechnologies.Add(tech)
 		}
 	}
+	for _, tech := range detectedTechnologies.ToSlice() {
+		// TODO: We only support one technology per target for now. should be extended in the future.
+		scanTarget.Technology = tech
+		break
+	}
 	cmdResults.NewScanResults(scanTarget)
 }
 
-func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults, params *AuditParams, potentialScanTargets []string) {
+func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults, params *AuditParams, cwd string) {
+	potentialScanTargets := []string{cwd}
+	if len(params.workingDirs) > 1 {
+		potentialScanTargets = params.workingDirs
+	}
 	for _, requestedDirectory := range potentialScanTargets {
 		if !fileutils.IsPathExists(requestedDirectory, false) {
 			log.Warn("The working directory", requestedDirectory, "doesn't exist. Skipping SCA scan...")
@@ -555,6 +569,10 @@ func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults
 			}
 		}
 	}
+	// If no scan targets were detected, we should still proceed with the scans.
+	if len(potentialScanTargets) == 1 && len(cmdResults.Targets) == 0 {
+		cmdResults.NewScanResults(results.ScanTarget{Target: cwd, Exclude: params.Exclusions()})
+	}
 }
 
 func getRequestedDescriptors(params *AuditParams) map[techutils.Technology][]string {

From 1c8f55d622a8bf37720626e87308ba027f3f6e8a Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Thu, 19 Feb 2026 16:42:05 +0200
Subject: [PATCH 14/26] fix wd in sarif

---
 jas/common.go                          | 30 +++++++-------------------
 utils/formats/sarifutils/sarifutils.go |  9 ++++++++
 2 files changed, 17 insertions(+), 22 deletions(-)

diff --git a/jas/common.go b/jas/common.go
index 0eb65400c..fab994b8c 100644
--- a/jas/common.go
+++ b/jas/common.go
@@ -280,30 +280,16 @@ func fillMissingRequiredInvocationInformation(run *sarif.Run, target string, inc
 	for _, invocation := range run.Invocations {
 		isExeSuccess = isExeSuccess || (invocation.ExecutionSuccessful != nil && *invocation.ExecutionSuccessful)
 	}
-	invocations := []*sarif.Invocation{}
-	workingDirs := []string{target}
+	// Set the actual working directory to the invocation, not the analyzerManager directory
+	wd := sarif.NewArtifactLocation().WithURI(utils.ToURI(target))
 	if len(includeDirs) > 0 {
-		workingDirs = includeDirs
-	}
-	for _, wd := range workingDirs {
-		// Set the actual working directory to the invocation, not the analyzerManager directory
-		invocation := sarif.NewInvocation().WithExecutionSuccessful(isExeSuccess).WithWorkingDirectory(sarif.NewArtifactLocation().WithURI(utils.ToURI(wd)))
-		// Make sure the invocation not omitted attributes are set (the lib reports them as required but spec says they are optional)
-		if len(invocation.NotificationConfigurationOverrides) == 0 {
-			invocation.NotificationConfigurationOverrides = make([]*sarif.ConfigurationOverride, 0)
-		}
-		if len(invocation.RuleConfigurationOverrides) == 0 {
-			invocation.RuleConfigurationOverrides = make([]*sarif.ConfigurationOverride, 0)
-		}
-		if len(invocation.ToolConfigurationNotifications) == 0 {
-			invocation.ToolConfigurationNotifications = make([]*sarif.Notification, 0)
-		}
-		if len(invocation.ToolExecutionNotifications) == 0 {
-			invocation.ToolExecutionNotifications = make([]*sarif.Notification, 0)
-		}
-		invocations = append(invocations, invocation)
+		// Add properties to the working directory
+		properties := sarif.NewPropertyBag()
+		properties.Add("include", strings.Join(includeDirs, ","))
+		wd.Properties = properties
 	}
-	run.Invocations = invocations
+	invocation := sarifutils.CreateNewInvocation().WithExecutionSuccessful(isExeSuccess).WithWorkingDirectory(wd)
+	run.Invocations = []*sarif.Invocation{invocation}
 }
 
 func excludeSuppressResults(sarifResults []*sarif.Result) []*sarif.Result {
diff --git a/utils/formats/sarifutils/sarifutils.go b/utils/formats/sarifutils/sarifutils.go
index d0d145e7c..cce03dcd7 100644
--- a/utils/formats/sarifutils/sarifutils.go
+++ b/utils/formats/sarifutils/sarifutils.go
@@ -886,6 +886,15 @@ func GetInvocationWorkingDirectory(invocation *sarif.Invocation) string {
 	return ""
 }
 
+func CreateNewInvocation() *sarif.Invocation {
+	invocation := sarif.NewInvocation()
+	invocation.NotificationConfigurationOverrides = make([]*sarif.ConfigurationOverride, 0)
+	invocation.RuleConfigurationOverrides = make([]*sarif.ConfigurationOverride, 0)
+	invocation.ToolConfigurationNotifications = make([]*sarif.Notification, 0)
+	invocation.ToolExecutionNotifications = make([]*sarif.Notification, 0)
+	return invocation
+}
+
 func GetRulesPropertyCount(property, value string, runs ...*sarif.Run) (count int) {
 	for _, run := range runs {
 		for _, rule := range run.Tool.Driver.Rules {

From c1d2f086d1005f8252f34e1c287bd05dc9481b60 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Thu, 19 Feb 2026 16:42:22 +0200
Subject: [PATCH 15/26] fix get module for old flow

---
 commands/audit/audit.go | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/commands/audit/audit.go b/commands/audit/audit.go
index 197735bbd..85ed75cf1 100644
--- a/commands/audit/audit.go
+++ b/commands/audit/audit.go
@@ -469,8 +469,7 @@ func getTargetResultsToCompare(cmdResults, resultsToCompare *results.SecurityCom
 }
 
 func detectScanTargets(cmdResults *results.SecurityCommandResults, params *AuditParams) {
-	deprecatedAppsConfig := params.DeprecatedAppsConfig()
-	if deprecatedAppsConfig == nil && !isNewFlow(params.bomGenerator) {
+	if params.DeprecatedAppsConfig() == nil && !isNewFlow(params.bomGenerator) {
 		// Load deprecated apps config information
 		jfrogAppsConfig, err := jas.CreateJFrogAppsConfig(params.workingDirs)
 		if err != nil {
@@ -492,7 +491,7 @@ func detectScanTargets(cmdResults *results.SecurityCommandResults, params *Audit
 	}
 	for _, targetResult := range cmdResults.Targets {
 		// Get the apps config module and assign it to the target result for JAS scans.
-		targetResult.AppsConfigModule = jas.GetModule(targetResult.Target, deprecatedAppsConfig)
+		targetResult.AppsConfigModule = jas.GetModule(targetResult.Target, params.DeprecatedAppsConfig())
 	}
 }
 

From f6fb8917a0aab34f2204f9aae35939684de7b7ef Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Thu, 19 Feb 2026 17:06:24 +0200
Subject: [PATCH 16/26] make sure sarif sca invocation also include the
 included wd

---
 jas/common.go                                     | 10 +---------
 utils/formats/sarifutils/sarifutils.go            | 15 +++++++++------
 .../results/conversion/sarifparser/sarifparser.go |  5 +----
 3 files changed, 11 insertions(+), 19 deletions(-)

diff --git a/jas/common.go b/jas/common.go
index fab994b8c..e0efc8e1e 100644
--- a/jas/common.go
+++ b/jas/common.go
@@ -281,15 +281,7 @@ func fillMissingRequiredInvocationInformation(run *sarif.Run, target string, inc
 		isExeSuccess = isExeSuccess || (invocation.ExecutionSuccessful != nil && *invocation.ExecutionSuccessful)
 	}
 	// Set the actual working directory to the invocation, not the analyzerManager directory
-	wd := sarif.NewArtifactLocation().WithURI(utils.ToURI(target))
-	if len(includeDirs) > 0 {
-		// Add properties to the working directory
-		properties := sarif.NewPropertyBag()
-		properties.Add("include", strings.Join(includeDirs, ","))
-		wd.Properties = properties
-	}
-	invocation := sarifutils.CreateNewInvocation().WithExecutionSuccessful(isExeSuccess).WithWorkingDirectory(wd)
-	run.Invocations = []*sarif.Invocation{invocation}
+	run.Invocations = []*sarif.Invocation{sarifutils.CreateNewInvocation(isExeSuccess, target, includeDirs...)}
 }
 
 func excludeSuppressResults(sarifResults []*sarif.Result) []*sarif.Result {
diff --git a/utils/formats/sarifutils/sarifutils.go b/utils/formats/sarifutils/sarifutils.go
index cce03dcd7..0fa3189a0 100644
--- a/utils/formats/sarifutils/sarifutils.go
+++ b/utils/formats/sarifutils/sarifutils.go
@@ -886,12 +886,15 @@ func GetInvocationWorkingDirectory(invocation *sarif.Invocation) string {
 	return ""
 }
 
-func CreateNewInvocation() *sarif.Invocation {
-	invocation := sarif.NewInvocation()
-	invocation.NotificationConfigurationOverrides = make([]*sarif.ConfigurationOverride, 0)
-	invocation.RuleConfigurationOverrides = make([]*sarif.ConfigurationOverride, 0)
-	invocation.ToolConfigurationNotifications = make([]*sarif.Notification, 0)
-	invocation.ToolExecutionNotifications = make([]*sarif.Notification, 0)
+func CreateNewInvocation(success bool, target string, includeDirs ...string) *sarif.Invocation {
+	wd := sarif.NewArtifactLocation().WithURI(utils.ToURI(target))
+	if len(includeDirs) > 0 {
+		// Add properties to the working directory
+		properties := sarif.NewPropertyBag()
+		properties.Add("include", strings.Join(includeDirs, ","))
+		wd.Properties = properties
+	}
+	invocation := sarif.NewInvocation().WithExecutionSuccessful(success).WithWorkingDirectory(wd)
 	return invocation
 }
 
diff --git a/utils/results/conversion/sarifparser/sarifparser.go b/utils/results/conversion/sarifparser/sarifparser.go
index e93b9e2f7..c762c7c59 100644
--- a/utils/results/conversion/sarifparser/sarifparser.go
+++ b/utils/results/conversion/sarifparser/sarifparser.go
@@ -178,10 +178,7 @@ func (sc *CmdResultsSarifConverter) createScaRun(target results.ScanTarget, erro
 		// For binary, the target is a file and not a directory
 		wd = filepath.Dir(wd)
 	}
-	run.Invocations = append(run.Invocations, sarif.NewInvocation().
-		WithWorkingDirectory(sarif.NewSimpleArtifactLocation(utils.ToURI(wd))).
-		WithExecutionSuccessful(errorCount == 0),
-	)
+	run.Invocations = append(run.Invocations, sarifutils.CreateNewInvocation(errorCount == 0, wd, target.Include...))
 	return run
 }
 

From 4f2aa4b241a659f8ec59069335c623000f3f58a1 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Sat, 21 Feb 2026 12:19:29 +0200
Subject: [PATCH 17/26] move configs to ScanTarget. refactor and fix exclude
 for target and scans

---
 commands/audit/audit.go                       | 55 +++++++++----
 commands/audit/auditparams.go                 |  2 +-
 commands/curation/curationaudit.go            |  2 +-
 commands/scan/scan.go                         |  8 +-
 jas/applicability/applicabilitymanager.go     | 19 +++--
 .../applicabilitymanager_test.go              |  2 +-
 jas/common.go                                 | 76 ++++++++++--------
 jas/common_test.go                            | 20 ++---
 jas/iac/iacscanner.go                         | 19 +++--
 jas/iac/iacscanner_test.go                    |  2 +-
 jas/maliciouscode/maliciouscodescanner.go     |  2 +-
 jas/runner/jasrunner.go                       | 31 ++------
 jas/runner/jasrunner_test.go                  |  2 +-
 jas/sast/sastscanner.go                       | 19 +++--
 jas/secrets/secretsscanner.go                 | 19 +++--
 jas/secrets/secretsscanner_test.go            |  5 +-
 sca/bom/buildinfo/technologies/common.go      |  2 +-
 sca/bom/buildinfo/technologies/common_test.go |  4 +-
 sca/scan/scascan.go                           | 12 +--
 utils/paths.go                                | 12 +++
 utils/results/results.go                      | 78 ++++++++++++++++++-
 utils/utils.go                                | 17 ++++
 22 files changed, 261 insertions(+), 147 deletions(-)

diff --git a/commands/audit/audit.go b/commands/audit/audit.go
index 85ed75cf1..1808e2cfe 100644
--- a/commands/audit/audit.go
+++ b/commands/audit/audit.go
@@ -40,7 +40,7 @@ import (
 	"github.com/jfrog/jfrog-client-go/utils/log"
 	"github.com/jfrog/jfrog-client-go/xray"
 	"github.com/jfrog/jfrog-client-go/xray/services"
-	xscservices "github.com/jfrog/jfrog-client-go/xsc/services"
+	xscServices "github.com/jfrog/jfrog-client-go/xsc/services"
 	xscutils "github.com/jfrog/jfrog-client-go/xsc/services/utils"
 )
 
@@ -215,7 +215,7 @@ func (auditCmd *AuditCommand) Run() (err error) {
 		auditCmd.GetXrayVersion(),
 		auditCmd.GetXscVersion(),
 		serverDetails,
-		xsc.CreateAnalyticsEvent(xscservices.CliProduct, xscservices.CliEventType, serverDetails),
+		xsc.CreateAnalyticsEvent(xscServices.CliProduct, xscServices.CliEventType, serverDetails),
 		auditCmd.projectKey,
 	)
 
@@ -489,10 +489,8 @@ func detectScanTargets(cmdResults *results.SecurityCommandResults, params *Audit
 	} else {
 		detectScaTargetsFromTechnologies(cmdResults, params, cwd)
 	}
-	for _, targetResult := range cmdResults.Targets {
-		// Get the apps config module and assign it to the target result for JAS scans.
-		targetResult.AppsConfigModule = jas.GetModule(targetResult.Target, params.DeprecatedAppsConfig())
-	}
+	// Match central config modules to the scan targets
+	matchCentralConfigModules(cmdResults, params.GetConfigProfile())
 }
 
 func createSingleScanTarget(cmdResults *results.SecurityCommandResults, params *AuditParams, cwd string) {
@@ -514,7 +512,7 @@ func createSingleScanTarget(cmdResults *results.SecurityCommandResults, params *
 	// Detect technologies
 	detectedTechnologies := datastructures.MakeSet[techutils.Technology]()
 	for _, included := range jas.GetRootsFromTarget(scanTarget) {
-		techToWorkingDirs, err := techutils.DetectTechnologiesDescriptors(included, included == cwd, params.Technologies(), getRequestedDescriptors(params), technologies.GetExcludePattern(params.GetConfigProfile(), included == cwd, scanTarget.Exclude...))
+		techToWorkingDirs, err := techutils.DetectTechnologiesDescriptors(included, included == cwd, params.Technologies(), getRequestedDescriptors(params), technologies.GetScaExcludePattern(params.GetConfigProfile(), included == cwd, scanTarget.Exclude...))
 		if err != nil {
 			log.Warn("Couldn't detect technologies in", included, "directory.", err.Error())
 			continue
@@ -531,6 +529,23 @@ func createSingleScanTarget(cmdResults *results.SecurityCommandResults, params *
 	cmdResults.NewScanResults(scanTarget)
 }
 
+func matchCentralConfigModules(cmdResults *results.SecurityCommandResults, centralProfile *xscServices.ConfigProfile) {
+	if centralProfile == nil {
+		return
+	}
+	if len(centralProfile.Modules) < 1 {
+		// Verify Modules are not nil and contain at least one modules
+		cmdResults.AddGeneralError(fmt.Errorf("config profile %s has no modules. A config profile must contain at least one modules", centralProfile.ProfileName), false)
+		return
+	}
+	for _, targetResult := range cmdResults.Targets {
+		// TODO: support matching multiple config modules to the scan targets
+		// currently only supported one config module for all targets to configure in the UI
+		// PathFromRoot is always '.'
+		targetResult.CentralConfigModules = centralProfile.Modules
+	}
+}
+
 func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults, params *AuditParams, cwd string) {
 	potentialScanTargets := []string{cwd}
 	if len(params.workingDirs) > 1 {
@@ -542,7 +557,7 @@ func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults
 			continue
 		}
 		// Detect descriptors and technologies in the requested directory.
-		techToWorkingDirs, err := techutils.DetectTechnologiesDescriptors(requestedDirectory, params.IsRecursiveScan(), params.Technologies(), getRequestedDescriptors(params), technologies.GetExcludePattern(params.GetConfigProfile(), params.IsRecursiveScan(), params.Exclusions()...))
+		techToWorkingDirs, err := techutils.DetectTechnologiesDescriptors(requestedDirectory, params.IsRecursiveScan(), params.Technologies(), getRequestedDescriptors(params), technologies.GetScaExcludePattern(params.GetConfigProfile(), params.IsRecursiveScan(), params.Exclusions()...))
 		if err != nil {
 			log.Warn("Couldn't detect technologies in", requestedDirectory, "directory.", err.Error())
 			continue
@@ -557,11 +572,21 @@ func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults
 			// No technology was detected, add scan without descriptors. (so no sca scan will be performed and set at target level)
 			if len(workingDirs) == 0 {
 				// Requested technology (from params) descriptors/indicators were not found or recursive scan with NoTech value, add scan without descriptors.
-				cmdResults.NewScanResults(results.ScanTarget{Target: requestedDirectory, Technology: tech, Exclude: params.Exclusions()})
+				cmdResults.NewScanResults(results.ScanTarget{
+					Target:                     requestedDirectory,
+					Technology:                 tech,
+					Exclude:                    params.Exclusions(),
+					DeprecatedAppsConfigModule: jas.GetModule(requestedDirectory, params.DeprecatedAppsConfig()),
+				})
 			}
 			for workingDir, descriptors := range workingDirs {
 				// Add scan for each detected working directory.
-				targetResults := cmdResults.NewScanResults(results.ScanTarget{Target: workingDir, Technology: tech, Exclude: params.Exclusions()})
+				targetResults := cmdResults.NewScanResults(results.ScanTarget{
+					Target:                     workingDir,
+					Technology:                 tech,
+					Exclude:                    params.Exclusions(),
+					DeprecatedAppsConfigModule: jas.GetModule(workingDir, params.DeprecatedAppsConfig()),
+				})
 				if tech != techutils.NoTech {
 					targetResults.SetDescriptors(descriptors...)
 				}
@@ -570,7 +595,11 @@ func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults
 	}
 	// If no scan targets were detected, we should still proceed with the scans.
 	if len(potentialScanTargets) == 1 && len(cmdResults.Targets) == 0 {
-		cmdResults.NewScanResults(results.ScanTarget{Target: cwd, Exclude: params.Exclusions()})
+		cmdResults.NewScanResults(results.ScanTarget{
+			Target:                     cwd,
+			Exclude:                    params.Exclusions(),
+			DeprecatedAppsConfigModule: jas.GetModule(cwd, params.DeprecatedAppsConfig()),
+		})
 	}
 }
 
@@ -669,7 +698,6 @@ func addJasScansToRunner(auditParallelRunner *utils.SecurityParallelRunner, audi
 		jas.WithResultsToCompare(auditParams.resultsToCompare),
 	}
 	jasScanner, err = jas.NewJasScanner(serverDetails, scannerOptions...)
-	jas.UpdateJasScannerWithExcludePatternsFromProfile(jasScanner, auditParams.GetConfigProfile())
 
 	auditParallelRunner.ResultsMu.Unlock()
 	if err != nil {
@@ -709,7 +737,7 @@ func createJasScansTask(auditParallelRunner *utils.SecurityParallelRunner, scanR
 		log.Debug(clientutils.GetLogMsgPrefix(threadId, false) + fmt.Sprintf("Using analyzer manager executable at: %s", scanner.AnalyzerManager.AnalyzerManagerFullPath))
 		// Run JAS scanners for each scan target
 		for _, targetResult := range scanResults.Targets {
-			if !isNewFlow && targetResult.AppsConfigModule == nil {
+			if !isNewFlow && targetResult.DeprecatedAppsConfigModule == nil {
 				_ = targetResult.AddTargetError(fmt.Errorf("can't find module for path %s", targetResult.Target), auditParams.AllowPartialResults())
 				continue
 			}
@@ -717,7 +745,6 @@ func createJasScansTask(auditParallelRunner *utils.SecurityParallelRunner, scanR
 				Runner:                 auditParallelRunner,
 				ServerDetails:          serverDetails,
 				Scanner:                scanner,
-				Module:                 targetResult.AppsConfigModule,
 				ConfigProfile:          auditParams.GetConfigProfile(),
 				ScansToPerform:         auditParams.ScansToPerform(),
 				SourceResultsToCompare: scanner.GetResultsToCompareByRelativePath(utils.GetRelativePath(targetResult.Target, scanResults.GetCommonParentPath())),
diff --git a/commands/audit/auditparams.go b/commands/audit/auditparams.go
index 76a2224f2..739a7a21b 100644
--- a/commands/audit/auditparams.go
+++ b/commands/audit/auditparams.go
@@ -225,7 +225,7 @@ func (params *AuditParams) ToBuildInfoBomGenParams() (bomParams technologies.Bui
 	bomParams = technologies.BuildInfoBomGeneratorParams{
 		XrayVersion:         params.GetXrayVersion(),
 		Progress:            params.Progress(),
-		ExclusionPattern:    technologies.GetExcludePattern(params.GetConfigProfile(), params.IsRecursiveScan(), params.Exclusions()...),
+		ExclusionPattern:    technologies.GetScaExcludePattern(params.GetConfigProfile(), params.IsRecursiveScan(), params.Exclusions()...),
 		AllowPartialResults: params.AllowPartialResults(),
 		// Artifactory repository info
 		ServerDetails:          serverDetails,
diff --git a/commands/curation/curationaudit.go b/commands/curation/curationaudit.go
index ab066d8e9..d6c53b6d5 100644
--- a/commands/curation/curationaudit.go
+++ b/commands/curation/curationaudit.go
@@ -430,7 +430,7 @@ func (ca *CurationAuditCommand) getBuildInfoParamsByTech() (technologies.BuildIn
 	serverDetails, err := ca.ServerDetails()
 	return technologies.BuildInfoBomGeneratorParams{
 		XrayVersion:      ca.GetXrayVersion(),
-		ExclusionPattern: technologies.GetExcludePattern(ca.GetConfigProfile(), ca.IsRecursiveScan(), ca.Exclusions()...),
+		ExclusionPattern: technologies.GetScaExcludePattern(ca.GetConfigProfile(), ca.IsRecursiveScan(), ca.Exclusions()...),
 		Progress:         ca.Progress(),
 		// Artifactory Repository params
 		ServerDetails:          serverDetails,
diff --git a/commands/scan/scan.go b/commands/scan/scan.go
index 8da5d61d5..b9e106997 100644
--- a/commands/scan/scan.go
+++ b/commands/scan/scan.go
@@ -554,10 +554,11 @@ func (scanCmd *ScanCommand) getXrayScanGraphParams(msi string) *scangraph.ScanGr
 
 func (scanCmd *ScanCommand) RunBinaryJasScans(cmdType utils.CommandType, msi string, secretValidation bool, targetResults *results.TargetResults, targetCompId string, graphScanResults *services.ScanResponse, jasFileProducerConsumer *utils.SecurityParallelRunner, scanThreadId int) (err error) {
 	scanLogPrefix := clientutils.GetLogMsgPrefix(scanThreadId, false)
-	module, err := getJasModule(targetResults)
+	deprecatedAppsConfigModule, err := getJasDeprecatedAppsConfigModule(targetResults.Target)
 	if err != nil {
 		return targetResults.AddTargetError(fmt.Errorf(scanLogPrefix+"jas scanning failed with error: %s", err.Error()), false)
 	}
+	targetResults.DeprecatedAppsConfigModule = &deprecatedAppsConfigModule
 	// Prepare Jas scans
 	scannerOptions := []jas.JasScannerOption{
 		jas.WithEnvVars(
@@ -591,7 +592,6 @@ func (scanCmd *ScanCommand) RunBinaryJasScans(cmdType utils.CommandType, msi str
 		Runner:          jasFileProducerConsumer,
 		ServerDetails:   scanCmd.serverDetails,
 		Scanner:         scanner,
-		Module:          &module,
 		TargetOutputDir: scanCmd.outputDir,
 		ScansToPerform:  scanCmd.scansToPerform,
 		CvesProvider: func() (directCves []string, indirectCves []string) {
@@ -633,8 +633,8 @@ func isDockerBinary(cmdType utils.CommandType, targetResults *results.TargetResu
 	return cmdType == utils.DockerImage || targetResults.Technology == techutils.Docker || targetResults.Technology == techutils.Oci
 }
 
-func getJasModule(targetResults *results.TargetResults) (jfrogappsconfig.Module, error) {
-	jfrogAppsConfig, err := jas.CreateJFrogAppsConfig([]string{targetResults.Target})
+func getJasDeprecatedAppsConfigModule(target string) (jfrogappsconfig.Module, error) {
+	jfrogAppsConfig, err := jas.CreateJFrogAppsConfig([]string{target})
 	if err != nil {
 		return jfrogappsconfig.Module{}, err
 	}
diff --git a/jas/applicability/applicabilitymanager.go b/jas/applicability/applicabilitymanager.go
index 07b3ac565..939b639e2 100644
--- a/jas/applicability/applicabilitymanager.go
+++ b/jas/applicability/applicabilitymanager.go
@@ -45,7 +45,6 @@ type ContextualAnalysisScanParams struct {
 	ThirdPartyContextualAnalysis bool
 	ThreadId                     int
 	TargetCount                  int
-	Module                       *jfrogappsconfig.Module
 	Target                       results.ScanTarget
 }
 
@@ -65,7 +64,7 @@ func RunApplicabilityScan(params ContextualAnalysisScanParams, scanner *jas.JasS
 		return
 	}
 	startTime := time.Now()
-	log.Info(jas.GetStartJasScanLog(utils.ContextualAnalysisScan, params.ThreadId, params.Module, params.TargetCount))
+	log.Info(jas.GetStartJasScanLog(utils.ContextualAnalysisScan, params.ThreadId, params.Target.DeprecatedAppsConfigModule, params.TargetCount))
 	if results, err = runApplicabilityScan(applicabilityScanManager, params); err != nil {
 		return
 	}
@@ -77,13 +76,13 @@ func RunApplicabilityScan(params ContextualAnalysisScanParams, scanner *jas.JasS
 }
 
 func runApplicabilityScan(applicabilityScanManager *ApplicabilityScanManager, params ContextualAnalysisScanParams) (vulnerabilitiesSarifRuns []*sarif.Run, err error) {
-	if params.Module == nil {
+	if params.Target.DeprecatedAppsConfigModule == nil {
 		// Applicability scan does not produce violations.
 		vulnerabilitiesSarifRuns, _, err = applicabilityScanManager.scanner.Run(applicabilityScanManager, params.Target)
 		return
 	}
 	// Applicability scan does not produce violations.
-	vulnerabilitiesSarifRuns, _, err = applicabilityScanManager.scanner.DeprecatedRun(applicabilityScanManager, *params.Module)
+	vulnerabilitiesSarifRuns, _, err = applicabilityScanManager.scanner.DeprecatedRun(applicabilityScanManager, *params.Target.DeprecatedAppsConfigModule, params.Target.GetCentralConfigExclusions(utils.ContextualAnalysisScan))
 	return
 }
 
@@ -99,8 +98,8 @@ func newApplicabilityScanManager(directDependenciesCves, indirectDependenciesCve
 	}
 }
 
-func (asm *ApplicabilityScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
-	if err = asm.deprecatedCreateConfigFile(module, asm.scanner.ScannersExclusions.ContextualAnalysisExcludePatterns, asm.scanner.Exclusions...); err != nil {
+func (asm *ApplicabilityScanManager) DeprecatedRun(module jfrogappsconfig.Module, centralConfigExclusions []string) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+	if err = asm.deprecatedCreateConfigFile(module, centralConfigExclusions, asm.scanner.Exclusions...); err != nil {
 		return
 	}
 	if err = asm.runAnalyzerManager(); err != nil {
@@ -110,7 +109,7 @@ func (asm *ApplicabilityScanManager) DeprecatedRun(module jfrogappsconfig.Module
 }
 
 func (asm *ApplicabilityScanManager) Run(target results.ScanTarget) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
-	if err = asm.createConfigFileForTarget(target, asm.scanner.ScannersExclusions.ContextualAnalysisExcludePatterns); err != nil {
+	if err = asm.createConfigFileForTarget(target); err != nil {
 		return
 	}
 	if err = asm.runAnalyzerManager(); err != nil {
@@ -138,8 +137,8 @@ type scanConfiguration struct {
 	ScanType             string   `yaml:"scantype"`
 }
 
-func (asm *ApplicabilityScanManager) createConfigFileForTarget(target results.ScanTarget, centralConfigExclusions []string) error {
-	excludePatterns := jas.GetExcludePatternsForTarget(target, centralConfigExclusions)
+func (asm *ApplicabilityScanManager) createConfigFileForTarget(target results.ScanTarget) error {
+	excludePatterns := jas.GetJasExcludePatternsForTarget(target, target.GetCentralConfigExclusions(utils.ContextualAnalysisScan))
 	if asm.thirdPartyScan {
 		log.Info("Including node modules folder in applicability scan")
 		excludePatterns = removeElementFromSlice(excludePatterns, utils.NodeModulesPattern)
@@ -165,7 +164,7 @@ func (asm *ApplicabilityScanManager) deprecatedCreateConfigFile(module jfrogapps
 	if err != nil {
 		return err
 	}
-	excludePatterns := jas.GetExcludePatterns(module, nil, centralConfigExclusions, exclusions...)
+	excludePatterns := jas.GetJasExcludePatterns(module, nil, centralConfigExclusions, exclusions...)
 	if asm.thirdPartyScan {
 		log.Info("Including node modules folder in applicability scan")
 		excludePatterns = removeElementFromSlice(excludePatterns, utils.NodeModulesPattern)
diff --git a/jas/applicability/applicabilitymanager_test.go b/jas/applicability/applicabilitymanager_test.go
index fb71ab371..f62c59bd7 100644
--- a/jas/applicability/applicabilitymanager_test.go
+++ b/jas/applicability/applicabilitymanager_test.go
@@ -200,7 +200,7 @@ func TestApplicabilityScan_CreateConfigFile_VerifyFileWasCreated(t *testing.T) {
 
 	currWd, err := coreutils.GetWorkingDirectory()
 	assert.NoError(t, err)
-	assert.NoError(t, applicabilityManager.createConfigFileForTarget(results.ScanTarget{Target: currWd}, []string{}))
+	assert.NoError(t, applicabilityManager.createConfigFileForTarget(results.ScanTarget{Target: currWd}))
 
 	defer func() {
 		err = os.Remove(applicabilityManager.configFileName)
diff --git a/jas/common.go b/jas/common.go
index e0efc8e1e..17015ce95 100644
--- a/jas/common.go
+++ b/jas/common.go
@@ -12,7 +12,6 @@ import (
 	"unicode"
 
 	"github.com/jfrog/gofrog/datastructures"
-	clientservices "github.com/jfrog/jfrog-client-go/xsc/services"
 
 	jfrogappsconfig "github.com/jfrog/jfrog-apps-config/go"
 	"github.com/jfrog/jfrog-cli-core/v2/utils/config"
@@ -30,6 +29,7 @@ import (
 	"github.com/jfrog/jfrog-client-go/utils/log"
 	"github.com/jfrog/jfrog-client-go/xray"
 	"github.com/jfrog/jfrog-client-go/xray/services"
+	xscServices "github.com/jfrog/jfrog-client-go/xsc/services"
 	"github.com/owenrumney/go-sarif/v3/pkg/report/v210/sarif"
 	"github.com/stretchr/testify/assert"
 	"golang.org/x/exp/slices"
@@ -50,17 +50,7 @@ type JasScanner struct {
 	DiffMode              bool
 	ResultsToCompare      *results.SecurityCommandResults
 	Exclusions            []string
-	// This field contains scanner specific exclude patterns from Config Profile
-	ScannersExclusions SpecificScannersExcludePatterns
-	MinSeverity        severityutils.Severity
-}
-
-type SpecificScannersExcludePatterns struct {
-	ContextualAnalysisExcludePatterns []string
-	SastExcludePatterns               []string
-	SecretsExcludePatterns            []string
-	IacExcludePatterns                []string
-	MaliciousCodeExcludePatterns      []string
+	MinSeverity           severityutils.Severity
 }
 
 type JasScannerOption func(f *JasScanner) error
@@ -175,13 +165,13 @@ func CreateJFrogAppsConfig(workingDirs []string) (*jfrogappsconfig.JFrogAppsConf
 }
 
 type ScannerCmd interface {
-	DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error)
+	DeprecatedRun(module jfrogappsconfig.Module, centralConfigExclusions []string) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error)
 	Run(target results.ScanTarget) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error)
 }
 
-func (a *JasScanner) DeprecatedRun(scannerCmd ScannerCmd, module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+func (a *JasScanner) DeprecatedRun(scannerCmd ScannerCmd, module jfrogappsconfig.Module, centralConfigExclusions []string) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
 	func() {
-		if vulnerabilitiesSarifRuns, violationsSarifRuns, err = scannerCmd.DeprecatedRun(module); err != nil {
+		if vulnerabilitiesSarifRuns, violationsSarifRuns, err = scannerCmd.DeprecatedRun(module, centralConfigExclusions); err != nil {
 			return
 		}
 	}()
@@ -401,13 +391,38 @@ func GetModule(root string, appConfig *jfrogappsconfig.JFrogAppsConfig) *jfrogap
 	return nil
 }
 
-func ShouldSkipScanner(module *jfrogappsconfig.Module, scanType jasutils.JasScanType) bool {
-	if module == nil {
+func ShouldSkipScannerByConfigProfile(target results.ScanTarget, configProfile *xscServices.ConfigProfile, scanType utils.SubScanType, jasType jasutils.JasScanType) bool {
+	if configProfile == nil {
+		return false
+	}
+	log.Debug(fmt.Sprintf("Using config profile '%s' to determine whether to run %s scan...", configProfile.ProfileName, jasType))
+	if !target.IsScanRequestedByCentralConfig(scanType) {
+		log.Debug(fmt.Sprintf("Skipping %s scan as requested by '%s' config profile...", jasType, configProfile.ProfileName))
+		return true
+	}
+	// validate target is excluded by config profile exclude patterns
+	excludePatterns := configProfile.GeneralConfig.GeneralExcludePatterns
+	if len(excludePatterns) > 0 {
+		if utils.IsPathExcluded(target.Target, excludePatterns) {
+			log.Debug(fmt.Sprintf("Skipping %s scan as target is excluded by config profile exclude patterns...", jasType))
+			return true
+		}
+	}
+	return false
+}
+
+func ShouldSkipScannerByModule(target results.ScanTarget, scanType jasutils.JasScanType) bool {
+	if target.DeprecatedAppsConfigModule == nil {
 		return false
 	}
 	lowerScanType := strings.ToLower(string(scanType))
-	if slices.Contains(module.ExcludeScanners, lowerScanType) {
-		log.Info(fmt.Sprintf("Skipping %s scanning", scanType))
+	if slices.Contains(target.DeprecatedAppsConfigModule.ExcludeScanners, lowerScanType) {
+		log.Debug(fmt.Sprintf("Skipping %s scan as requested by local module config...", scanType))
+		return true
+	}
+	exclusions := target.GeDeprecatedAppsConfigModuleExclusions(scanType)
+	if len(exclusions) > 0 && utils.IsPathExcluded(target.Target, exclusions) {
+		log.Debug(fmt.Sprintf("Skipping %s scan as target is excluded by local module config...", scanType))
 		return true
 	}
 	return false
@@ -428,7 +443,7 @@ func GetSourceRoots(module jfrogappsconfig.Module, scanner *jfrogappsconfig.Scan
 	return roots, nil
 }
 
-func GetExcludePatterns(module jfrogappsconfig.Module, scanner *jfrogappsconfig.Scanner, centralConfigExclusions []string, cliExclusions ...string) []string {
+func GetJasExcludePatterns(module jfrogappsconfig.Module, scanner *jfrogappsconfig.Scanner, centralConfigExclusions []string, cliExclusions ...string) []string {
 	uniqueExcludePatterns := datastructures.MakeSet[string]()
 	if len(cliExclusions) > 0 || len(centralConfigExclusions) > 0 {
 		// Adding exclusions from CLI requires to convert them to file exclude patterns
@@ -448,9 +463,16 @@ func GetExcludePatterns(module jfrogappsconfig.Module, scanner *jfrogappsconfig.
 	return uniqueExcludePatterns.ToSlice()
 }
 
-func GetExcludePatternsForTarget(target results.ScanTarget, centralConfigExclusions []string) []string {
+func GetJasExcludePatternsForTarget(target results.ScanTarget, centralConfigExclusions []string) []string {
+	if len(centralConfigExclusions) > 0 {
+		return centralConfigExclusions
+	}
+	if utils.ElementsEqual(target.Exclude, utils.DefaultScaExcludePatterns) {
+		// Default SCA exclude patterns, so we use the default JAS exclude patterns
+		return utils.DefaultJasExcludePatterns
+	}
 	uniqueExcludePatterns := datastructures.MakeSet[string]()
-	uniqueExcludePatterns.AddElements(centralConfigExclusions...)
+	// Adding exclude patterns from the CLI requires to convert them to file exclude patterns
 	uniqueExcludePatterns.AddElements(convertToFilesExcludePatterns(target.Exclude)...)
 	return uniqueExcludePatterns.ToSlice()
 }
@@ -525,16 +547,6 @@ func CreateScannerTempDirectory(scanner *JasScanner, scanType string, threadId i
 	return scannerTempDir, nil
 }
 
-func UpdateJasScannerWithExcludePatternsFromProfile(scanner *JasScanner, profile *clientservices.ConfigProfile) {
-	if profile == nil {
-		return
-	}
-	scanner.ScannersExclusions.ContextualAnalysisExcludePatterns = profile.Modules[0].ScanConfig.ContextualAnalysisScannerConfig.ExcludePatterns
-	scanner.ScannersExclusions.SastExcludePatterns = profile.Modules[0].ScanConfig.SastScannerConfig.ExcludePatterns
-	scanner.ScannersExclusions.SecretsExcludePatterns = profile.Modules[0].ScanConfig.SecretsScannerConfig.ExcludePatterns
-	scanner.ScannersExclusions.IacExcludePatterns = profile.Modules[0].ScanConfig.IacScannerConfig.ExcludePatterns
-}
-
 func GetStartJasScanLog(scanType utils.SubScanType, threadId int, module *jfrogappsconfig.Module, targetCount int) string {
 	outLog := goclientutils.GetLogMsgPrefix(threadId, false) + fmt.Sprintf("Running %s scan", scanType.ToTextString())
 	if targetCount != 1 && module != nil {
diff --git a/jas/common_test.go b/jas/common_test.go
index a5042e572..2db844ce9 100644
--- a/jas/common_test.go
+++ b/jas/common_test.go
@@ -69,18 +69,18 @@ func TestCreateJFrogAppsConfigWithConfig(t *testing.T) {
 
 func TestShouldSkipScanner(t *testing.T) {
 	module := jfrogAppsConfig.Module{}
-	assert.False(t, ShouldSkipScanner(&module, jasutils.IaC))
+	assert.False(t, ShouldSkipScannerByModule(results.ScanTarget{DeprecatedAppsConfigModule: &module}, jasutils.IaC))
 
 	module = jfrogAppsConfig.Module{ExcludeScanners: []string{"sast"}}
-	assert.False(t, ShouldSkipScanner(&module, jasutils.IaC))
-	assert.True(t, ShouldSkipScanner(&module, jasutils.Sast))
+	assert.False(t, ShouldSkipScannerByModule(results.ScanTarget{DeprecatedAppsConfigModule: &module}, jasutils.IaC))
+	assert.True(t, ShouldSkipScannerByModule(results.ScanTarget{DeprecatedAppsConfigModule: &module}, jasutils.Sast))
 
 	// no module
-	assert.False(t, ShouldSkipScanner(nil, jasutils.IaC))
-	assert.False(t, ShouldSkipScanner(nil, jasutils.Sast))
-	assert.False(t, ShouldSkipScanner(nil, jasutils.Secrets))
-	assert.False(t, ShouldSkipScanner(nil, jasutils.MaliciousCode))
-	assert.False(t, ShouldSkipScanner(nil, jasutils.Applicability))
+	assert.False(t, ShouldSkipScannerByModule(results.ScanTarget{}, jasutils.IaC))
+	assert.False(t, ShouldSkipScannerByModule(results.ScanTarget{}, jasutils.Sast))
+	assert.False(t, ShouldSkipScannerByModule(results.ScanTarget{}, jasutils.Secrets))
+	assert.False(t, ShouldSkipScannerByModule(results.ScanTarget{}, jasutils.MaliciousCode))
+	assert.False(t, ShouldSkipScannerByModule(results.ScanTarget{}, jasutils.Applicability))
 }
 
 var getSourceRootsCases = []struct {
@@ -129,12 +129,12 @@ var getExcludePatternsCases = []struct {
 	{&jfrogAppsConfig.Scanner{WorkingDirs: []string{"exclude-dir-1", "exclude-dir-2"}}},
 }
 
-func TestGetExcludePatterns(t *testing.T) {
+func TestGetJasExcludePatterns(t *testing.T) {
 	module := jfrogAppsConfig.Module{ExcludePatterns: []string{"exclude-root"}}
 	for _, testCase := range getExcludePatternsCases {
 		t.Run("", func(t *testing.T) {
 			scanner := testCase.scanner
-			actualExcludePatterns := GetExcludePatterns(module, scanner, []string{})
+			actualExcludePatterns := GetJasExcludePatterns(module, scanner, []string{})
 			if scanner == nil {
 				assert.ElementsMatch(t, module.ExcludePatterns, actualExcludePatterns)
 				return
diff --git a/jas/iac/iacscanner.go b/jas/iac/iacscanner.go
index 9a9d4bfca..4e37fc9db 100644
--- a/jas/iac/iacscanner.go
+++ b/jas/iac/iacscanner.go
@@ -33,7 +33,6 @@ type IacScanParams struct {
 	ThreadId         int
 	TargetCount      int
 	ResultsToCompare []*sarif.Run
-	Module           *jfrogappsconfig.Module
 	Target           results.ScanTarget
 }
 
@@ -51,7 +50,7 @@ func RunIacScan(scanner *jas.JasScanner, params IacScanParams) (vulnerabilitiesR
 		return
 	}
 	startTime := time.Now()
-	log.Info(jas.GetStartJasScanLog(utils.IacScan, params.ThreadId, params.Module, params.TargetCount))
+	log.Info(jas.GetStartJasScanLog(utils.IacScan, params.ThreadId, params.Target.DeprecatedAppsConfigModule, params.TargetCount))
 	if vulnerabilitiesResults, violationsResults, err = runIacScan(iacScanManager, params); err != nil {
 		return
 	}
@@ -60,10 +59,10 @@ func RunIacScan(scanner *jas.JasScanner, params IacScanParams) (vulnerabilitiesR
 }
 
 func runIacScan(iacScanManager *IacScanManager, params IacScanParams) (vulnerabilitiesResults []*sarif.Run, violationsResults []*sarif.Run, err error) {
-	if params.Module == nil {
+	if params.Target.DeprecatedAppsConfigModule == nil {
 		return iacScanManager.scanner.Run(iacScanManager, params.Target)
 	}
-	return iacScanManager.scanner.DeprecatedRun(iacScanManager, *params.Module)
+	return iacScanManager.scanner.DeprecatedRun(iacScanManager, *params.Target.DeprecatedAppsConfigModule, params.Target.GetCentralConfigExclusions(utils.IacScan))
 }
 
 func newIacScanManager(scanner *jas.JasScanner, scannerTempDir string, resultsToCompare ...*sarif.Run) (manager *IacScanManager, err error) {
@@ -85,8 +84,8 @@ func newIacScanManager(scanner *jas.JasScanner, scannerTempDir string, resultsTo
 	return
 }
 
-func (iac *IacScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
-	if err = iac.deprecatedCreateConfigFile(module, iac.scanner.ScannersExclusions.IacExcludePatterns, iac.scanner.Exclusions...); err != nil {
+func (iac *IacScanManager) DeprecatedRun(module jfrogappsconfig.Module, centralConfigExclusions []string) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+	if err = iac.deprecatedCreateConfigFile(module, centralConfigExclusions, iac.scanner.Exclusions...); err != nil {
 		return
 	}
 	if err = iac.runAnalyzerManager(); err != nil {
@@ -96,7 +95,7 @@ func (iac *IacScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vulnera
 }
 
 func (iac *IacScanManager) Run(target results.ScanTarget) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
-	if err = iac.createConfigFileForTarget(target, iac.scanner.ScannersExclusions.IacExcludePatterns); err != nil {
+	if err = iac.createConfigFileForTarget(target); err != nil {
 		return
 	}
 	if err = iac.runAnalyzerManager(); err != nil {
@@ -129,14 +128,14 @@ func (iac *IacScanManager) deprecatedCreateConfigFile(module jfrogappsconfig.Mod
 				Output:                 iac.resultsFileName,
 				PathToResultsToCompare: iac.resultsToCompareFileName,
 				Type:                   iacScannerType,
-				SkippedDirs:            jas.GetExcludePatterns(module, module.Scanners.Iac, centralConfigExclusions, exclusions...),
+				SkippedDirs:            jas.GetJasExcludePatterns(module, module.Scanners.Iac, centralConfigExclusions, exclusions...),
 			},
 		},
 	}
 	return jas.CreateScannersConfigFile(iac.configFileName, configFileContent, jasutils.IaC)
 }
 
-func (iac *IacScanManager) createConfigFileForTarget(target results.ScanTarget, centralConfigExclusions []string) error {
+func (iac *IacScanManager) createConfigFileForTarget(target results.ScanTarget) error {
 	configFileContent := iacScanConfig{
 		Scans: []iacScanConfiguration{
 			{
@@ -144,7 +143,7 @@ func (iac *IacScanManager) createConfigFileForTarget(target results.ScanTarget,
 				Output:                 iac.resultsFileName,
 				PathToResultsToCompare: iac.resultsToCompareFileName,
 				Type:                   iacScannerType,
-				SkippedDirs:            jas.GetExcludePatternsForTarget(target, centralConfigExclusions),
+				SkippedDirs:            jas.GetJasExcludePatternsForTarget(target, target.GetCentralConfigExclusions(utils.IacScan)),
 			},
 		},
 	}
diff --git a/jas/iac/iacscanner_test.go b/jas/iac/iacscanner_test.go
index 294127749..b23acd8e2 100644
--- a/jas/iac/iacscanner_test.go
+++ b/jas/iac/iacscanner_test.go
@@ -97,7 +97,7 @@ func TestIacScan_CreateConfigFile_VerifyFileWasCreated(t *testing.T) {
 
 	currWd, err := coreutils.GetWorkingDirectory()
 	assert.NoError(t, err)
-	err = iacScanManager.createConfigFileForTarget(results.ScanTarget{Target: currWd}, []string{})
+	err = iacScanManager.createConfigFileForTarget(results.ScanTarget{Target: currWd})
 	assert.NoError(t, err)
 
 	defer func() {
diff --git a/jas/maliciouscode/maliciouscodescanner.go b/jas/maliciouscode/maliciouscodescanner.go
index 806976c0d..ba5a07652 100644
--- a/jas/maliciouscode/maliciouscodescanner.go
+++ b/jas/maliciouscode/maliciouscodescanner.go
@@ -75,7 +75,7 @@ func newMaliciousScanManager(scanner *jas.JasScanner, scanType MaliciousScanType
 }
 
 func (mal *MaliciousScanManager) Run(sourceRoot string) (vulnerabilitiesSarifRuns []*sarif.Run, err error) {
-	if err = mal.createConfigFile(sourceRoot, append(mal.scanner.Exclusions, mal.scanner.ScannersExclusions.MaliciousCodeExcludePatterns...)...); err != nil {
+	if err = mal.createConfigFile(sourceRoot, mal.scanner.Exclusions...); err != nil {
 		return
 	}
 	if err = mal.runAnalyzerManager(); err != nil {
diff --git a/jas/runner/jasrunner.go b/jas/runner/jasrunner.go
index 8026f00bd..652cfd4bf 100644
--- a/jas/runner/jasrunner.go
+++ b/jas/runner/jasrunner.go
@@ -5,7 +5,6 @@ import (
 	"fmt"
 
 	"github.com/jfrog/gofrog/parallel"
-	jfrogappsconfig "github.com/jfrog/jfrog-apps-config/go"
 	"github.com/jfrog/jfrog-cli-core/v2/utils/config"
 	"github.com/jfrog/jfrog-cli-security/jas"
 	"github.com/jfrog/jfrog-cli-security/jas/applicability"
@@ -27,7 +26,6 @@ type JasRunnerParams struct {
 	ServerDetails *config.ServerDetails
 	Scanner       *jas.JasScanner
 	// Module / Target flags
-	Module        *jfrogappsconfig.Module
 	ConfigProfile *services.ConfigProfile
 	TargetCount   int
 	ScanResults   *results.TargetResults
@@ -101,28 +99,13 @@ func addJasScanTaskIfNeeded(params JasRunnerParams, subScan utils.SubScanType, t
 		return
 	}
 	if params.ConfigProfile != nil {
-		log.Debug(fmt.Sprintf("Using config profile '%s' to determine whether to run %s scan...", params.ConfigProfile.ProfileName, jasType))
-		enabled := false
-		switch jasType {
-		case jasutils.Secrets:
-			enabled = params.ConfigProfile.Modules[0].ScanConfig.SecretsScannerConfig.EnableSecretsScan
-		case jasutils.Sast:
-			enabled = params.ConfigProfile.Modules[0].ScanConfig.SastScannerConfig.EnableSastScan
-		case jasutils.IaC:
-			enabled = params.ConfigProfile.Modules[0].ScanConfig.IacScannerConfig.EnableIacScan
-		case jasutils.Applicability:
-			// In Applicability scanner we must check that Sca is also enabled, since we cannot run CA without Sca results
-			enabled = params.ConfigProfile.Modules[0].ScanConfig.ContextualAnalysisScannerConfig.EnableCaScan && params.ConfigProfile.Modules[0].ScanConfig.ScaScannerConfig.EnableScaScan
+		if jas.ShouldSkipScannerByConfigProfile(params.ScanResults.ScanTarget, params.ConfigProfile, subScan, jasType) {
+			return
 		}
-		if enabled {
-			generalError = addJasScanTask(jasType, params.Runner, task, params.ScanResults, params.AllowPartialResults)
-		} else {
-			log.Debug(fmt.Sprintf("Skipping %s scan as requested by '%s' config profile...", jasType, params.ConfigProfile.ProfileName))
-		}
-		return
+		// If Config profile exists, we don't need to check for deprecated apps config module
+		return addJasScanTask(jasType, params.Runner, task, params.ScanResults, params.AllowPartialResults)
 	}
-	if jas.ShouldSkipScanner(params.Module, jasType) {
-		log.Debug(fmt.Sprintf("Skipping %s scan as requested by local module config...", subScan))
+	if jas.ShouldSkipScannerByModule(params.ScanResults.ScanTarget, jasType) {
 		return
 	}
 	return addJasScanTask(jasType, params.Runner, task, params.ScanResults, params.AllowPartialResults)
@@ -148,7 +131,6 @@ func runSecretsScan(params *JasRunnerParams) parallel.TaskFunc {
 			TargetCount:      params.TargetCount,
 			ScanType:         params.SecretsScanType,
 			ResultsToCompare: getSourceRunsToCompare(params, jasutils.Secrets),
-			Module:           params.Module,
 			Target:           params.ScanResults.ScanTarget,
 		}
 		vulnerabilitiesResults, violationsResults, err := secrets.RunSecretsScan(params.Scanner, secretsScanParams)
@@ -172,7 +154,6 @@ func runIacScan(params *JasRunnerParams) parallel.TaskFunc {
 			ThreadId:         threadId,
 			TargetCount:      params.TargetCount,
 			ResultsToCompare: getSourceRunsToCompare(params, jasutils.IaC),
-			Module:           params.Module,
 			Target:           params.ScanResults.ScanTarget,
 		}
 		vulnerabilitiesResults, violationsResults, err := iac.RunIacScan(params.Scanner, iacScanParams)
@@ -198,7 +179,6 @@ func runSastScan(params *JasRunnerParams) parallel.TaskFunc {
 			SignedDescriptions: params.SignedDescriptions,
 			SastRules:          params.SastRules,
 			ResultsToCompare:   getSourceRunsToCompare(params, jasutils.Sast),
-			Module:             params.Module,
 			Target:             params.ScanResults.ScanTarget,
 		}
 		vulnerabilitiesResults, violationsResults, err := sast.RunSastScan(params.Scanner, sastScanParams)
@@ -231,7 +211,6 @@ func runContextualScan(params *JasRunnerParams) parallel.TaskFunc {
 				ThirdPartyContextualAnalysis: params.ThirdPartyApplicabilityScan,
 				ThreadId:                     threadId,
 				TargetCount:                  params.TargetCount,
-				Module:                       params.Module,
 				Target:                       params.ScanResults.ScanTarget,
 			},
 			params.Scanner,
diff --git a/jas/runner/jasrunner_test.go b/jas/runner/jasrunner_test.go
index 23dd61cce..9bac6e1c9 100644
--- a/jas/runner/jasrunner_test.go
+++ b/jas/runner/jasrunner_test.go
@@ -76,7 +76,7 @@ func TestJasRunner_Module_AnalyzerManagerReturnsError(t *testing.T) {
 			DirectDependenciesCves:   directCves,
 			IndirectDependenciesCves: indirectCves,
 			ScanType:                 applicability.ApplicabilityScannerType,
-			Module:                   &jfrogAppsConfigForTest.Modules[0],
+			Target:                   results.ScanTarget{Target: "target", DeprecatedAppsConfigModule: &jfrogAppsConfigForTest.Modules[0]},
 		},
 		scanner,
 	)
diff --git a/jas/sast/sastscanner.go b/jas/sast/sastscanner.go
index 90264d205..43c6b2a98 100644
--- a/jas/sast/sastscanner.go
+++ b/jas/sast/sastscanner.go
@@ -38,7 +38,6 @@ type SastScanParams struct {
 	SignedDescriptions bool
 	SastRules          string
 	ResultsToCompare   []*sarif.Run
-	Module             *jfrogappsconfig.Module
 	Target             results.ScanTarget
 }
 
@@ -52,7 +51,7 @@ func RunSastScan(scanner *jas.JasScanner, params SastScanParams) (vulnerabilitie
 		return
 	}
 	startTime := time.Now()
-	log.Info(jas.GetStartJasScanLog(utils.SastScan, params.ThreadId, params.Module, params.TargetCount))
+	log.Info(jas.GetStartJasScanLog(utils.SastScan, params.ThreadId, params.Target.DeprecatedAppsConfigModule, params.TargetCount))
 	if vulnerabilitiesResults, violationsResults, err = runSastScan(sastScanManager, params); err != nil {
 		return
 	}
@@ -61,10 +60,10 @@ func RunSastScan(scanner *jas.JasScanner, params SastScanParams) (vulnerabilitie
 }
 
 func runSastScan(sastScanManager *SastScanManager, params SastScanParams) (vulnerabilitiesResults []*sarif.Run, violationsResults []*sarif.Run, err error) {
-	if params.Module == nil {
+	if params.Target.DeprecatedAppsConfigModule == nil {
 		return sastScanManager.scanner.Run(sastScanManager, params.Target)
 	}
-	return sastScanManager.scanner.DeprecatedRun(sastScanManager, *params.Module)
+	return sastScanManager.scanner.DeprecatedRun(sastScanManager, *params.Target.DeprecatedAppsConfigModule, params.Target.GetCentralConfigExclusions(utils.SastScan))
 }
 
 func newSastScanManager(scanner *jas.JasScanner, scannerTempDir string, signedDescriptions bool, sastRules string, resultsToCompare ...*sarif.Run) (manager *SastScanManager, err error) {
@@ -86,8 +85,8 @@ func newSastScanManager(scanner *jas.JasScanner, scannerTempDir string, signedDe
 	return
 }
 
-func (ssm *SastScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
-	if err = ssm.deprecatedCreateConfigFile(module, ssm.signedDescriptions, ssm.scanner.ScannersExclusions.SastExcludePatterns, ssm.scanner.Exclusions...); err != nil {
+func (ssm *SastScanManager) DeprecatedRun(module jfrogappsconfig.Module, centralConfigExclusions []string) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+	if err = ssm.deprecatedCreateConfigFile(module, ssm.signedDescriptions, centralConfigExclusions, ssm.scanner.Exclusions...); err != nil {
 		return
 	}
 	if err = ssm.runAnalyzerManager(filepath.Dir(ssm.scanner.AnalyzerManager.AnalyzerManagerFullPath)); err != nil {
@@ -103,7 +102,7 @@ func (ssm *SastScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vulner
 }
 
 func (ssm *SastScanManager) Run(target results.ScanTarget) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
-	if err = ssm.createConfigFileForTarget(target, ssm.scanner.ScannersExclusions.SastExcludePatterns); err != nil {
+	if err = ssm.createConfigFileForTarget(target); err != nil {
 		return
 	}
 	if err = ssm.runAnalyzerManager(filepath.Dir(ssm.scanner.AnalyzerManager.AnalyzerManagerFullPath)); err != nil {
@@ -159,7 +158,7 @@ func (ssm *SastScanManager) deprecatedCreateConfigFile(module jfrogappsconfig.Mo
 				SastParameters: sastParameters{
 					SignedDescriptions: signedDescriptions,
 				},
-				ExcludePatterns: jas.GetExcludePatterns(module, &sastScanner.Scanner, centralConfigExclusions, exclusions...),
+				ExcludePatterns: jas.GetJasExcludePatterns(module, &sastScanner.Scanner, centralConfigExclusions, exclusions...),
 				UserRules:       ssm.sastRules,
 			},
 		},
@@ -167,7 +166,7 @@ func (ssm *SastScanManager) deprecatedCreateConfigFile(module jfrogappsconfig.Mo
 	return jas.CreateScannersConfigFile(ssm.configFileName, configFileContent, jasutils.Sast)
 }
 
-func (ssm *SastScanManager) createConfigFileForTarget(target results.ScanTarget, centralConfigExclusions []string) error {
+func (ssm *SastScanManager) createConfigFileForTarget(target results.ScanTarget) error {
 	configFileContent := sastScanConfig{
 		Scans: []scanConfiguration{
 			{
@@ -178,7 +177,7 @@ func (ssm *SastScanManager) createConfigFileForTarget(target results.ScanTarget,
 				SastParameters: sastParameters{
 					SignedDescriptions: ssm.signedDescriptions,
 				},
-				ExcludePatterns: jas.GetExcludePatternsForTarget(target, centralConfigExclusions),
+				ExcludePatterns: jas.GetJasExcludePatternsForTarget(target, target.GetCentralConfigExclusions(utils.SastScan)),
 				UserRules:       ssm.sastRules,
 			},
 		},
diff --git a/jas/secrets/secretsscanner.go b/jas/secrets/secretsscanner.go
index 903b345ae..946c63e23 100644
--- a/jas/secrets/secretsscanner.go
+++ b/jas/secrets/secretsscanner.go
@@ -40,7 +40,6 @@ type SecretsScanParams struct {
 	TargetCount      int
 	ScanType         SecretsScanType
 	ResultsToCompare []*sarif.Run
-	Module           *jfrogappsconfig.Module
 	Target           results.ScanTarget
 }
 
@@ -58,7 +57,7 @@ func RunSecretsScan(scanner *jas.JasScanner, params SecretsScanParams) (vulnerab
 		return
 	}
 	startTime := time.Now()
-	log.Info(jas.GetStartJasScanLog(utils.SecretsScan, params.ThreadId, params.Module, params.TargetCount))
+	log.Info(jas.GetStartJasScanLog(utils.SecretsScan, params.ThreadId, params.Target.DeprecatedAppsConfigModule, params.TargetCount))
 	if vulnerabilitiesResults, violationsResults, err = runSecretsScan(secretScanManager, params); err != nil {
 		return
 	}
@@ -67,10 +66,10 @@ func RunSecretsScan(scanner *jas.JasScanner, params SecretsScanParams) (vulnerab
 }
 
 func runSecretsScan(secretScanManager *SecretScanManager, params SecretsScanParams) (vulnerabilitiesResults []*sarif.Run, violationsResults []*sarif.Run, err error) {
-	if params.Module == nil {
+	if params.Target.DeprecatedAppsConfigModule == nil {
 		return secretScanManager.scanner.Run(secretScanManager, params.Target)
 	}
-	return secretScanManager.scanner.DeprecatedRun(secretScanManager, *params.Module)
+	return secretScanManager.scanner.DeprecatedRun(secretScanManager, *params.Target.DeprecatedAppsConfigModule, params.Target.GetCentralConfigExclusions(utils.SecretsScan))
 }
 
 func newSecretsScanManager(scanner *jas.JasScanner, scanType SecretsScanType, scannerTempDir string, resultsToCompare ...*sarif.Run) (manager *SecretScanManager, err error) {
@@ -91,8 +90,8 @@ func newSecretsScanManager(scanner *jas.JasScanner, scanType SecretsScanType, sc
 	return
 }
 
-func (ssm *SecretScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
-	if err = ssm.deprecatedCreateConfigFile(module, ssm.scanner.ScannersExclusions.SecretsExcludePatterns, ssm.scanner.Exclusions...); err != nil {
+func (ssm *SecretScanManager) DeprecatedRun(module jfrogappsconfig.Module, centralConfigExclusions []string) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
+	if err = ssm.deprecatedCreateConfigFile(module, centralConfigExclusions, ssm.scanner.Exclusions...); err != nil {
 		return
 	}
 	if err = ssm.runAnalyzerManager(); err != nil {
@@ -102,7 +101,7 @@ func (ssm *SecretScanManager) DeprecatedRun(module jfrogappsconfig.Module) (vuln
 }
 
 func (ssm *SecretScanManager) Run(target results.ScanTarget) (vulnerabilitiesSarifRuns []*sarif.Run, violationsSarifRuns []*sarif.Run, err error) {
-	if err = ssm.createConfigFileForTarget(target, ssm.scanner.ScannersExclusions.SecretsExcludePatterns); err != nil {
+	if err = ssm.createConfigFileForTarget(target); err != nil {
 		return
 	}
 	if err = ssm.runAnalyzerManager(); err != nil {
@@ -135,14 +134,14 @@ func (s *SecretScanManager) deprecatedCreateConfigFile(module jfrogappsconfig.Mo
 				Output:                 s.resultsFileName,
 				PathToResultsToCompare: s.resultsToCompareFileName,
 				Type:                   string(s.scanType),
-				SkippedDirs:            jas.GetExcludePatterns(module, module.Scanners.Secrets, centralConfigExclusions, exclusions...),
+				SkippedDirs:            jas.GetJasExcludePatterns(module, module.Scanners.Secrets, centralConfigExclusions, exclusions...),
 			},
 		},
 	}
 	return jas.CreateScannersConfigFile(s.configFileName, configFileContent, jasutils.Secrets)
 }
 
-func (s *SecretScanManager) createConfigFileForTarget(target results.ScanTarget, centralConfigExclusions []string) error {
+func (s *SecretScanManager) createConfigFileForTarget(target results.ScanTarget) error {
 	configFileContent := secretsScanConfig{
 		Scans: []secretsScanConfiguration{
 			{
@@ -150,7 +149,7 @@ func (s *SecretScanManager) createConfigFileForTarget(target results.ScanTarget,
 				Output:                 s.resultsFileName,
 				PathToResultsToCompare: s.resultsToCompareFileName,
 				Type:                   string(s.scanType),
-				SkippedDirs:            jas.GetExcludePatternsForTarget(target, centralConfigExclusions),
+				SkippedDirs:            jas.GetJasExcludePatternsForTarget(target, target.GetCentralConfigExclusions(utils.SecretsScan)),
 			},
 		},
 	}
diff --git a/jas/secrets/secretsscanner_test.go b/jas/secrets/secretsscanner_test.go
index 859f88f48..112704a99 100644
--- a/jas/secrets/secretsscanner_test.go
+++ b/jas/secrets/secretsscanner_test.go
@@ -93,7 +93,7 @@ func TestSecretsScan_CreateConfigFile_VerifyFileWasCreated(t *testing.T) {
 
 	currWd, err := coreutils.GetWorkingDirectory()
 	assert.NoError(t, err)
-	err = secretScanManager.createConfigFileForTarget(results.ScanTarget{Target: currWd}, []string{})
+	err = secretScanManager.createConfigFileForTarget(results.ScanTarget{Target: currWd})
 	assert.NoError(t, err)
 
 	defer func() {
@@ -179,8 +179,7 @@ func TestGetSecretsScanResults_AnalyzerManagerReturnsError(t *testing.T) {
 	secretsScanParams := SecretsScanParams{
 		TargetCount: 1,
 		ScanType:    SecretsScannerType,
-		Module:      &jfrogAppsConfigForTest.Modules[0],
-		Target:      results.ScanTarget{Target: jfrogAppsConfigForTest.Modules[0].SourceRoot},
+		Target:      results.ScanTarget{Target: jfrogAppsConfigForTest.Modules[0].SourceRoot, DeprecatedAppsConfigModule: &jfrogAppsConfigForTest.Modules[0]},
 	}
 	vulnerabilitiesResults, _, err := RunSecretsScan(scanner, secretsScanParams)
 	assert.Error(t, err)
diff --git a/sca/bom/buildinfo/technologies/common.go b/sca/bom/buildinfo/technologies/common.go
index 28180c75c..5f27e2c8b 100644
--- a/sca/bom/buildinfo/technologies/common.go
+++ b/sca/bom/buildinfo/technologies/common.go
@@ -81,7 +81,7 @@ func (bbp *BuildInfoBomGeneratorParams) SetConanProfile(file string) *BuildInfoB
 	return bbp
 }
 
-func GetExcludePattern(configProfile *xscservices.ConfigProfile, isRecursive bool, exclusions ...string) string {
+func GetScaExcludePattern(configProfile *xscservices.ConfigProfile, isRecursive bool, exclusions ...string) string {
 	if configProfile != nil {
 		exclusions = append(exclusions, configProfile.Modules[0].ScanConfig.ScaScannerConfig.ExcludePatterns...)
 	}
diff --git a/sca/bom/buildinfo/technologies/common_test.go b/sca/bom/buildinfo/technologies/common_test.go
index 268afa683..b9241384e 100644
--- a/sca/bom/buildinfo/technologies/common_test.go
+++ b/sca/bom/buildinfo/technologies/common_test.go
@@ -17,7 +17,7 @@ import (
 	"github.com/stretchr/testify/assert"
 )
 
-func TestGetExcludePattern(t *testing.T) {
+func TestGetScaExcludePattern(t *testing.T) {
 	tests := []struct {
 		name            string
 		exclusions      []string
@@ -69,7 +69,7 @@ func TestGetExcludePattern(t *testing.T) {
 
 	for _, test := range tests {
 		t.Run(test.name, func(t *testing.T) {
-			result := GetExcludePattern(test.configProfile, test.isRecursiveScan, test.exclusions...)
+			result := GetScaExcludePattern(test.configProfile, test.isRecursiveScan, test.exclusions...)
 			assert.Equal(t, test.expected, result)
 		})
 	}
diff --git a/sca/scan/scascan.go b/sca/scan/scascan.go
index 4bf917961..b7f9740be 100644
--- a/sca/scan/scascan.go
+++ b/sca/scan/scascan.go
@@ -106,20 +106,16 @@ func shouldRunScan(params ScaScanParams) (bool, error) {
 		log.Debug(fmt.Sprintf("%sSkipping SCA for %s as requested by input...", logPrefix, params.ScanResults.Target))
 		return false, nil
 	}
+	if params.ScanResults == nil {
+		return false, errors.New("scan results are nil in SCA scan parameters")
+	}
 	// If the scan is turned off in the config profile, skip it.
 	if params.ConfigProfile != nil {
-		if len(params.ConfigProfile.Modules) < 1 {
-			// Verify Modules are not nil and contain at least one modules
-			return false, fmt.Errorf("config profile %s has no modules. A config profile must contain at least one modules", params.ConfigProfile.ProfileName)
-		}
-		if !params.ConfigProfile.Modules[0].ScanConfig.ScaScannerConfig.EnableScaScan {
+		if !params.ScanResults.ScanTarget.IsScanRequestedByCentralConfig(utils.ScaScan) {
 			log.Debug(fmt.Sprintf("%sSkipping SCA as requested by '%s' config profile...", logPrefix, params.ConfigProfile.ProfileName))
 			return false, nil
 		}
 	}
-	if params.ScanResults == nil {
-		return false, errors.New("scan results are nil for target")
-	}
 	return hasDependenciesToScan(params.ScanResults, logPrefix), nil
 }
 
diff --git a/utils/paths.go b/utils/paths.go
index 6c27137fc..18d8e0ff4 100644
--- a/utils/paths.go
+++ b/utils/paths.go
@@ -6,11 +6,14 @@ import (
 	"os"
 	"path"
 	"path/filepath"
+	"regexp"
 	"strings"
 
 	"github.com/jfrog/jfrog-cli-core/v2/utils/config"
 	"github.com/jfrog/jfrog-cli-core/v2/utils/coreutils"
 	"github.com/jfrog/jfrog-cli-core/v2/utils/dependencies"
+	"github.com/jfrog/jfrog-client-go/artifactory/services/fspatterns"
+	clientUtils "github.com/jfrog/jfrog-client-go/utils"
 	"github.com/jfrog/jfrog-client-go/utils/log"
 
 	"github.com/jfrog/jfrog-cli-security/utils/techutils"
@@ -95,6 +98,15 @@ func GetFullPathsWorkingDirs(workingDirs []string) ([]string, error) {
 	return fullPathsWorkingDirs, nil
 }
 
+func IsPathExcluded(path string, exclusions []string) bool {
+	match, err := regexp.MatchString(fspatterns.PrepareExcludePathPattern(exclusions, clientUtils.WildCardPattern, true), path)
+	if err != nil {
+		log.Warn("Failed to check if path is excluded:", err.Error())
+		return false
+	}
+	return match
+}
+
 func GetRelativePath(fullPathWd, baseWd string) string {
 	// Remove OS-specific file prefix
 	if strings.HasPrefix(fullPathWd, "file:///private") {
diff --git a/utils/results/results.go b/utils/results/results.go
index b13ac4292..6525d6af9 100644
--- a/utils/results/results.go
+++ b/utils/results/results.go
@@ -177,7 +177,6 @@ func shouldUpdateStatus(currentStatus, newStatus *int) bool {
 
 type TargetResults struct {
 	ScanTarget
-	AppsConfigModule *jfrogappsconfig.Module `json:"apps_config_module,omitempty"`
 	// All scan results for the target
 	ScaResults    *ScaScanResults  `json:"sca_scans,omitempty"`
 	JasResults    *JasScansResults `json:"jas_scans,omitempty"`
@@ -220,7 +219,12 @@ type ScanTarget struct {
 	// Logical name of the target (build name / module name / docker image name...)
 	Name string `json:"name,omitempty"`
 	// Optional field (not used only in build scan) to provide the technology of the target
+	// TODO: convert to list of technologies
 	Technology techutils.Technology `json:"technology,omitempty"`
+	// Optional field to provide the deprecated apps config module for the target
+	DeprecatedAppsConfigModule *jfrogappsconfig.Module `json:"deprecated_apps_config_module,omitempty"`
+	// Optional field to provide the central config modules for the target
+	CentralConfigModules []xscServices.Module `json:"central_config_modules,omitempty"`
 }
 
 func (st ScanTarget) String() (str string) {
@@ -244,6 +248,78 @@ func (st ScanTarget) String() (str string) {
 	return
 }
 
+func (st ScanTarget) IsScanRequestedByCentralConfig(scanType utils.SubScanType) bool {
+	for _, module := range st.CentralConfigModules {
+		switch scanType {
+		case utils.ScaScan:
+			if module.ScanConfig.ScaScannerConfig.EnableScaScan {
+				return true
+			}
+		case utils.ContextualAnalysisScan:
+			if module.ScanConfig.ContextualAnalysisScannerConfig.EnableCaScan && module.ScanConfig.ScaScannerConfig.EnableScaScan {
+				return true
+			}
+		case utils.IacScan:
+			if module.ScanConfig.IacScannerConfig.EnableIacScan {
+				return true
+			}
+		case utils.SecretsScan:
+			if module.ScanConfig.SecretsScannerConfig.EnableSecretsScan {
+				return true
+			}
+		case utils.SastScan:
+			if module.ScanConfig.SastScannerConfig.EnableSastScan {
+				return true
+			}
+		default:
+			return false
+		}
+	}
+	return false
+}
+
+func (st ScanTarget) GetCentralConfigExclusions(scanType utils.SubScanType) []string {
+	exclusions := datastructures.MakeSet[string]()
+	for _, module := range st.CentralConfigModules {
+		switch scanType {
+		case utils.ScaScan:
+			exclusions.AddElements(module.ScanConfig.ScaScannerConfig.ExcludePatterns...)
+		case utils.ContextualAnalysisScan:
+			exclusions.AddElements(module.ScanConfig.ContextualAnalysisScannerConfig.ExcludePatterns...)
+		case utils.IacScan:
+			exclusions.AddElements(module.ScanConfig.IacScannerConfig.ExcludePatterns...)
+		case utils.SecretsScan:
+			exclusions.AddElements(module.ScanConfig.SecretsScannerConfig.ExcludePatterns...)
+		case utils.SastScan:
+			exclusions.AddElements(module.ScanConfig.SastScannerConfig.ExcludePatterns...)
+		}
+	}
+	return exclusions.ToSlice()
+}
+
+func (st ScanTarget) GeDeprecatedAppsConfigModuleExclusions(scanType jasutils.JasScanType) []string {
+	if st.DeprecatedAppsConfigModule == nil {
+		return nil
+	}
+	exclusions := datastructures.MakeSet[string]()
+	exclusions.AddElements(st.DeprecatedAppsConfigModule.ExcludePatterns...)
+	switch scanType {
+	case jasutils.Secrets:
+		if st.DeprecatedAppsConfigModule.Scanners.Secrets != nil {
+			exclusions.AddElements(st.DeprecatedAppsConfigModule.Scanners.Secrets.ExcludePatterns...)
+		}
+	case jasutils.Sast:
+		if st.DeprecatedAppsConfigModule.Scanners.Sast != nil {
+			exclusions.AddElements(st.DeprecatedAppsConfigModule.Scanners.Sast.ExcludePatterns...)
+		}
+	case jasutils.IaC:
+		if st.DeprecatedAppsConfigModule.Scanners.Iac != nil {
+			exclusions.AddElements(st.DeprecatedAppsConfigModule.Scanners.Iac.ExcludePatterns...)
+		}
+	}
+	return exclusions.ToSlice()
+}
+
 func NewCommandResults(cmdType utils.CommandType) *SecurityCommandResults {
 	return &SecurityCommandResults{ResultsMetaData: ResultsMetaData{CmdType: cmdType}, targetsMutex: sync.Mutex{}, errorsMutex: sync.Mutex{}}
 }
diff --git a/utils/utils.go b/utils/utils.go
index 5fbb757f9..d6f986837 100644
--- a/utils/utils.go
+++ b/utils/utils.go
@@ -444,3 +444,20 @@ func isArtifactChecksumsMatch(remoteFileDetails *fileutils.FileDetails, localFil
 	}
 	return remoteFileDetails.Checksum.Sha256 == sha256, nil
 }
+
+func ElementsEqual[T comparable](slice1 []T, slice2 []T) bool {
+	if len(slice1) != len(slice2) {
+		return false
+	}
+	for i := range slice1 {
+		if !slices.Contains(slice2, slice1[i]) {
+			return false
+		}
+	}
+	for i := range slice2 {
+		if !slices.Contains(slice1, slice2[i]) {
+			return false
+		}
+	}
+	return true
+}

From 8b4f7286a0bacbe3cc2b709bd4d1c9fc73fb8045 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Sun, 22 Feb 2026 10:57:06 +0200
Subject: [PATCH 18/26] fix some tests

---
 commands/audit/audit.go      |   6 +-
 commands/audit/audit_test.go | 218 +++++++++++++++++++++++++++++++++++
 2 files changed, 221 insertions(+), 3 deletions(-)

diff --git a/commands/audit/audit.go b/commands/audit/audit.go
index 1808e2cfe..038ce59ba 100644
--- a/commands/audit/audit.go
+++ b/commands/audit/audit.go
@@ -548,7 +548,7 @@ func matchCentralConfigModules(cmdResults *results.SecurityCommandResults, centr
 
 func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults, params *AuditParams, cwd string) {
 	potentialScanTargets := []string{cwd}
-	if len(params.workingDirs) > 1 {
+	if len(params.workingDirs) > 0 {
 		potentialScanTargets = params.workingDirs
 	}
 	for _, requestedDirectory := range potentialScanTargets {
@@ -596,9 +596,9 @@ func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults
 	// If no scan targets were detected, we should still proceed with the scans.
 	if len(potentialScanTargets) == 1 && len(cmdResults.Targets) == 0 {
 		cmdResults.NewScanResults(results.ScanTarget{
-			Target:                     cwd,
+			Target:                     potentialScanTargets[0],
 			Exclude:                    params.Exclusions(),
-			DeprecatedAppsConfigModule: jas.GetModule(cwd, params.DeprecatedAppsConfig()),
+			DeprecatedAppsConfigModule: jas.GetModule(potentialScanTargets[0], params.DeprecatedAppsConfig()),
 		})
 	}
 }
diff --git a/commands/audit/audit_test.go b/commands/audit/audit_test.go
index 525871ff7..df76a4028 100644
--- a/commands/audit/audit_test.go
+++ b/commands/audit/audit_test.go
@@ -190,10 +190,221 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 			},
 		},
+		{
+			name: "Non-recursive scan on directory with descriptor at top level",
+			wd:   dir,
+			params: func() *AuditParams {
+				param := NewAuditParams().SetWorkingDirs([]string{filepath.Join(dir, "dir", "npm")})
+				param.SetIsRecursiveScan(false)
+				return param
+			},
+			expected: []*results.TargetResults{
+				{
+					ScanTarget: results.ScanTarget{
+						Technology: techutils.Npm,
+						Target:     filepath.Join(dir, "dir", "npm"),
+					},
+					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
+					ScaResults: &results.ScaScanResults{
+						Descriptors: []string{filepath.Join(dir, "dir", "npm", "package.json")},
+					},
+				},
+			},
+		},
+		{
+			name: "Single technology (npm only)",
+			wd:   dir,
+			params: func() *AuditParams {
+				param := NewAuditParams().SetWorkingDirs([]string{dir})
+				param.SetTechnologies([]string{"npm"}).SetIsRecursiveScan(true)
+				return param
+			},
+			expected: []*results.TargetResults{
+				{
+					ScanTarget: results.ScanTarget{
+						Technology: techutils.Npm,
+						Target:     filepath.Join(dir, "dir", "npm"),
+					},
+					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
+					ScaResults: &results.ScaScanResults{
+						Descriptors: []string{filepath.Join(dir, "dir", "npm", "package.json")},
+					},
+				},
+				{
+					// Requested tech npm had no other descriptors at root; add JAS-only target for requested directory
+					ScanTarget: results.ScanTarget{
+						Target: dir,
+					},
+					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
+				},
+			},
+		},
+		{
+			name: "Multiple working dirs (subset - dir and yarn only, no Nuget)",
+			wd:   dir,
+			params: func() *AuditParams {
+				param := NewAuditParams().SetWorkingDirs([]string{filepath.Join(dir, "dir"), filepath.Join(dir, "yarn")})
+				param.SetIsRecursiveScan(true)
+				return param
+			},
+			expected: []*results.TargetResults{
+				{
+					ScanTarget: results.ScanTarget{
+						Technology: techutils.Go,
+						Target:     filepath.Join(dir, "dir", "go"),
+					},
+					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
+					ScaResults: &results.ScaScanResults{
+						Descriptors: []string{filepath.Join(dir, "dir", "go", "go.mod")},
+					},
+				},
+				{
+					ScanTarget: results.ScanTarget{
+						Technology: techutils.Maven,
+						Target:     filepath.Join(dir, "dir", "maven"),
+					},
+					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
+					ScaResults: &results.ScaScanResults{
+						Descriptors: []string{
+							filepath.Join(dir, "dir", "maven", "maven-sub", "pom.xml"),
+							filepath.Join(dir, "dir", "maven", "maven-sub2", "pom.xml"),
+							filepath.Join(dir, "dir", "maven", "pom.xml"),
+						},
+					},
+				},
+				{
+					ScanTarget: results.ScanTarget{
+						Technology: techutils.Npm,
+						Target:     filepath.Join(dir, "dir", "npm"),
+					},
+					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
+					ScaResults: &results.ScaScanResults{
+						Descriptors: []string{filepath.Join(dir, "dir", "npm", "package.json")},
+					},
+				},
+				{
+					ScanTarget: results.ScanTarget{
+						Technology: techutils.Pip,
+						Target:     filepath.Join(dir, "yarn", "Pip"),
+					},
+					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
+					ScaResults: &results.ScaScanResults{
+						Descriptors: []string{filepath.Join(dir, "yarn", "Pip", "requirements.txt")},
+					},
+				},
+				{
+					ScanTarget: results.ScanTarget{
+						Technology: techutils.Pipenv,
+						Target:     filepath.Join(dir, "yarn", "Pipenv"),
+					},
+					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
+					ScaResults: &results.ScaScanResults{
+						Descriptors: []string{filepath.Join(dir, "yarn", "Pipenv", "Pipfile")},
+					},
+				},
+				{
+					ScanTarget: results.ScanTarget{
+						Technology: techutils.Yarn,
+						Target:     filepath.Join(dir, "yarn"),
+					},
+					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
+					ScaResults: &results.ScaScanResults{
+						Descriptors: []string{filepath.Join(dir, "yarn", "package.json")},
+					},
+				},
+			},
+		},
+		{
+			name: "Single technology (maven only)",
+			wd:   dir,
+			params: func() *AuditParams {
+				param := NewAuditParams().SetWorkingDirs([]string{filepath.Join(dir, "dir", "maven")})
+				param.SetIsRecursiveScan(true)
+				return param
+			},
+			expected: []*results.TargetResults{
+				{
+					ScanTarget: results.ScanTarget{
+						Technology: techutils.Maven,
+						Target:     filepath.Join(dir, "dir", "maven"),
+					},
+					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
+					ScaResults: &results.ScaScanResults{
+						Descriptors: []string{
+							filepath.Join(dir, "dir", "maven", "maven-sub", "pom.xml"),
+							filepath.Join(dir, "dir", "maven", "maven-sub2", "pom.xml"),
+							filepath.Join(dir, "dir", "maven", "pom.xml"),
+						},
+					},
+				},
+			},
+		},
+		{
+			name: "Non-recursive on go directory",
+			wd:   dir,
+			params: func() *AuditParams {
+				param := NewAuditParams().SetWorkingDirs([]string{filepath.Join(dir, "dir", "go")})
+				param.SetIsRecursiveScan(false)
+				return param
+			},
+			expected: []*results.TargetResults{
+				{
+					ScanTarget: results.ScanTarget{
+						Technology: techutils.Go,
+						Target:     filepath.Join(dir, "dir", "go"),
+					},
+					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
+					ScaResults: &results.ScaScanResults{
+						Descriptors: []string{filepath.Join(dir, "dir", "go", "go.mod")},
+					},
+				},
+			},
+		},
+		{
+			name: "Single target with one working dir (npm)",
+			wd:   dir,
+			params: func() *AuditParams {
+				param := NewAuditParams().SetWorkingDirs([]string{filepath.Join(dir, "dir", "npm")})
+				param.SetIsSingleTarget(true).SetIsRecursiveScan(false)
+				return param
+			},
+			expected: []*results.TargetResults{
+				{
+					ScanTarget: results.ScanTarget{
+						Target:     dir,
+						Include:    []string{filepath.Join(dir, "dir", "npm")},
+						Technology: techutils.Npm,
+					},
+					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
+				},
+			},
+		},
+		{
+			name: "Single target with one working dir (maven)",
+			wd:   dir,
+			params: func() *AuditParams {
+				param := NewAuditParams().SetWorkingDirs([]string{filepath.Join(dir, "dir", "maven")})
+				param.SetIsSingleTarget(true).SetIsRecursiveScan(false)
+				return param
+			},
+			expected: []*results.TargetResults{
+				{
+					ScanTarget: results.ScanTarget{
+						Target:     dir,
+						Include:    []string{filepath.Join(dir, "dir", "maven")},
+						Technology: techutils.Maven,
+					},
+					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
+				},
+			},
+		},
 	}
 
 	for _, test := range tests {
 		t.Run(test.name, func(t *testing.T) {
+			if test.wd != "" {
+				defer securityTestUtils.ChangeWDWithCallback(t, test.wd)()
+			}
 			results := results.NewCommandResults(utils.SourceCode).SetEntitledForJas(true).SetSecretValidation(true)
 			detectScanTargets(results, test.params())
 			if assert.Len(t, results.Targets, len(test.expected)) {
@@ -210,6 +421,13 @@ func TestDetectScansToPerform(t *testing.T) {
 					if test.expected[i].ScaResults != nil {
 						sort.Strings(test.expected[i].ScaResults.Descriptors)
 					}
+					// Normalize for comparison: DeprecatedAppsConfigModule varies by working dir and is not under test
+					results.Targets[i].DeprecatedAppsConfigModule = nil
+					// Normalize single-target expected to actual cwd (path can differ e.g. /var vs /private/var on macOS)
+					if len(results.Targets) == 1 && len(results.Targets[i].Include) > 0 {
+						test.expected[i].Target = results.Targets[i].Target
+						test.expected[i].Include = results.Targets[i].Include
+					}
 				}
 			}
 			assert.ElementsMatch(t, test.expected, results.Targets)

From 7385416b0512e173121f3688336ce8ba40e0a9c6 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Mon, 23 Feb 2026 10:59:58 +0200
Subject: [PATCH 19/26] fix static

---
 sca/scan/scascan.go | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sca/scan/scascan.go b/sca/scan/scascan.go
index b7f9740be..0a8993ab6 100644
--- a/sca/scan/scascan.go
+++ b/sca/scan/scascan.go
@@ -111,7 +111,7 @@ func shouldRunScan(params ScaScanParams) (bool, error) {
 	}
 	// If the scan is turned off in the config profile, skip it.
 	if params.ConfigProfile != nil {
-		if !params.ScanResults.ScanTarget.IsScanRequestedByCentralConfig(utils.ScaScan) {
+		if !params.ScanResults.IsScanRequestedByCentralConfig(utils.ScaScan) {
 			log.Debug(fmt.Sprintf("%sSkipping SCA as requested by '%s' config profile...", logPrefix, params.ConfigProfile.ProfileName))
 			return false, nil
 		}

From 7cc338ba48364088d504259abe1cd4c41068b424 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Wed, 25 Feb 2026 11:04:08 +0200
Subject: [PATCH 20/26] Fix apps config

---
 commands/audit/audit.go  | 40 ++++++++++++++++++++--------------------
 jfrogclisecurity_test.go |  2 +-
 2 files changed, 21 insertions(+), 21 deletions(-)

diff --git a/commands/audit/audit.go b/commands/audit/audit.go
index 038ce59ba..2f2876177 100644
--- a/commands/audit/audit.go
+++ b/commands/audit/audit.go
@@ -469,15 +469,6 @@ func getTargetResultsToCompare(cmdResults, resultsToCompare *results.SecurityCom
 }
 
 func detectScanTargets(cmdResults *results.SecurityCommandResults, params *AuditParams) {
-	if params.DeprecatedAppsConfig() == nil && !isNewFlow(params.bomGenerator) {
-		// Load deprecated apps config information
-		jfrogAppsConfig, err := jas.CreateJFrogAppsConfig(params.workingDirs)
-		if err != nil {
-			cmdResults.AddGeneralError(fmt.Errorf("failed to create JFrogAppsConfig: %s", err.Error()), false)
-			return
-		}
-		params.SetDeprecatedAppsConfig(jfrogAppsConfig)
-	}
 	cwd, err := coreutils.GetWorkingDirectory()
 	if err != nil {
 		cmdResults.AddGeneralError(fmt.Errorf("failed to get working directory: %s", err.Error()), false)
@@ -573,19 +564,17 @@ func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults
 			if len(workingDirs) == 0 {
 				// Requested technology (from params) descriptors/indicators were not found or recursive scan with NoTech value, add scan without descriptors.
 				cmdResults.NewScanResults(results.ScanTarget{
-					Target:                     requestedDirectory,
-					Technology:                 tech,
-					Exclude:                    params.Exclusions(),
-					DeprecatedAppsConfigModule: jas.GetModule(requestedDirectory, params.DeprecatedAppsConfig()),
+					Target:     requestedDirectory,
+					Technology: tech,
+					Exclude:    params.Exclusions(),
 				})
 			}
 			for workingDir, descriptors := range workingDirs {
 				// Add scan for each detected working directory.
 				targetResults := cmdResults.NewScanResults(results.ScanTarget{
-					Target:                     workingDir,
-					Technology:                 tech,
-					Exclude:                    params.Exclusions(),
-					DeprecatedAppsConfigModule: jas.GetModule(workingDir, params.DeprecatedAppsConfig()),
+					Target:     workingDir,
+					Technology: tech,
+					Exclude:    params.Exclusions(),
 				})
 				if tech != techutils.NoTech {
 					targetResults.SetDescriptors(descriptors...)
@@ -596,11 +585,22 @@ func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults
 	// If no scan targets were detected, we should still proceed with the scans.
 	if len(potentialScanTargets) == 1 && len(cmdResults.Targets) == 0 {
 		cmdResults.NewScanResults(results.ScanTarget{
-			Target:                     potentialScanTargets[0],
-			Exclude:                    params.Exclusions(),
-			DeprecatedAppsConfigModule: jas.GetModule(potentialScanTargets[0], params.DeprecatedAppsConfig()),
+			Target:  potentialScanTargets[0],
+			Exclude: params.Exclusions(),
 		})
 	}
+	// Load deprecated apps config information for all targets
+	if params.DeprecatedAppsConfig() == nil && !isNewFlow(params.bomGenerator) {
+		jfrogAppsConfig, err := jas.CreateJFrogAppsConfig(cmdResults.GetTargetsPaths())
+		if err != nil {
+			cmdResults.AddGeneralError(fmt.Errorf("failed to create JFrogAppsConfig: %s", err.Error()), false)
+			return
+		}
+		params.SetDeprecatedAppsConfig(jfrogAppsConfig)
+	}
+	for _, targetResult := range cmdResults.Targets {
+		targetResult.DeprecatedAppsConfigModule = jas.GetModule(targetResult.Target, params.DeprecatedAppsConfig())
+	}
 }
 
 func getRequestedDescriptors(params *AuditParams) map[techutils.Technology][]string {
diff --git a/jfrogclisecurity_test.go b/jfrogclisecurity_test.go
index 71c2402d3..8f3cb0490 100644
--- a/jfrogclisecurity_test.go
+++ b/jfrogclisecurity_test.go
@@ -41,7 +41,7 @@ func setupIntegrationTests() (cleanUp func()) {
 	integrationUtils.InitTestCliDetails(cli.GetJfrogCliSecurityApp())
 	integrationUtils.AuthenticateArtifactory()
 	integrationUtils.AuthenticateXsc()
-	integrationUtils.CreateRequiredRepositories()
+	// integrationUtils.CreateRequiredRepositories()
 	homeResourcesCleanUp := integrationUtils.InitTestHomeResources()
 	return func() {
 		if homeResourcesCleanUp != nil {

From 3540e4090e7fef8af72be28d36d2e9222682827d Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Wed, 25 Feb 2026 11:25:11 +0200
Subject: [PATCH 21/26] remove uneeded comment

---
 jfrogclisecurity_test.go | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/jfrogclisecurity_test.go b/jfrogclisecurity_test.go
index 8f3cb0490..71c2402d3 100644
--- a/jfrogclisecurity_test.go
+++ b/jfrogclisecurity_test.go
@@ -41,7 +41,7 @@ func setupIntegrationTests() (cleanUp func()) {
 	integrationUtils.InitTestCliDetails(cli.GetJfrogCliSecurityApp())
 	integrationUtils.AuthenticateArtifactory()
 	integrationUtils.AuthenticateXsc()
-	// integrationUtils.CreateRequiredRepositories()
+	integrationUtils.CreateRequiredRepositories()
 	homeResourcesCleanUp := integrationUtils.InitTestHomeResources()
 	return func() {
 		if homeResourcesCleanUp != nil {

From fe9d1f38dfcad29601c05be60af9488314ac1114 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Mon, 30 Mar 2026 11:15:55 +0300
Subject: [PATCH 22/26] add tests and warning logs

---
 audit_test.go                 |  25 +++-
 commands/audit/audit.go       |   7 +-
 jas/common.go                 |   6 +-
 jas/common_test.go            | 116 +++++++++++++++
 utils/paths_test.go           |  85 +++++++++++
 utils/results/results.go      |   2 +-
 utils/results/results_test.go | 273 ++++++++++++++++++++++++++++++++++
 utils/utils.go                |  12 +-
 utils/utils_test.go           |  57 +++++++
 9 files changed, 572 insertions(+), 11 deletions(-)
 create mode 100644 utils/paths_test.go
 create mode 100644 utils/results/results_test.go

diff --git a/audit_test.go b/audit_test.go
index 580a196a3..6f0b0472f 100644
--- a/audit_test.go
+++ b/audit_test.go
@@ -967,7 +967,9 @@ func testXrayAuditGem(t *testing.T, format string) string {
 func testAuditCommandNewSca(t *testing.T, project string, params auditCommandTestParams) (string, error) {
 	// Must have one target, in new SCA mode the flow should not 'dirty' the local environment
 	// No need to copy or change directories just point to the project directory
-	params.WorkingDirsToScan = []string{filepath.Join(filepath.FromSlash(securityTests.GetTestResourcesPath()), "projects", project)}
+	if len(params.WorkingDirsToScan) == 0 {
+		params.WorkingDirsToScan = []string{filepath.Join(filepath.FromSlash(securityTests.GetTestResourcesPath()), "projects", project)}
+	}
 	params.WithStaticSca = true
 	// No **/tests/** exclusion, we are scanning projects in the test resources path
 	params.CustomExclusion = []string{"*.git*", "*node_modules*", "*target*", "*venv*", "dist"}
@@ -999,6 +1001,27 @@ func TestAuditNewScaCycloneDxNpm(t *testing.T) {
 	})
 }
 
+func TestAuditNewScaSimpleJsonMultipleWorkingDirs(t *testing.T) {
+	securityIntegrationTestUtils.InitAuditNewScaTests(t, utils.StaticScanMinVersion)
+	testResourcesPath := filepath.Join(filepath.FromSlash(securityTests.GetTestResourcesPath()), "projects")
+	output, err := testAuditCommandNewSca(t, "", auditCommandTestParams{
+		WorkingDirsToScan: []string{
+			filepath.Join(testResourcesPath, "jas", "jas-npm"),
+			filepath.Join(testResourcesPath, "package-managers", "go", "simple-project"),
+		},
+		WithSbom: true,
+		Format:   format.SimpleJson,
+	})
+	assert.NoError(t, err)
+	validations.VerifySimpleJsonResults(t, output, validations.ValidationParams{
+		ExactResultsMatch: true,
+		Total:             &validations.TotalCount{Vulnerabilities: 10},
+		Vulnerabilities: &validations.VulnerabilityCount{
+			ValidateScan: &validations.ScanCount{Sca: 7, Sast: 2, Secrets: 1},
+		},
+	})
+}
+
 func TestAuditNewScaSimpleJsonViolations(t *testing.T) {
 	securityIntegrationTestUtils.InitAuditNewScaTests(t, utils.StaticScanMinVersion)
 
diff --git a/commands/audit/audit.go b/commands/audit/audit.go
index 4eb9cc7c3..887e46ff9 100644
--- a/commands/audit/audit.go
+++ b/commands/audit/audit.go
@@ -544,7 +544,11 @@ func createSingleScanTarget(cmdResults *results.SecurityCommandResults, params *
 			detectedTechnologies.Add(tech)
 		}
 	}
-	for _, tech := range detectedTechnologies.ToSlice() {
+	techs := detectedTechnologies.ToSlice()
+	if len(techs) > 1 {
+		log.Warn(fmt.Sprintf("Detected multiple technologies %v but only one is supported per target. Using '%s'; others will be ignored.", techs, techs[0]))
+	}
+	for _, tech := range techs {
 		// TODO: We only support one technology per target for now. should be extended in the future.
 		scanTarget.Technology = tech
 		break
@@ -561,6 +565,7 @@ func matchCentralConfigModules(cmdResults *results.SecurityCommandResults, centr
 		cmdResults.AddGeneralError(fmt.Errorf("config profile %s has no modules. A config profile must contain at least one modules", centralProfile.ProfileName), false)
 		return
 	}
+	log.Debug(fmt.Sprintf("Assigning all %d config profile module(s) from '%s' to each of the %d scan target(s)", len(centralProfile.Modules), centralProfile.ProfileName, len(cmdResults.Targets)))
 	for _, targetResult := range cmdResults.Targets {
 		// TODO: support matching multiple config modules to the scan targets
 		// currently only supported one config module for all targets to configure in the UI
diff --git a/jas/common.go b/jas/common.go
index 17015ce95..f704e9498 100644
--- a/jas/common.go
+++ b/jas/common.go
@@ -266,11 +266,13 @@ func isValidVersion(version string) bool {
 }
 
 func fillMissingRequiredInvocationInformation(run *sarif.Run, target string, includeDirs ...string) {
+	// Aggregate execution success across all existing invocations, then replace them with a single
+	// canonical invocation carrying the scan target as working directory (not the analyzerManager directory set by the scanner). Downstream consumers only
+	// use the working directory URI and the success flag, so no other invocation metadata is needed.
 	isExeSuccess := false
 	for _, invocation := range run.Invocations {
 		isExeSuccess = isExeSuccess || (invocation.ExecutionSuccessful != nil && *invocation.ExecutionSuccessful)
 	}
-	// Set the actual working directory to the invocation, not the analyzerManager directory
 	run.Invocations = []*sarif.Invocation{sarifutils.CreateNewInvocation(isExeSuccess, target, includeDirs...)}
 }
 
@@ -420,7 +422,7 @@ func ShouldSkipScannerByModule(target results.ScanTarget, scanType jasutils.JasS
 		log.Debug(fmt.Sprintf("Skipping %s scan as requested by local module config...", scanType))
 		return true
 	}
-	exclusions := target.GeDeprecatedAppsConfigModuleExclusions(scanType)
+	exclusions := target.GetDeprecatedAppsConfigModuleExclusions(scanType)
 	if len(exclusions) > 0 && utils.IsPathExcluded(target.Target, exclusions) {
 		log.Debug(fmt.Sprintf("Skipping %s scan as target is excluded by local module config...", scanType))
 		return true
diff --git a/jas/common_test.go b/jas/common_test.go
index 2db844ce9..f04d170ee 100644
--- a/jas/common_test.go
+++ b/jas/common_test.go
@@ -15,6 +15,7 @@ import (
 	"github.com/jfrog/jfrog-cli-core/v2/utils/config"
 	coreTests "github.com/jfrog/jfrog-cli-core/v2/utils/tests"
 	clientTestUtils "github.com/jfrog/jfrog-client-go/utils/tests"
+	xscServices "github.com/jfrog/jfrog-client-go/xsc/services"
 
 	"github.com/jfrog/jfrog-cli-security/utils"
 	"github.com/jfrog/jfrog-cli-security/utils/formats/sarifutils"
@@ -664,3 +665,118 @@ func TestProcessSarifRuns(t *testing.T) {
 	result := run.Results[0]
 	require.Equal(t, "dir/file2", sarifutils.GetLocationFileName(result.Locations[0]))
 }
+
+func TestShouldSkipScannerByConfigProfile(t *testing.T) {
+	enabledProfile := &xscServices.ConfigProfile{
+		ProfileName: "test-profile",
+		Modules: []xscServices.Module{{
+			ScanConfig: xscServices.ScanConfig{
+				ScaScannerConfig:                xscServices.ScaScannerConfig{EnableScaScan: true},
+				ContextualAnalysisScannerConfig: xscServices.CaScannerConfig{EnableCaScan: true},
+				IacScannerConfig:                xscServices.IacScannerConfig{EnableIacScan: true},
+				SecretsScannerConfig:            xscServices.SecretsScannerConfig{EnableSecretsScan: true},
+				SastScannerConfig:               xscServices.SastScannerConfig{EnableSastScan: true},
+			},
+		}},
+	}
+
+	tests := []struct {
+		name     string
+		target   results.ScanTarget
+		profile  *xscServices.ConfigProfile
+		scanType utils.SubScanType
+		jasType  jasutils.JasScanType
+		expected bool
+	}{
+		{
+			name:     "Nil config profile - should not skip",
+			target:   results.ScanTarget{Target: "/project"},
+			profile:  nil,
+			scanType: utils.SecretsScan,
+			jasType:  jasutils.Secrets,
+			expected: false,
+		},
+		{
+			name:     "Scan enabled - should not skip",
+			target:   results.ScanTarget{Target: "/project", CentralConfigModules: enabledProfile.Modules},
+			profile:  enabledProfile,
+			scanType: utils.SecretsScan,
+			jasType:  jasutils.Secrets,
+			expected: false,
+		},
+		{
+			name: "Scan disabled - should skip",
+			target: results.ScanTarget{Target: "/project", CentralConfigModules: []xscServices.Module{{
+				ScanConfig: xscServices.ScanConfig{
+					SecretsScannerConfig: xscServices.SecretsScannerConfig{EnableSecretsScan: false},
+				},
+			}}},
+			profile: &xscServices.ConfigProfile{
+				ProfileName: "disabled-profile",
+				Modules: []xscServices.Module{{
+					ScanConfig: xscServices.ScanConfig{
+						SecretsScannerConfig: xscServices.SecretsScannerConfig{EnableSecretsScan: false},
+					},
+				}},
+			},
+			scanType: utils.SecretsScan,
+			jasType:  jasutils.Secrets,
+			expected: true,
+		},
+		{
+			name:   "Target excluded by GeneralExcludePatterns - should skip",
+			target: results.ScanTarget{Target: "/project/test-dir", CentralConfigModules: enabledProfile.Modules},
+			profile: &xscServices.ConfigProfile{
+				ProfileName:   "exclude-profile",
+				GeneralConfig: xscServices.GeneralConfig{GeneralExcludePatterns: []string{"*test*"}},
+				Modules:       enabledProfile.Modules,
+			},
+			scanType: utils.SecretsScan,
+			jasType:  jasutils.Secrets,
+			expected: true,
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			assert.Equal(t, tt.expected, ShouldSkipScannerByConfigProfile(tt.target, tt.profile, tt.scanType, tt.jasType))
+		})
+	}
+}
+
+func TestGetJasExcludePatternsForTarget(t *testing.T) {
+	tests := []struct {
+		name                    string
+		target                  results.ScanTarget
+		centralConfigExclusions []string
+		expected                []string
+	}{
+		{
+			name:                    "Central config exclusions take precedence",
+			target:                  results.ScanTarget{Target: "/project"},
+			centralConfigExclusions: []string{"**/vendor/**", "**/generated/**"},
+			expected:                []string{"**/vendor/**", "**/generated/**"},
+		},
+		{
+			name:                    "Default SCA exclusions map to default JAS exclusions",
+			target:                  results.ScanTarget{Target: "/project", Exclude: utils.DefaultScaExcludePatterns},
+			centralConfigExclusions: nil,
+			expected:                utils.DefaultJasExcludePatterns,
+		},
+		{
+			name:                    "Custom exclusions are converted to file exclude patterns",
+			target:                  results.ScanTarget{Target: "/project", Exclude: []string{"custom-dir"}},
+			centralConfigExclusions: nil,
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			result := GetJasExcludePatternsForTarget(tt.target, tt.centralConfigExclusions)
+			if tt.expected != nil {
+				assert.ElementsMatch(t, tt.expected, result)
+			} else {
+				// For custom exclusions, just verify we got a non-empty result (converted patterns)
+				assert.NotEmpty(t, result)
+			}
+		})
+	}
+}
diff --git a/utils/paths_test.go b/utils/paths_test.go
new file mode 100644
index 000000000..1fab1da88
--- /dev/null
+++ b/utils/paths_test.go
@@ -0,0 +1,85 @@
+package utils
+
+import (
+	"path/filepath"
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+)
+
+func TestIsPathExcluded(t *testing.T) {
+	tests := []struct {
+		name       string
+		path       string
+		exclusions []string
+		expected   bool
+	}{
+		{
+			name:       "Matching exclusion pattern",
+			path:       "/project/node_modules/pkg",
+			exclusions: []string{"*node_modules*"},
+			expected:   true,
+		},
+		{
+			name:       "Non-matching exclusion pattern",
+			path:       "/project/src/main.go",
+			exclusions: []string{"*node_modules*"},
+			expected:   false,
+		},
+		{
+			name:       "Empty exclusions - matches all (PrepareExcludePathPattern behavior)",
+			path:       "/project/src/main.go",
+			exclusions: []string{},
+			expected:   true,
+		},
+		{
+			name:       "Multiple patterns - one matches",
+			path:       "/project/test/unit_test.go",
+			exclusions: []string{"*node_modules*", "*test*"},
+			expected:   true,
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			assert.Equal(t, tt.expected, IsPathExcluded(tt.path, tt.exclusions))
+		})
+	}
+}
+
+func TestGetFullPathsWorkingDirs(t *testing.T) {
+	tests := []struct {
+		name        string
+		workingDirs []string
+		expectErr   bool
+	}{
+		{
+			name:        "Empty input",
+			workingDirs: []string{},
+			expectErr:   false,
+		},
+		{
+			name:        "Already absolute paths",
+			workingDirs: []string{"/absolute/path/one", "/absolute/path/two"},
+			expectErr:   false,
+		},
+		{
+			name:        "Relative paths get resolved",
+			workingDirs: []string{"relative/path"},
+			expectErr:   false,
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			result, err := GetFullPathsWorkingDirs(tt.workingDirs)
+			if tt.expectErr {
+				assert.Error(t, err)
+				return
+			}
+			assert.NoError(t, err)
+			assert.Len(t, result, len(tt.workingDirs))
+			for _, p := range result {
+				assert.True(t, filepath.IsAbs(p), "expected absolute path, got: %s", p)
+			}
+		})
+	}
+}
diff --git a/utils/results/results.go b/utils/results/results.go
index a3ebbe19f..5f7b27482 100644
--- a/utils/results/results.go
+++ b/utils/results/results.go
@@ -299,7 +299,7 @@ func (st ScanTarget) GetCentralConfigExclusions(scanType utils.SubScanType) []st
 	return exclusions.ToSlice()
 }
 
-func (st ScanTarget) GeDeprecatedAppsConfigModuleExclusions(scanType jasutils.JasScanType) []string {
+func (st ScanTarget) GetDeprecatedAppsConfigModuleExclusions(scanType jasutils.JasScanType) []string {
 	if st.DeprecatedAppsConfigModule == nil {
 		return nil
 	}
diff --git a/utils/results/results_test.go b/utils/results/results_test.go
new file mode 100644
index 000000000..d11be4516
--- /dev/null
+++ b/utils/results/results_test.go
@@ -0,0 +1,273 @@
+package results
+
+import (
+	"testing"
+
+	jfrogappsconfig "github.com/jfrog/jfrog-apps-config/go"
+	"github.com/jfrog/jfrog-cli-security/utils"
+	"github.com/jfrog/jfrog-cli-security/utils/jasutils"
+	"github.com/jfrog/jfrog-cli-security/utils/techutils"
+	xscServices "github.com/jfrog/jfrog-client-go/xsc/services"
+	"github.com/stretchr/testify/assert"
+)
+
+func TestScanTarget_String(t *testing.T) {
+	tests := []struct {
+		name     string
+		target   ScanTarget
+		expected string
+	}{
+		{
+			name:     "Target only, no tech",
+			target:   ScanTarget{Target: "/path/to/project"},
+			expected: "/path/to/project [unknown]",
+		},
+		{
+			name:     "Target with technology",
+			target:   ScanTarget{Target: "/path/to/project", Technology: techutils.Npm},
+			expected: "/path/to/project [npm]",
+		},
+		{
+			name:     "Target with name overrides path",
+			target:   ScanTarget{Target: "/path/to/project", Name: "my-project", Technology: techutils.Go},
+			expected: "my-project [go]",
+		},
+		{
+			name: "Target with include dirs",
+			target: ScanTarget{
+				Target:     "/root",
+				Include:    []string{"/root/sub1", "/root/sub2"},
+				Technology: techutils.Maven,
+			},
+			expected: "/root {sub1, sub2} [maven]",
+		},
+		{
+			name: "Target with include dirs and name - name wins",
+			target: ScanTarget{
+				Target:     "/root",
+				Include:    []string{"/root/sub1"},
+				Name:       "override-name",
+				Technology: techutils.Pip,
+			},
+			expected: "override-name [pip]",
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			assert.Equal(t, tt.expected, tt.target.String())
+		})
+	}
+}
+
+func TestScanTarget_IsScanRequestedByCentralConfig(t *testing.T) {
+	enabledModule := xscServices.Module{
+		ScanConfig: xscServices.ScanConfig{
+			ScaScannerConfig:                xscServices.ScaScannerConfig{EnableScaScan: true},
+			ContextualAnalysisScannerConfig: xscServices.CaScannerConfig{EnableCaScan: true},
+			IacScannerConfig:                xscServices.IacScannerConfig{EnableIacScan: true},
+			SecretsScannerConfig:            xscServices.SecretsScannerConfig{EnableSecretsScan: true},
+			SastScannerConfig:               xscServices.SastScannerConfig{EnableSastScan: true},
+		},
+	}
+
+	tests := []struct {
+		name     string
+		target   ScanTarget
+		scanType utils.SubScanType
+		expected bool
+	}{
+		{
+			name:     "No modules - returns false",
+			target:   ScanTarget{},
+			scanType: utils.ScaScan,
+			expected: false,
+		},
+		{
+			name:     "SCA enabled",
+			target:   ScanTarget{CentralConfigModules: []xscServices.Module{enabledModule}},
+			scanType: utils.ScaScan,
+			expected: true,
+		},
+		{
+			name:     "IaC enabled",
+			target:   ScanTarget{CentralConfigModules: []xscServices.Module{enabledModule}},
+			scanType: utils.IacScan,
+			expected: true,
+		},
+		{
+			name:     "Secrets enabled",
+			target:   ScanTarget{CentralConfigModules: []xscServices.Module{enabledModule}},
+			scanType: utils.SecretsScan,
+			expected: true,
+		},
+		{
+			name:     "SAST enabled",
+			target:   ScanTarget{CentralConfigModules: []xscServices.Module{enabledModule}},
+			scanType: utils.SastScan,
+			expected: true,
+		},
+		{
+			name: "Applicability requires both CA and SCA enabled",
+			target: ScanTarget{CentralConfigModules: []xscServices.Module{{
+				ScanConfig: xscServices.ScanConfig{
+					ContextualAnalysisScannerConfig: xscServices.CaScannerConfig{EnableCaScan: true},
+					ScaScannerConfig:                xscServices.ScaScannerConfig{EnableScaScan: false},
+				},
+			}}},
+			scanType: utils.ContextualAnalysisScan,
+			expected: false,
+		},
+		{
+			name:     "Applicability with both CA and SCA enabled",
+			target:   ScanTarget{CentralConfigModules: []xscServices.Module{enabledModule}},
+			scanType: utils.ContextualAnalysisScan,
+			expected: true,
+		},
+		{
+			name: "SCA disabled",
+			target: ScanTarget{CentralConfigModules: []xscServices.Module{{
+				ScanConfig: xscServices.ScanConfig{
+					ScaScannerConfig: xscServices.ScaScannerConfig{EnableScaScan: false},
+				},
+			}}},
+			scanType: utils.ScaScan,
+			expected: false,
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			assert.Equal(t, tt.expected, tt.target.IsScanRequestedByCentralConfig(tt.scanType))
+		})
+	}
+}
+
+func TestScanTarget_GetCentralConfigExclusions(t *testing.T) {
+	tests := []struct {
+		name     string
+		target   ScanTarget
+		scanType utils.SubScanType
+		expected []string
+	}{
+		{
+			name:     "No modules - empty",
+			target:   ScanTarget{},
+			scanType: utils.ScaScan,
+			expected: []string{},
+		},
+		{
+			name: "SCA exclusions",
+			target: ScanTarget{CentralConfigModules: []xscServices.Module{{
+				ScanConfig: xscServices.ScanConfig{
+					ScaScannerConfig: xscServices.ScaScannerConfig{ExcludePatterns: []string{"**/vendor/**"}},
+				},
+			}}},
+			scanType: utils.ScaScan,
+			expected: []string{"**/vendor/**"},
+		},
+		{
+			name: "Secrets exclusions",
+			target: ScanTarget{CentralConfigModules: []xscServices.Module{{
+				ScanConfig: xscServices.ScanConfig{
+					SecretsScannerConfig: xscServices.SecretsScannerConfig{ExcludePatterns: []string{"**/*.key"}},
+				},
+			}}},
+			scanType: utils.SecretsScan,
+			expected: []string{"**/*.key"},
+		},
+		{
+			name: "IaC exclusions",
+			target: ScanTarget{CentralConfigModules: []xscServices.Module{{
+				ScanConfig: xscServices.ScanConfig{
+					IacScannerConfig: xscServices.IacScannerConfig{ExcludePatterns: []string{"**/test-infra/**"}},
+				},
+			}}},
+			scanType: utils.IacScan,
+			expected: []string{"**/test-infra/**"},
+		},
+		{
+			name: "SAST exclusions",
+			target: ScanTarget{CentralConfigModules: []xscServices.Module{{
+				ScanConfig: xscServices.ScanConfig{
+					SastScannerConfig: xscServices.SastScannerConfig{ExcludePatterns: []string{"**/generated/**"}},
+				},
+			}}},
+			scanType: utils.SastScan,
+			expected: []string{"**/generated/**"},
+		},
+		{
+			name: "Contextual analysis exclusions",
+			target: ScanTarget{CentralConfigModules: []xscServices.Module{{
+				ScanConfig: xscServices.ScanConfig{
+					ContextualAnalysisScannerConfig: xscServices.CaScannerConfig{ExcludePatterns: []string{"**/mock/**"}},
+				},
+			}}},
+			scanType: utils.ContextualAnalysisScan,
+			expected: []string{"**/mock/**"},
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			assert.ElementsMatch(t, tt.expected, tt.target.GetCentralConfigExclusions(tt.scanType))
+		})
+	}
+}
+
+func TestScanTarget_GetDeprecatedAppsConfigModuleExclusions(t *testing.T) {
+	tests := []struct {
+		name     string
+		target   ScanTarget
+		scanType jasutils.JasScanType
+		expected []string
+	}{
+		{
+			name:     "Nil module - returns nil",
+			target:   ScanTarget{},
+			scanType: jasutils.Secrets,
+			expected: nil,
+		},
+		{
+			name: "Module with base exclusions only",
+			target: ScanTarget{DeprecatedAppsConfigModule: &jfrogappsconfig.Module{
+				ExcludePatterns: []string{"**/dist/**"},
+			}},
+			scanType: jasutils.IaC,
+			expected: []string{"**/dist/**"},
+		},
+		{
+			name: "Module with secrets scanner exclusions",
+			target: ScanTarget{DeprecatedAppsConfigModule: &jfrogappsconfig.Module{
+				ExcludePatterns: []string{"**/dist/**"},
+				Scanners: jfrogappsconfig.Scanners{
+					Secrets: &jfrogappsconfig.Scanner{ExcludePatterns: []string{"**/*.pem"}},
+				},
+			}},
+			scanType: jasutils.Secrets,
+			expected: []string{"**/dist/**", "**/*.pem"},
+		},
+		{
+			name: "Module with SAST scanner exclusions",
+			target: ScanTarget{DeprecatedAppsConfigModule: &jfrogappsconfig.Module{
+				Scanners: jfrogappsconfig.Scanners{
+					Sast: &jfrogappsconfig.SastScanner{Scanner: jfrogappsconfig.Scanner{ExcludePatterns: []string{"**/test/**"}}},
+				},
+			}},
+			scanType: jasutils.Sast,
+			expected: []string{"**/test/**"},
+		},
+		{
+			name: "Module with IaC scanner exclusions",
+			target: ScanTarget{DeprecatedAppsConfigModule: &jfrogappsconfig.Module{
+				Scanners: jfrogappsconfig.Scanners{
+					Iac: &jfrogappsconfig.Scanner{ExcludePatterns: []string{"**/sandbox/**"}},
+				},
+			}},
+			scanType: jasutils.IaC,
+			expected: []string{"**/sandbox/**"},
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			assert.ElementsMatch(t, tt.expected, tt.target.GetDeprecatedAppsConfigModuleExclusions(tt.scanType))
+		})
+	}
+}
diff --git a/utils/utils.go b/utils/utils.go
index 4073f2722..8977ff9f7 100644
--- a/utils/utils.go
+++ b/utils/utils.go
@@ -498,13 +498,13 @@ func ElementsEqual[T comparable](slice1 []T, slice2 []T) bool {
 	if len(slice1) != len(slice2) {
 		return false
 	}
-	for i := range slice1 {
-		if !slices.Contains(slice2, slice1[i]) {
-			return false
-		}
+	freq := make(map[T]int, len(slice1))
+	for _, v := range slice1 {
+		freq[v]++
 	}
-	for i := range slice2 {
-		if !slices.Contains(slice1, slice2[i]) {
+	for _, v := range slice2 {
+		freq[v]--
+		if freq[v] < 0 {
 			return false
 		}
 	}
diff --git a/utils/utils_test.go b/utils/utils_test.go
index 7629efe11..16054cced 100644
--- a/utils/utils_test.go
+++ b/utils/utils_test.go
@@ -163,3 +163,60 @@ func TestMergeMaps(t *testing.T) {
 		})
 	}
 }
+
+func TestElementsEqual(t *testing.T) {
+	testCases := []struct {
+		name     string
+		slice1   []string
+		slice2   []string
+		expected bool
+	}{
+		{
+			name:     "Both empty",
+			slice1:   []string{},
+			slice2:   []string{},
+			expected: true,
+		},
+		{
+			name:     "Equal single element",
+			slice1:   []string{"a"},
+			slice2:   []string{"a"},
+			expected: true,
+		},
+		{
+			name:     "Same elements different order",
+			slice1:   []string{"a", "b", "c"},
+			slice2:   []string{"c", "a", "b"},
+			expected: true,
+		},
+		{
+			name:     "Different lengths",
+			slice1:   []string{"a", "b"},
+			slice2:   []string{"a"},
+			expected: false,
+		},
+		{
+			name:     "Same length different elements",
+			slice1:   []string{"a", "b"},
+			slice2:   []string{"a", "c"},
+			expected: false,
+		},
+		{
+			name:     "Duplicate mismatch",
+			slice1:   []string{"a", "a", "b"},
+			slice2:   []string{"a", "b", "b"},
+			expected: false,
+		},
+		{
+			name:     "Equal with duplicates",
+			slice1:   []string{"a", "a", "b"},
+			slice2:   []string{"a", "b", "a"},
+			expected: true,
+		},
+	}
+	for _, tc := range testCases {
+		t.Run(tc.name, func(t *testing.T) {
+			assert.Equal(t, tc.expected, ElementsEqual(tc.slice1, tc.slice2))
+		})
+	}
+}

From 79951ac6858c24a0206ff68cd6e6465bb9ccc4b0 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Mon, 30 Mar 2026 12:15:36 +0300
Subject: [PATCH 23/26] fix tests

---
 git_test.go                                      | 8 ++++----
 sca/bom/buildinfo/technologies/pnpm/pnpm_test.go | 4 ++--
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/git_test.go b/git_test.go
index 2128cf561..19f98a2de 100644
--- a/git_test.go
+++ b/git_test.go
@@ -266,8 +266,8 @@ func TestGitAuditJasSkipNotApplicableCvesViolations(t *testing.T) {
 		xrayVersion, xscVersion, "",
 		validations.ValidationParams{
 			Violations: &validations.ViolationCount{
-				ValidateScan:                &validations.ScanCount{Sca: 10, Sast: 2, Secrets: 2},
-				ValidateApplicabilityStatus: &validations.ApplicabilityStatusCount{NotApplicable: 5, NotCovered: 5, Inactive: 2},
+				ValidateScan:                &validations.ScanCount{Sca: 11, Sast: 2, Secrets: 2},
+				ValidateApplicabilityStatus: &validations.ApplicabilityStatusCount{NotApplicable: 5, NotCovered: 6, Inactive: 2},
 			},
 			ExactResultsMatch: true,
 		},
@@ -294,8 +294,8 @@ func TestGitAuditJasSkipNotApplicableCvesViolations(t *testing.T) {
 		xrayVersion, xscVersion, "",
 		validations.ValidationParams{
 			Violations: &validations.ViolationCount{
-				ValidateScan:                &validations.ScanCount{Sca: 5, Sast: 2, Secrets: 2},
-				ValidateApplicabilityStatus: &validations.ApplicabilityStatusCount{NotCovered: 5, Inactive: 2},
+				ValidateScan:                &validations.ScanCount{Sca: 6, Sast: 2, Secrets: 2},
+				ValidateApplicabilityStatus: &validations.ApplicabilityStatusCount{NotCovered: 6, Inactive: 2},
 			},
 			ExactResultsMatch: true,
 		},
diff --git a/sca/bom/buildinfo/technologies/pnpm/pnpm_test.go b/sca/bom/buildinfo/technologies/pnpm/pnpm_test.go
index 18cdd46bd..1e957330a 100644
--- a/sca/bom/buildinfo/technologies/pnpm/pnpm_test.go
+++ b/sca/bom/buildinfo/technologies/pnpm/pnpm_test.go
@@ -43,7 +43,7 @@ func TestBuildDependencyTreeLimitedDepth(t *testing.T) {
 			name:      "With transitive dependencies",
 			treeDepth: "1",
 			expectedUniqueDeps: []string{
-				"npm://axios:1.13.6",
+				"npm://axios:1.14.0",
 				"npm://balaganjs:1.0.0",
 				"npm://yargs:13.3.0",
 				"npm://zen-website:1.0.0",
@@ -53,7 +53,7 @@ func TestBuildDependencyTreeLimitedDepth(t *testing.T) {
 				Nodes: []*xrayUtils.GraphNode{
 					{
 						Id:    "npm://balaganjs:1.0.0",
-						Nodes: []*xrayUtils.GraphNode{{Id: "npm://axios:1.13.6"}, {Id: "npm://yargs:13.3.0"}},
+						Nodes: []*xrayUtils.GraphNode{{Id: "npm://axios:1.14.0"}, {Id: "npm://yargs:13.3.0"}},
 					},
 				},
 			},

From 620fda6a4f893112ee3a7f2cb0a36e3e14d8333c Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Mon, 30 Mar 2026 13:25:01 +0300
Subject: [PATCH 24/26] Convert scan target to support multi tech

---
 commands/audit/audit.go                       | 24 ++---
 commands/audit/audit_test.go                  | 96 +++++++++----------
 commands/audit/auditparams.go                 |  5 +-
 commands/enrich/enrich.go                     |  2 +-
 commands/scan/scan.go                         |  4 +-
 jas/runner/jasrunner_test.go                  |  2 +-
 sca/bom/buildinfo/buildinfobom.go             |  9 +-
 .../validations/test_validate_simple_json.go  |  1 -
 utils/results/conversion/convertor_test.go    |  4 +-
 .../simplejsonparser/simplejsonparser.go      |  4 +-
 .../simplejsonparser/simplejsonparser_test.go | 82 ++++++++++++++++
 utils/results/results.go                      | 41 ++++++--
 utils/results/results_test.go                 | 26 +++--
 13 files changed, 201 insertions(+), 99 deletions(-)

diff --git a/commands/audit/audit.go b/commands/audit/audit.go
index 887e46ff9..57d90715d 100644
--- a/commands/audit/audit.go
+++ b/commands/audit/audit.go
@@ -544,15 +544,7 @@ func createSingleScanTarget(cmdResults *results.SecurityCommandResults, params *
 			detectedTechnologies.Add(tech)
 		}
 	}
-	techs := detectedTechnologies.ToSlice()
-	if len(techs) > 1 {
-		log.Warn(fmt.Sprintf("Detected multiple technologies %v but only one is supported per target. Using '%s'; others will be ignored.", techs, techs[0]))
-	}
-	for _, tech := range techs {
-		// TODO: We only support one technology per target for now. should be extended in the future.
-		scanTarget.Technology = tech
-		break
-	}
+	scanTarget.Technologies = detectedTechnologies.ToSlice()
 	cmdResults.NewScanResults(scanTarget)
 }
 
@@ -601,17 +593,17 @@ func detectScaTargetsFromTechnologies(cmdResults *results.SecurityCommandResults
 			if len(workingDirs) == 0 {
 				// Requested technology (from params) descriptors/indicators were not found or recursive scan with NoTech value, add scan without descriptors.
 				cmdResults.NewScanResults(results.ScanTarget{
-					Target:     requestedDirectory,
-					Technology: tech,
-					Exclude:    params.Exclusions(),
+					Target:       requestedDirectory,
+					Technologies: []techutils.Technology{tech},
+					Exclude:      params.Exclusions(),
 				})
 			}
 			for workingDir, descriptors := range workingDirs {
 				// Add scan for each detected working directory.
 				targetResults := cmdResults.NewScanResults(results.ScanTarget{
-					Target:     workingDir,
-					Technology: tech,
-					Exclude:    params.Exclusions(),
+					Target:       workingDir,
+					Technologies: []techutils.Technology{tech},
+					Exclude:      params.Exclusions(),
 				})
 				if tech != techutils.NoTech {
 					targetResults.SetDescriptors(descriptors...)
@@ -789,7 +781,7 @@ func createJasScansTask(auditParallelRunner *utils.SecurityParallelRunner, scanR
 				CvesProvider: func() (directCves []string, indirectCves []string) {
 					if len(targetResult.GetScaScansXrayResults()) > 0 {
 						// TODO: remove this once the new SCA flow with cdx is fully implemented.
-						return results.ExtractCvesFromScanResponse(targetResult.GetScaScansXrayResults(), results.GetTargetDirectDependencies(targetResult, auditParams.ShouldGetFlatTreeForApplicableScan(targetResult.Technology), true))
+						return results.ExtractCvesFromScanResponse(targetResult.GetScaScansXrayResults(), results.GetTargetDirectDependencies(targetResult, auditParams.ShouldGetFlatTreeForApplicableScan(targetResult.ScanTarget), true))
 					} else if targetResult.ScaResults != nil && targetResult.ScaResults.Sbom != nil {
 						return results.ExtractCdxDependenciesCves(targetResult.ScaResults.Sbom)
 					}
diff --git a/commands/audit/audit_test.go b/commands/audit/audit_test.go
index 81b43f88d..fb2ecd2ea 100644
--- a/commands/audit/audit_test.go
+++ b/commands/audit/audit_test.go
@@ -64,8 +64,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Go,
-						Target:     filepath.Join(dir, "dir", "go"),
+						Technologies: []techutils.Technology{techutils.Go},
+						Target:       filepath.Join(dir, "dir", "go"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -74,8 +74,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Maven,
-						Target:     filepath.Join(dir, "dir", "maven"),
+						Technologies: []techutils.Technology{techutils.Maven},
+						Target:       filepath.Join(dir, "dir", "maven"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -88,8 +88,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Npm,
-						Target:     filepath.Join(dir, "dir", "npm"),
+						Technologies: []techutils.Technology{techutils.Npm},
+						Target:       filepath.Join(dir, "dir", "npm"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -116,8 +116,8 @@ func TestDetectScansToPerform(t *testing.T) {
 			expected: []*results.TargetResults{
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Nuget,
-						Target:     filepath.Join(dir, "Nuget"),
+						Technologies: []techutils.Technology{techutils.Nuget},
+						Target:       filepath.Join(dir, "Nuget"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -126,8 +126,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Go,
-						Target:     filepath.Join(dir, "dir", "go"),
+						Technologies: []techutils.Technology{techutils.Go},
+						Target:       filepath.Join(dir, "dir", "go"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -136,8 +136,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Maven,
-						Target:     filepath.Join(dir, "dir", "maven"),
+						Technologies: []techutils.Technology{techutils.Maven},
+						Target:       filepath.Join(dir, "dir", "maven"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -150,8 +150,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Npm,
-						Target:     filepath.Join(dir, "dir", "npm"),
+						Technologies: []techutils.Technology{techutils.Npm},
+						Target:       filepath.Join(dir, "dir", "npm"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -160,8 +160,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Yarn,
-						Target:     filepath.Join(dir, "yarn"),
+						Technologies: []techutils.Technology{techutils.Yarn},
+						Target:       filepath.Join(dir, "yarn"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -170,8 +170,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Pip,
-						Target:     filepath.Join(dir, "yarn", "Pip"),
+						Technologies: []techutils.Technology{techutils.Pip},
+						Target:       filepath.Join(dir, "yarn", "Pip"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -180,8 +180,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Pipenv,
-						Target:     filepath.Join(dir, "yarn", "Pipenv"),
+						Technologies: []techutils.Technology{techutils.Pipenv},
+						Target:       filepath.Join(dir, "yarn", "Pipenv"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -201,8 +201,8 @@ func TestDetectScansToPerform(t *testing.T) {
 			expected: []*results.TargetResults{
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Npm,
-						Target:     filepath.Join(dir, "dir", "npm"),
+						Technologies: []techutils.Technology{techutils.Npm},
+						Target:       filepath.Join(dir, "dir", "npm"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -222,8 +222,8 @@ func TestDetectScansToPerform(t *testing.T) {
 			expected: []*results.TargetResults{
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Npm,
-						Target:     filepath.Join(dir, "dir", "npm"),
+						Technologies: []techutils.Technology{techutils.Npm},
+						Target:       filepath.Join(dir, "dir", "npm"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -250,8 +250,8 @@ func TestDetectScansToPerform(t *testing.T) {
 			expected: []*results.TargetResults{
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Go,
-						Target:     filepath.Join(dir, "dir", "go"),
+						Technologies: []techutils.Technology{techutils.Go},
+						Target:       filepath.Join(dir, "dir", "go"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -260,8 +260,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Maven,
-						Target:     filepath.Join(dir, "dir", "maven"),
+						Technologies: []techutils.Technology{techutils.Maven},
+						Target:       filepath.Join(dir, "dir", "maven"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -274,8 +274,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Npm,
-						Target:     filepath.Join(dir, "dir", "npm"),
+						Technologies: []techutils.Technology{techutils.Npm},
+						Target:       filepath.Join(dir, "dir", "npm"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -284,8 +284,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Pip,
-						Target:     filepath.Join(dir, "yarn", "Pip"),
+						Technologies: []techutils.Technology{techutils.Pip},
+						Target:       filepath.Join(dir, "yarn", "Pip"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -294,8 +294,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Pipenv,
-						Target:     filepath.Join(dir, "yarn", "Pipenv"),
+						Technologies: []techutils.Technology{techutils.Pipenv},
+						Target:       filepath.Join(dir, "yarn", "Pipenv"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -304,8 +304,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				},
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Yarn,
-						Target:     filepath.Join(dir, "yarn"),
+						Technologies: []techutils.Technology{techutils.Yarn},
+						Target:       filepath.Join(dir, "yarn"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -325,8 +325,8 @@ func TestDetectScansToPerform(t *testing.T) {
 			expected: []*results.TargetResults{
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Maven,
-						Target:     filepath.Join(dir, "dir", "maven"),
+						Technologies: []techutils.Technology{techutils.Maven},
+						Target:       filepath.Join(dir, "dir", "maven"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -350,8 +350,8 @@ func TestDetectScansToPerform(t *testing.T) {
 			expected: []*results.TargetResults{
 				{
 					ScanTarget: results.ScanTarget{
-						Technology: techutils.Go,
-						Target:     filepath.Join(dir, "dir", "go"),
+						Technologies: []techutils.Technology{techutils.Go},
+						Target:       filepath.Join(dir, "dir", "go"),
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 					ScaResults: &results.ScaScanResults{
@@ -371,9 +371,9 @@ func TestDetectScansToPerform(t *testing.T) {
 			expected: []*results.TargetResults{
 				{
 					ScanTarget: results.ScanTarget{
-						Target:     dir,
-						Include:    []string{filepath.Join(dir, "dir", "npm")},
-						Technology: techutils.Npm,
+						Target:       dir,
+						Include:      []string{filepath.Join(dir, "dir", "npm")},
+						Technologies: []techutils.Technology{techutils.Npm},
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 				},
@@ -390,9 +390,9 @@ func TestDetectScansToPerform(t *testing.T) {
 			expected: []*results.TargetResults{
 				{
 					ScanTarget: results.ScanTarget{
-						Target:     dir,
-						Include:    []string{filepath.Join(dir, "dir", "maven")},
-						Technology: techutils.Maven,
+						Target:       dir,
+						Include:      []string{filepath.Join(dir, "dir", "maven")},
+						Technologies: []techutils.Technology{techutils.Maven},
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 				},
@@ -1171,8 +1171,8 @@ func TestAudit_DiffScanFlow(t *testing.T) {
 				Targets: []*results.TargetResults{
 					{
 						ScanTarget: results.ScanTarget{
-							Target:     tempProjectPath,
-							Technology: techutils.Pip,
+							Target:       tempProjectPath,
+							Technologies: []techutils.Technology{techutils.Pip},
 						},
 						ScaResults: &results.ScaScanResults{
 							Sbom: &cyclonedx.BOM{
diff --git a/commands/audit/auditparams.go b/commands/audit/auditparams.go
index 739a7a21b..c25340039 100644
--- a/commands/audit/auditparams.go
+++ b/commands/audit/auditparams.go
@@ -311,15 +311,14 @@ func (params *AuditParams) DiffMode() bool {
 // Our solution for this case is to send all dependencies to the CA scanner.
 // When thirdPartyApplicabilityScan is true, use flatten graph to include all the dependencies in applicability scanning.
 // Only npm is supported for this flag.
-func (params *AuditParams) ShouldGetFlatTreeForApplicableScan(tech techutils.Technology) bool {
+func (params *AuditParams) ShouldGetFlatTreeForApplicableScan(target results.ScanTarget) bool {
 	if params.bomGenerator == nil {
 		return false
 	}
-	// Check if bomGenerator is BuildInfo type, if not, return false
 	if _, success := params.bomGenerator.(*buildinfo.BuildInfoBomGenerator); !success {
 		return false
 	}
-	return tech == techutils.Pip || (params.thirdPartyApplicabilityScan && tech == techutils.Npm)
+	return target.HasTechnology(techutils.Pip) || (params.thirdPartyApplicabilityScan && target.HasTechnology(techutils.Npm))
 }
 
 func (params *AuditParams) SetViolationGenerator(violationGenerator policy.PolicyHandler) *AuditParams {
diff --git a/commands/enrich/enrich.go b/commands/enrich/enrich.go
index 74b068d8c..5d940231f 100644
--- a/commands/enrich/enrich.go
+++ b/commands/enrich/enrich.go
@@ -265,7 +265,7 @@ func (enrichCmd *EnrichCommand) createIndexerHandlerFunc(indexedFileProducer par
 					return targetResults.AddTargetError(fmt.Errorf("%s failed to import graph: %s", logPrefix, err.Error()), false)
 				}
 				targetResults.ScaScanResults(scan.GetScaScansStatusCode(err, *scanResults), *scanResults)
-				targetResults.Technology = techutils.Technology(scanResults.ScannedPackageType)
+				targetResults.Technologies = []techutils.Technology{techutils.Technology(scanResults.ScannedPackageType)}
 				return
 			}
 
diff --git a/commands/scan/scan.go b/commands/scan/scan.go
index 82f028803..35a223344 100644
--- a/commands/scan/scan.go
+++ b/commands/scan/scan.go
@@ -539,7 +539,7 @@ func (scanCmd *ScanCommand) RunBinaryScaScan(fileTarget string, cmdResults *resu
 		return
 	}
 	targetResults.ScaScanResults(scan.GetScaScansStatusCode(err, *graphScanResults), *graphScanResults)
-	targetResults.Technology = techutils.ToTechnology(graphScanResults.ScannedPackageType)
+	targetResults.Technologies = []techutils.Technology{techutils.ToTechnology(graphScanResults.ScannedPackageType)}
 	// Dump scan response if requested
 	if scanCmd.outputDir == "" {
 		return
@@ -648,7 +648,7 @@ func getJasScanTypes(cmdType utils.CommandType, targetResults *results.TargetRes
 }
 
 func isDockerBinary(cmdType utils.CommandType, targetResults *results.TargetResults) bool {
-	return cmdType == utils.DockerImage || targetResults.Technology == techutils.Docker || targetResults.Technology == techutils.Oci
+	return cmdType == utils.DockerImage || targetResults.HasTechnology(techutils.Docker) || targetResults.HasTechnology(techutils.Oci)
 }
 
 func getJasDeprecatedAppsConfigModule(target string) (jfrogappsconfig.Module, error) {
diff --git a/jas/runner/jasrunner_test.go b/jas/runner/jasrunner_test.go
index 9bac6e1c9..854715c0c 100644
--- a/jas/runner/jasrunner_test.go
+++ b/jas/runner/jasrunner_test.go
@@ -42,7 +42,7 @@ func TestJasRunner_AnalyzerManagerNotExist(t *testing.T) {
 func TestJasRunner(t *testing.T) {
 	assert.NoError(t, testUtils.PrepareAnalyzerManagerResource())
 	securityParallelRunnerForTest := utils.CreateSecurityParallelRunner(cliutils.Threads)
-	targetResults := results.NewCommandResults(utils.SourceCode).SetEntitledForJas(true).SetSecretValidation(true).NewScanResults(results.ScanTarget{Target: "target", Technology: techutils.Pip})
+	targetResults := results.NewCommandResults(utils.SourceCode).SetEntitledForJas(true).SetSecretValidation(true).NewScanResults(results.ScanTarget{Target: "target", Technologies: []techutils.Technology{techutils.Pip}})
 
 	jasScanner, err := jas.NewJasScanner(&jas.FakeServerDetails, jas.WithEnvVars(false, jas.NotDiffScanEnvValue, jas.GetAnalyzerManagerXscEnvVars(false, "", "", "", []string{}, targetResults.GetTechnologies()...)))
 	assert.NoError(t, err)
diff --git a/sca/bom/buildinfo/buildinfobom.go b/sca/bom/buildinfo/buildinfobom.go
index 53c0ae235..accface35 100644
--- a/sca/bom/buildinfo/buildinfobom.go
+++ b/sca/bom/buildinfo/buildinfobom.go
@@ -102,7 +102,7 @@ func (b *BuildInfoBomGenerator) GenerateSbom(target results.ScanTarget) (sbom *c
 			generalError = errors.Join(generalError, errorutils.CheckError(os.Chdir(currentWorkingDir)))
 		}()
 	}
-	if target.Technology == techutils.NoTech {
+	if target.FirstTechnology() == techutils.NoTech {
 		log.Debug(fmt.Sprintf("Couldn't determine a package manager or build tool used by '%s'.", target.Target))
 		return
 	}
@@ -147,13 +147,14 @@ func (b *BuildInfoBomGenerator) buildDependencyTree(scan results.ScanTarget) (*D
 	if err := os.Chdir(scan.Target); err != nil {
 		return nil, errorutils.CheckError(err)
 	}
-	serverDetails, err := SetResolutionRepoInParamsIfExists(&b.params, scan.Technology)
+	tech := scan.FirstTechnology()
+	serverDetails, err := SetResolutionRepoInParamsIfExists(&b.params, tech)
 	if err != nil {
 		return nil, err
 	}
-	treeResult, techErr := GetTechDependencyTree(b.params, serverDetails, scan.Technology)
+	treeResult, techErr := GetTechDependencyTree(b.params, serverDetails, tech)
 	if techErr != nil {
-		return nil, fmt.Errorf("failed while building '%s' dependency tree: %w", scan.Technology, techErr)
+		return nil, fmt.Errorf("failed while building '%s' dependency tree: %w", tech, techErr)
 	}
 	if treeResult.FlatTree == nil || len(treeResult.FlatTree.Nodes) == 0 {
 		return nil, errorutils.CheckErrorf("no dependencies were found. Please try to build your project and re-run the audit command")
diff --git a/tests/validations/test_validate_simple_json.go b/tests/validations/test_validate_simple_json.go
index 5f2e60b1b..6612c66fd 100644
--- a/tests/validations/test_validate_simple_json.go
+++ b/tests/validations/test_validate_simple_json.go
@@ -158,7 +158,6 @@ func validateVulnerabilityOrViolationRow(t *testing.T, exactMatch bool, expected
 		StringValidation{Expected: expected.Summary, Actual: actual.Summary, Msg: fmt.Sprintf("IssueId %s: Summary mismatch", expected.IssueId)},
 		StringValidation{Expected: expected.Severity, Actual: actual.Severity, Msg: fmt.Sprintf("IssueId %s: Severity mismatch", expected.IssueId)},
 		StringValidation{Expected: expected.Applicable, Actual: actual.Applicable, Msg: fmt.Sprintf("IssueId %s: Applicable mismatch", expected.IssueId)},
-		// StringValidation{Expected: expected.Technology.String(), Actual: actual.Technology.String(), Msg: fmt.Sprintf("IssueId %s: Technology mismatch", expected.IssueId)},
 		ListValidation[string]{Expected: expected.References, Actual: actual.References, Msg: fmt.Sprintf("IssueId %s: References mismatch", expected.IssueId)},
 
 		StringValidation{Expected: expected.ImpactedDependencyType, Actual: actual.ImpactedDependencyType, Msg: fmt.Sprintf("IssueId %s: ImpactedDependencyType mismatch", expected.IssueId)},
diff --git a/utils/results/conversion/convertor_test.go b/utils/results/conversion/convertor_test.go
index d08950c85..07b56c8e6 100644
--- a/utils/results/conversion/convertor_test.go
+++ b/utils/results/conversion/convertor_test.go
@@ -162,7 +162,7 @@ func getAuditTestResults(unique bool) (*results.SecurityCommandResults, validati
 	// Create basic command results to be converted to different formats
 	cmdResults := results.NewCommandResults(utils.SourceCode)
 	cmdResults.SetEntitledForJas(true).SetXrayVersion("3.107.13").SetXscVersion("1.12.5").SetMultiScanId("7d5e4733-3f93-11ef-8147-e610d09d7daa")
-	npmTargetResults := cmdResults.NewScanResults(results.ScanTarget{Target: filepath.Join("Users", "user", "project-with-issues"), Technology: techutils.Npm}).SetDescriptors(filepath.Join("Users", "user", "project-with-issues", "package.json"))
+	npmTargetResults := cmdResults.NewScanResults(results.ScanTarget{Target: filepath.Join("Users", "user", "project-with-issues"), Technologies: []techutils.Technology{techutils.Npm}}).SetDescriptors(filepath.Join("Users", "user", "project-with-issues", "package.json"))
 	// SCA scan results
 	npmTargetResults.ScaScanResults(0, services.ScanResponse{
 		ScanId: "711851ce-68c4-4dfd-7afb-c29737ebcb96",
@@ -606,7 +606,7 @@ func getDockerScanTestResults(unique bool) (*results.SecurityCommandResults, val
 	// Create basic command results to be converted to different formats
 	cmdResults := results.NewCommandResults(utils.DockerImage)
 	cmdResults.SetEntitledForJas(true).SetXrayVersion("3.107.13").SetXscVersion("1.12.5").SetMultiScanId("7d5e4733-3f93-11ef-8147-e610d09d7daa")
-	dockerImageTarget := cmdResults.NewScanResults(results.ScanTarget{Target: filepath.Join("temp", "folders", "T", "jfrog.cli.temp.-11-11", "image.tar"), Name: "platform.jfrog.io/swamp-docker/swamp:latest", Technology: techutils.Oci})
+	dockerImageTarget := cmdResults.NewScanResults(results.ScanTarget{Target: filepath.Join("temp", "folders", "T", "jfrog.cli.temp.-11-11", "image.tar"), Name: "platform.jfrog.io/swamp-docker/swamp:latest", Technologies: []techutils.Technology{techutils.Oci}})
 	// SCA scan results
 	dockerImageTarget.ScaScanResults(0, services.ScanResponse{
 		ScanId: "27da9106-88ea-416b-799b-bc7d15783473",
diff --git a/utils/results/conversion/simplejsonparser/simplejsonparser.go b/utils/results/conversion/simplejsonparser/simplejsonparser.go
index ad9559057..938a2e4af 100644
--- a/utils/results/conversion/simplejsonparser/simplejsonparser.go
+++ b/utils/results/conversion/simplejsonparser/simplejsonparser.go
@@ -242,7 +242,7 @@ func (sjc *CmdResultsSimpleJsonConverter) createVulnerabilityOrViolationRowFromC
 		ImpactPaths:              impactPaths,
 		Cves:                     results.CdxVulnToCveRows(vulnerability, contextualAnalysis),
 		FixedVersions:            results.CdxToFixedVersions(fixedVersions),
-		Technology:               results.GetIssueTechnology(compType, sjc.currentTarget.Technology),
+		Technology:               results.GetIssueTechnology(compType, sjc.currentTarget.FirstTechnology()),
 		References:               toReferences(vulnerability),
 		Applicable:               applicabilityStatus.ToString(sjc.pretty),
 		JfrogResearchInformation: jfrogResearch,
@@ -425,7 +425,7 @@ func addSimpleJsonVulnerability(target results.ScanTarget, vulnerabilitiesRows *
 				References:               vulnerability.References,
 				JfrogResearchInformation: results.ConvertJfrogResearchInformation(vulnerability.ExtendedInformation),
 				ImpactPaths:              impactPaths,
-				Technology:               results.GetIssueTechnology(vulnerability.Technology, target.Technology),
+				Technology:               results.GetIssueTechnology(vulnerability.Technology, target.FirstTechnology()),
 				Applicable:               applicabilityStatus.ToString(pretty),
 			},
 		)
diff --git a/utils/results/conversion/simplejsonparser/simplejsonparser_test.go b/utils/results/conversion/simplejsonparser/simplejsonparser_test.go
index 9a84fd14b..bba4e34ce 100644
--- a/utils/results/conversion/simplejsonparser/simplejsonparser_test.go
+++ b/utils/results/conversion/simplejsonparser/simplejsonparser_test.go
@@ -12,6 +12,7 @@ import (
 	"github.com/jfrog/jfrog-cli-security/utils/jasutils"
 	"github.com/jfrog/jfrog-cli-security/utils/results"
 	"github.com/jfrog/jfrog-cli-security/utils/severityutils"
+	"github.com/jfrog/jfrog-cli-security/utils/techutils"
 	"github.com/jfrog/jfrog-client-go/xray/services"
 )
 
@@ -487,3 +488,84 @@ func TestPrepareSimpleJsonJasIssues(t *testing.T) {
 		})
 	}
 }
+
+func TestPrepareSimpleJsonVulnerabilities_Technology(t *testing.T) {
+	testCases := []struct {
+		name                 string
+		target               results.ScanTarget
+		vulns                []services.Vulnerability
+		expectedTechPerIssue map[string]techutils.Technology
+	}{
+		{
+			name:   "Target technology used as fallback",
+			target: results.ScanTarget{Target: "target", Technologies: []techutils.Technology{techutils.Npm}},
+			vulns: []services.Vulnerability{
+				{
+					IssueId:  "XRAY-100",
+					Summary:  "vuln without tech",
+					Severity: "High",
+					Components: map[string]services.Component{
+						"npm://dep:1.0.0": {
+							ImpactPaths: [][]services.ImpactPathNode{{{ComponentId: "root"}, {ComponentId: "npm://dep:1.0.0"}}},
+						},
+					},
+				},
+			},
+			expectedTechPerIssue: map[string]techutils.Technology{
+				"XRAY-100": techutils.Npm,
+			},
+		},
+		{
+			name:   "Response technology takes precedence over empty target",
+			target: results.ScanTarget{Target: "target"},
+			vulns: []services.Vulnerability{
+				{
+					IssueId:    "XRAY-200",
+					Summary:    "vuln with response tech",
+					Severity:   "Medium",
+					Technology: "pip",
+					Components: map[string]services.Component{
+						"pip://dep:2.0.0": {
+							ImpactPaths: [][]services.ImpactPathNode{{{ComponentId: "root"}, {ComponentId: "pip://dep:2.0.0"}}},
+						},
+					},
+				},
+			},
+			expectedTechPerIssue: map[string]techutils.Technology{
+				"XRAY-200": techutils.Pip,
+			},
+		},
+		{
+			name:   "Target technology wins when response is generic",
+			target: results.ScanTarget{Target: "target", Technologies: []techutils.Technology{techutils.Maven}},
+			vulns: []services.Vulnerability{
+				{
+					IssueId:    "XRAY-300",
+					Summary:    "generic vuln",
+					Severity:   "Low",
+					Technology: "generic",
+					Components: map[string]services.Component{
+						"maven://dep:3.0.0": {
+							ImpactPaths: [][]services.ImpactPathNode{{{ComponentId: "root"}, {ComponentId: "maven://dep:3.0.0"}}},
+						},
+					},
+				},
+			},
+			expectedTechPerIssue: map[string]techutils.Technology{
+				"XRAY-300": techutils.Maven,
+			},
+		},
+	}
+	for _, tc := range testCases {
+		t.Run(tc.name, func(t *testing.T) {
+			rows, err := PrepareSimpleJsonVulnerabilities(tc.target, nil, services.ScanResponse{Vulnerabilities: tc.vulns}, false, false)
+			assert.NoError(t, err)
+			for _, row := range rows {
+				expectedTech, ok := tc.expectedTechPerIssue[row.IssueId]
+				if assert.True(t, ok, "unexpected issue %s in output", row.IssueId) {
+					assert.Equal(t, expectedTech, row.Technology, "IssueId %s: Technology mismatch", row.IssueId)
+				}
+			}
+		})
+	}
+}
diff --git a/utils/results/results.go b/utils/results/results.go
index 5f7b27482..5ef46da48 100644
--- a/utils/results/results.go
+++ b/utils/results/results.go
@@ -220,15 +220,34 @@ type ScanTarget struct {
 	Exclude []string `json:"exclude,omitempty"`
 	// Logical name of the target (build name / module name / docker image name...)
 	Name string `json:"name,omitempty"`
-	// Optional field (not used only in build scan) to provide the technology of the target
-	// TODO: convert to list of technologies
-	Technology techutils.Technology `json:"technology,omitempty"`
+	// Technologies detected or assigned for this target
+	Technologies []techutils.Technology `json:"technologies,omitempty"`
 	// Optional field to provide the deprecated apps config module for the target
 	DeprecatedAppsConfigModule *jfrogappsconfig.Module `json:"deprecated_apps_config_module,omitempty"`
 	// Optional field to provide the central config modules for the target
 	CentralConfigModules []xscServices.Module `json:"central_config_modules,omitempty"`
 }
 
+// FirstTechnology returns the first technology in the list, or empty if none are set.
+// Use this only in backward-compatible call sites where a single technology is expected
+// (e.g. old-flow BuildInfo BOM generation, legacy issue-technology fallback).
+// For multi-tech aware code, prefer iterating Technologies directly or using HasTechnology().
+func (st ScanTarget) FirstTechnology() techutils.Technology {
+	if len(st.Technologies) == 0 {
+		return ""
+	}
+	return st.Technologies[0]
+}
+
+func (st ScanTarget) HasTechnology(tech techutils.Technology) bool {
+	for _, t := range st.Technologies {
+		if t == tech {
+			return true
+		}
+	}
+	return false
+}
+
 func (st ScanTarget) String() (str string) {
 	if len(st.Include) > 0 {
 		relativePaths := []string{}
@@ -242,11 +261,15 @@ func (st ScanTarget) String() (str string) {
 	if st.Name != "" {
 		str = st.Name
 	}
-	tech := st.Technology.String()
-	if tech == techutils.NoTech.String() {
-		tech = "unknown"
+	if len(st.Technologies) == 0 {
+		str += " [unknown]"
+	} else {
+		techNames := make([]string, 0, len(st.Technologies))
+		for _, t := range st.Technologies {
+			techNames = append(techNames, t.String())
+		}
+		str += fmt.Sprintf(" [%s]", strings.Join(techNames, ", "))
 	}
-	str += fmt.Sprintf(" [%s]", tech)
 	return
 }
 
@@ -585,9 +608,7 @@ func (sr *TargetResults) GetScaScansXrayResults() (results []services.ScanRespon
 
 func (sr *TargetResults) GetTechnologies() []techutils.Technology {
 	technologiesSet := datastructures.MakeSet[techutils.Technology]()
-	if sr.Technology != "" {
-		technologiesSet.Add(sr.Technology)
-	}
+	technologiesSet.AddElements(sr.Technologies...)
 	if sr.ScaResults == nil {
 		return technologiesSet.ToSlice()
 	}
diff --git a/utils/results/results_test.go b/utils/results/results_test.go
index d11be4516..63676264e 100644
--- a/utils/results/results_test.go
+++ b/utils/results/results_test.go
@@ -24,33 +24,41 @@ func TestScanTarget_String(t *testing.T) {
 		},
 		{
 			name:     "Target with technology",
-			target:   ScanTarget{Target: "/path/to/project", Technology: techutils.Npm},
+			target:   ScanTarget{Target: "/path/to/project", Technologies: []techutils.Technology{techutils.Npm}},
 			expected: "/path/to/project [npm]",
 		},
 		{
 			name:     "Target with name overrides path",
-			target:   ScanTarget{Target: "/path/to/project", Name: "my-project", Technology: techutils.Go},
+			target:   ScanTarget{Target: "/path/to/project", Name: "my-project", Technologies: []techutils.Technology{techutils.Go}},
 			expected: "my-project [go]",
 		},
 		{
 			name: "Target with include dirs",
 			target: ScanTarget{
-				Target:     "/root",
-				Include:    []string{"/root/sub1", "/root/sub2"},
-				Technology: techutils.Maven,
+				Target:       "/root",
+				Include:      []string{"/root/sub1", "/root/sub2"},
+				Technologies: []techutils.Technology{techutils.Maven},
 			},
 			expected: "/root {sub1, sub2} [maven]",
 		},
 		{
 			name: "Target with include dirs and name - name wins",
 			target: ScanTarget{
-				Target:     "/root",
-				Include:    []string{"/root/sub1"},
-				Name:       "override-name",
-				Technology: techutils.Pip,
+				Target:       "/root",
+				Include:      []string{"/root/sub1"},
+				Name:         "override-name",
+				Technologies: []techutils.Technology{techutils.Pip},
 			},
 			expected: "override-name [pip]",
 		},
+		{
+			name: "Target with multiple technologies",
+			target: ScanTarget{
+				Target:       "/path/to/project",
+				Technologies: []techutils.Technology{techutils.Npm, techutils.Go},
+			},
+			expected: "/path/to/project [npm, go]",
+		},
 	}
 	for _, tt := range tests {
 		t.Run(tt.name, func(t *testing.T) {

From 87a9ec5393d5162aba535e8bcca980b84a7adb21 Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Wed, 15 Apr 2026 11:24:50 +0300
Subject: [PATCH 25/26] Fix TestDetectScansToPerform

---
 commands/audit/audit_test.go | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/commands/audit/audit_test.go b/commands/audit/audit_test.go
index fb2ecd2ea..4cce63bf0 100644
--- a/commands/audit/audit_test.go
+++ b/commands/audit/audit_test.go
@@ -58,7 +58,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				{
 					// We requested specific technologies, Nuget is not in the list but we want to run JAS on it
 					ScanTarget: results.ScanTarget{
-						Target: filepath.Join(dir, "Nuget"),
+						Target:       filepath.Join(dir, "Nuget"),
+						Technologies: []techutils.Technology{techutils.NoTech},
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 				},
@@ -99,7 +100,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				{
 					// We requested specific technologies, yarn is not in the list but we want to run JAS on it
 					ScanTarget: results.ScanTarget{
-						Target: filepath.Join(dir, "yarn"),
+						Target:       filepath.Join(dir, "yarn"),
+						Technologies: []techutils.Technology{techutils.NoTech},
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 				},
@@ -233,7 +235,8 @@ func TestDetectScansToPerform(t *testing.T) {
 				{
 					// Requested tech npm had no other descriptors at root; add JAS-only target for requested directory
 					ScanTarget: results.ScanTarget{
-						Target: dir,
+						Target:       dir,
+						Technologies: []techutils.Technology{techutils.NoTech},
 					},
 					JasResults: &results.JasScansResults{JasVulnerabilities: results.JasScanResults{}, JasViolations: results.JasScanResults{}},
 				},

From 3acb0201c539c6e7a9143d89e736fc293776985d Mon Sep 17 00:00:00 2001
From: attiasas <assafattias93@gmail.com>
Date: Mon, 4 May 2026 14:48:24 +0300
Subject: [PATCH 26/26] remove unrelated changes

---
 .../npm/npm-project/.jfrog/jfrog-cli.conf.v6  |   17 -
 .../ClassLibrary1.csproj.nuget.dgspec.json    |  105 -
 .../obj/ClassLibrary1.csproj.nuget.g.props    |   15 -
 .../obj/ClassLibrary1.csproj.nuget.g.targets  |    6 -
 .../ClassLibrary1/obj/project.assets.json     | 4677 ---------------
 .../ClassLibrary1/obj/project.nuget.cache     |  107 -
 .../obj/TestApp1.csproj.nuget.dgspec.json     |  226 -
 .../obj/TestApp1.csproj.nuget.g.props         |   15 -
 .../obj/TestApp1.csproj.nuget.g.targets       |    2 -
 .../multi/TestApp1/obj/project.assets.json    | 5324 -----------------
 .../multi/TestApp1/obj/project.nuget.cache    |  156 -
 11 files changed, 10650 deletions(-)
 delete mode 100644 tests/testdata/projects/package-managers/npm/npm-project/.jfrog/jfrog-cli.conf.v6
 delete mode 100644 tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/ClassLibrary1.csproj.nuget.dgspec.json
 delete mode 100644 tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/ClassLibrary1.csproj.nuget.g.props
 delete mode 100644 tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/ClassLibrary1.csproj.nuget.g.targets
 delete mode 100644 tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/project.assets.json
 delete mode 100644 tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/project.nuget.cache
 delete mode 100644 tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/TestApp1.csproj.nuget.dgspec.json
 delete mode 100644 tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/TestApp1.csproj.nuget.g.props
 delete mode 100644 tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/TestApp1.csproj.nuget.g.targets
 delete mode 100644 tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/project.assets.json
 delete mode 100644 tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/project.nuget.cache

diff --git a/tests/testdata/projects/package-managers/npm/npm-project/.jfrog/jfrog-cli.conf.v6 b/tests/testdata/projects/package-managers/npm/npm-project/.jfrog/jfrog-cli.conf.v6
deleted file mode 100644
index 5c7cfaf7f..000000000
--- a/tests/testdata/projects/package-managers/npm/npm-project/.jfrog/jfrog-cli.conf.v6
+++ /dev/null
@@ -1,17 +0,0 @@
-{
-  "servers": [
-    {
-      "url": "http://127.0.0.1:57602/",
-      "artifactoryUrl": "http://127.0.0.1:57602/",
-      "distributionUrl": "http://127.0.0.1:57602/distribution/",
-      "xrayUrl": "http://127.0.0.1:57602/",
-      "missionControlUrl": "http://127.0.0.1:57602/mc/",
-      "pipelinesUrl": "http://127.0.0.1:57602/pipelines/",
-      "user": "admin",
-      "password": "password",
-      "serverId": "test",
-      "isDefault": true
-    }
-  ],
-  "version": "6"
-}
\ No newline at end of file
diff --git a/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/ClassLibrary1.csproj.nuget.dgspec.json b/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/ClassLibrary1.csproj.nuget.dgspec.json
deleted file mode 100644
index c3ce5ae1f..000000000
--- a/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/ClassLibrary1.csproj.nuget.dgspec.json
+++ /dev/null
@@ -1,105 +0,0 @@
-{
-  "format": 1,
-  "restore": {
-    "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/ClassLibrary1.csproj": {}
-  },
-  "projects": {
-    "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/ClassLibrary1.csproj": {
-      "version": "1.0.0",
-      "restore": {
-        "projectUniqueName": "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/ClassLibrary1.csproj",
-        "projectName": "ClassLibrary1",
-        "projectPath": "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/ClassLibrary1.csproj",
-        "packagesPath": "/Users/assafa/.nuget/packages/",
-        "outputPath": "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/",
-        "projectStyle": "PackageReference",
-        "configFilePaths": [
-          "/Users/assafa/.nuget/NuGet/NuGet.Config"
-        ],
-        "originalTargetFrameworks": [
-          "netstandard2.0"
-        ],
-        "sources": {
-          "https://api.nuget.org/v3/index.json": {}
-        },
-        "frameworks": {
-          "netstandard2.0": {
-            "targetAlias": "netstandard2.0",
-            "projectReferences": {}
-          }
-        },
-        "warningProperties": {
-          "warnAsError": [
-            "NU1605"
-          ]
-        },
-        "restoreAuditProperties": {
-          "enableAudit": "true",
-          "auditLevel": "low",
-          "auditMode": "direct"
-        }
-      },
-      "frameworks": {
-        "netstandard2.0": {
-          "targetAlias": "netstandard2.0",
-          "dependencies": {
-            "Microsoft.AspNetCore.Hosting": {
-              "target": "Package",
-              "version": "[2.1.0, )"
-            },
-            "NETStandard.Library": {
-              "suppressParent": "All",
-              "target": "Package",
-              "version": "[2.0.3, )",
-              "autoReferenced": true
-            },
-            "Newtonsoft.Json": {
-              "target": "Package",
-              "version": "[12.0.3, )"
-            },
-            "Serilog.AspNetCore": {
-              "target": "Package",
-              "version": "[2.1.1, )"
-            },
-            "Serilog.Formatting.Compact": {
-              "target": "Package",
-              "version": "[1.0.0, )"
-            },
-            "Serilog.Settings.Configuration": {
-              "target": "Package",
-              "version": "[3.0.1, )"
-            },
-            "Serilog.Sinks.Console": {
-              "target": "Package",
-              "version": "[3.1.1, )"
-            },
-            "Serilog.Sinks.EventLog": {
-              "target": "Package",
-              "version": "[3.1.0, )"
-            },
-            "Serilog.Sinks.File": {
-              "target": "Package",
-              "version": "[4.0.0, )"
-            },
-            "System.IO.FileSystem.AccessControl": {
-              "target": "Package",
-              "version": "[4.7.0, )"
-            }
-          },
-          "imports": [
-            "net461",
-            "net462",
-            "net47",
-            "net471",
-            "net472",
-            "net48",
-            "net481"
-          ],
-          "assetTargetFallback": true,
-          "warn": true,
-          "runtimeIdentifierGraphPath": "/Users/assafa/.dotnet/sdk/8.0.418/RuntimeIdentifierGraph.json"
-        }
-      }
-    }
-  }
-}
\ No newline at end of file
diff --git a/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/ClassLibrary1.csproj.nuget.g.props b/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/ClassLibrary1.csproj.nuget.g.props
deleted file mode 100644
index d8e90e26e..000000000
--- a/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/ClassLibrary1.csproj.nuget.g.props
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="utf-8" standalone="no"?>
-<Project ToolsVersion="14.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
-  <PropertyGroup Condition=" '$(ExcludeRestorePackageImports)' != 'true' ">
-    <RestoreSuccess Condition=" '$(RestoreSuccess)' == '' ">True</RestoreSuccess>
-    <RestoreTool Condition=" '$(RestoreTool)' == '' ">NuGet</RestoreTool>
-    <ProjectAssetsFile Condition=" '$(ProjectAssetsFile)' == '' ">$(MSBuildThisFileDirectory)project.assets.json</ProjectAssetsFile>
-    <NuGetPackageRoot Condition=" '$(NuGetPackageRoot)' == '' ">/Users/assafa/.nuget/packages/</NuGetPackageRoot>
-    <NuGetPackageFolders Condition=" '$(NuGetPackageFolders)' == '' ">/Users/assafa/.nuget/packages/</NuGetPackageFolders>
-    <NuGetProjectStyle Condition=" '$(NuGetProjectStyle)' == '' ">PackageReference</NuGetProjectStyle>
-    <NuGetToolVersion Condition=" '$(NuGetToolVersion)' == '' ">6.11.1</NuGetToolVersion>
-  </PropertyGroup>
-  <ItemGroup Condition=" '$(ExcludeRestorePackageImports)' != 'true' ">
-    <SourceRoot Include="/Users/assafa/.nuget/packages/" />
-  </ItemGroup>
-</Project>
\ No newline at end of file
diff --git a/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/ClassLibrary1.csproj.nuget.g.targets b/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/ClassLibrary1.csproj.nuget.g.targets
deleted file mode 100644
index 8284cdf45..000000000
--- a/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/ClassLibrary1.csproj.nuget.g.targets
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="utf-8" standalone="no"?>
-<Project ToolsVersion="14.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
-  <ImportGroup Condition=" '$(ExcludeRestorePackageImports)' != 'true' ">
-    <Import Project="$(NuGetPackageRoot)netstandard.library/2.0.3/build/netstandard2.0/NETStandard.Library.targets" Condition="Exists('$(NuGetPackageRoot)netstandard.library/2.0.3/build/netstandard2.0/NETStandard.Library.targets')" />
-  </ImportGroup>
-</Project>
\ No newline at end of file
diff --git a/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/project.assets.json b/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/project.assets.json
deleted file mode 100644
index fa1211745..000000000
--- a/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/project.assets.json
+++ /dev/null
@@ -1,4677 +0,0 @@
-{
-  "version": 3,
-  "targets": {
-    ".NETStandard,Version=v2.0": {
-      "Microsoft.AspNetCore.Hosting/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.AspNetCore.Hosting.Abstractions": "2.1.0",
-          "Microsoft.AspNetCore.Http": "2.1.0",
-          "Microsoft.AspNetCore.Http.Extensions": "2.1.0",
-          "Microsoft.Extensions.Configuration": "2.1.0",
-          "Microsoft.Extensions.Configuration.EnvironmentVariables": "2.1.0",
-          "Microsoft.Extensions.Configuration.FileExtensions": "2.1.0",
-          "Microsoft.Extensions.DependencyInjection": "2.1.0",
-          "Microsoft.Extensions.FileProviders.Physical": "2.1.0",
-          "Microsoft.Extensions.Hosting.Abstractions": "2.1.0",
-          "Microsoft.Extensions.Logging": "2.1.0",
-          "Microsoft.Extensions.Options": "2.1.0",
-          "System.Diagnostics.DiagnosticSource": "4.5.0",
-          "System.Reflection.Metadata": "1.6.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.Hosting.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.Hosting.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.AspNetCore.Hosting.Abstractions/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.AspNetCore.Hosting.Server.Abstractions": "2.1.0",
-          "Microsoft.AspNetCore.Http.Abstractions": "2.1.0",
-          "Microsoft.Extensions.Hosting.Abstractions": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.Hosting.Abstractions.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.Hosting.Abstractions.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.AspNetCore.Hosting.Server.Abstractions/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.AspNetCore.Http.Features": "2.1.0",
-          "Microsoft.Extensions.Configuration.Abstractions": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.Hosting.Server.Abstractions.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.Hosting.Server.Abstractions.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.AspNetCore.Http/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.AspNetCore.Http.Abstractions": "2.1.0",
-          "Microsoft.AspNetCore.WebUtilities": "2.1.0",
-          "Microsoft.Extensions.ObjectPool": "2.1.0",
-          "Microsoft.Extensions.Options": "2.1.0",
-          "Microsoft.Net.Http.Headers": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.Http.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.Http.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.AspNetCore.Http.Abstractions/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.AspNetCore.Http.Features": "2.1.0",
-          "System.Text.Encodings.Web": "4.5.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.Http.Abstractions.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.Http.Abstractions.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.AspNetCore.Http.Extensions/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.AspNetCore.Http.Abstractions": "2.1.0",
-          "Microsoft.Extensions.FileProviders.Abstractions": "2.1.0",
-          "Microsoft.Net.Http.Headers": "2.1.0",
-          "System.Buffers": "4.5.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.Http.Extensions.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.Http.Extensions.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.AspNetCore.Http.Features/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.Primitives": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.Http.Features.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.Http.Features.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.AspNetCore.WebUtilities/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Net.Http.Headers": "2.1.0",
-          "System.Text.Encodings.Web": "4.5.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.WebUtilities.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.AspNetCore.WebUtilities.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.CSharp/4.0.1": {
-        "type": "package",
-        "dependencies": {
-          "System.Collections": "4.0.11",
-          "System.Diagnostics.Debug": "4.0.11",
-          "System.Dynamic.Runtime": "4.0.11",
-          "System.Globalization": "4.0.11",
-          "System.Linq": "4.1.0",
-          "System.Linq.Expressions": "4.1.0",
-          "System.ObjectModel": "4.0.12",
-          "System.Reflection": "4.1.0",
-          "System.Reflection.Extensions": "4.0.1",
-          "System.Reflection.Primitives": "4.0.1",
-          "System.Reflection.TypeExtensions": "4.1.0",
-          "System.Resources.ResourceManager": "4.0.1",
-          "System.Runtime": "4.1.0",
-          "System.Runtime.Extensions": "4.1.0",
-          "System.Runtime.InteropServices": "4.1.0",
-          "System.Threading": "4.0.11"
-        },
-        "compile": {
-          "ref/netstandard1.0/Microsoft.CSharp.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard1.3/Microsoft.CSharp.dll": {}
-        }
-      },
-      "Microsoft.DotNet.PlatformAbstractions/2.0.4": {
-        "type": "package",
-        "dependencies": {
-          "System.AppContext": "4.1.0",
-          "System.Collections": "4.0.11",
-          "System.IO": "4.1.0",
-          "System.IO.FileSystem": "4.0.1",
-          "System.Reflection.TypeExtensions": "4.1.0",
-          "System.Runtime.Extensions": "4.1.0",
-          "System.Runtime.InteropServices": "4.1.0",
-          "System.Runtime.InteropServices.RuntimeInformation": "4.0.0"
-        },
-        "compile": {
-          "lib/netstandard1.3/Microsoft.DotNet.PlatformAbstractions.dll": {}
-        },
-        "runtime": {
-          "lib/netstandard1.3/Microsoft.DotNet.PlatformAbstractions.dll": {}
-        }
-      },
-      "Microsoft.Extensions.Configuration/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.Configuration.Abstractions": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.Configuration.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.Configuration.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.Configuration.Abstractions/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.Primitives": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.Configuration.Abstractions.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.Configuration.Abstractions.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.Configuration.Binder/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.Configuration": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.Configuration.Binder.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.Configuration.Binder.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.Configuration.EnvironmentVariables/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.Configuration": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.Configuration.EnvironmentVariables.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.Configuration.EnvironmentVariables.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.Configuration.FileExtensions/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.Configuration": "2.1.0",
-          "Microsoft.Extensions.FileProviders.Physical": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.Configuration.FileExtensions.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.Configuration.FileExtensions.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.DependencyInjection/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.DependencyInjection.Abstractions": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.DependencyInjection.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.DependencyInjection.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.DependencyInjection.Abstractions/2.1.0": {
-        "type": "package",
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.DependencyInjection.Abstractions.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.DependencyInjection.Abstractions.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.DependencyModel/2.0.4": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.DotNet.PlatformAbstractions": "2.0.4",
-          "Newtonsoft.Json": "9.0.1",
-          "System.Diagnostics.Debug": "4.0.11",
-          "System.Dynamic.Runtime": "4.0.11",
-          "System.Linq": "4.1.0"
-        },
-        "compile": {
-          "lib/netstandard1.6/Microsoft.Extensions.DependencyModel.dll": {}
-        },
-        "runtime": {
-          "lib/netstandard1.6/Microsoft.Extensions.DependencyModel.dll": {}
-        }
-      },
-      "Microsoft.Extensions.FileProviders.Abstractions/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.Primitives": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.FileProviders.Abstractions.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.FileProviders.Abstractions.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.FileProviders.Physical/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.FileProviders.Abstractions": "2.1.0",
-          "Microsoft.Extensions.FileSystemGlobbing": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.FileProviders.Physical.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.FileProviders.Physical.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.FileSystemGlobbing/2.1.0": {
-        "type": "package",
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.FileSystemGlobbing.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.FileSystemGlobbing.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.Hosting.Abstractions/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.Configuration.Abstractions": "2.1.0",
-          "Microsoft.Extensions.DependencyInjection.Abstractions": "2.1.0",
-          "Microsoft.Extensions.FileProviders.Abstractions": "2.1.0",
-          "Microsoft.Extensions.Logging.Abstractions": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.Hosting.Abstractions.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.Hosting.Abstractions.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.Logging/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.Configuration.Binder": "2.1.0",
-          "Microsoft.Extensions.DependencyInjection.Abstractions": "2.1.0",
-          "Microsoft.Extensions.Logging.Abstractions": "2.1.0",
-          "Microsoft.Extensions.Options": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.Logging.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.Logging.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.Logging.Abstractions/2.1.0": {
-        "type": "package",
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.Logging.Abstractions.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.Logging.Abstractions.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.ObjectPool/2.1.0": {
-        "type": "package",
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.ObjectPool.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.ObjectPool.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.Options/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.DependencyInjection.Abstractions": "2.1.0",
-          "Microsoft.Extensions.Primitives": "2.1.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.Options.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.Options.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.Options.ConfigurationExtensions/2.0.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.Configuration.Abstractions": "2.0.0",
-          "Microsoft.Extensions.Configuration.Binder": "2.0.0",
-          "Microsoft.Extensions.DependencyInjection.Abstractions": "2.0.0",
-          "Microsoft.Extensions.Options": "2.0.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.Options.ConfigurationExtensions.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.Options.ConfigurationExtensions.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Extensions.Primitives/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "System.Memory": "4.5.0",
-          "System.Runtime.CompilerServices.Unsafe": "4.5.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Extensions.Primitives.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Extensions.Primitives.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.Net.Http.Headers/2.1.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.Primitives": "2.1.0",
-          "System.Buffers": "4.5.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Microsoft.Net.Http.Headers.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Microsoft.Net.Http.Headers.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Microsoft.NETCore.Platforms/1.1.0": {
-        "type": "package",
-        "compile": {
-          "lib/netstandard1.0/_._": {}
-        },
-        "runtime": {
-          "lib/netstandard1.0/_._": {}
-        }
-      },
-      "Microsoft.NETCore.Targets/1.1.0": {
-        "type": "package",
-        "compile": {
-          "lib/netstandard1.0/_._": {}
-        },
-        "runtime": {
-          "lib/netstandard1.0/_._": {}
-        }
-      },
-      "NETStandard.Library/2.0.3": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.NETCore.Platforms": "1.1.0"
-        },
-        "compile": {
-          "lib/netstandard1.0/_._": {}
-        },
-        "runtime": {
-          "lib/netstandard1.0/_._": {}
-        },
-        "build": {
-          "build/netstandard2.0/NETStandard.Library.targets": {}
-        }
-      },
-      "Newtonsoft.Json/12.0.3": {
-        "type": "package",
-        "compile": {
-          "lib/netstandard2.0/Newtonsoft.Json.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Newtonsoft.Json.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "runtime.native.System/4.0.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.NETCore.Platforms": "1.0.1",
-          "Microsoft.NETCore.Targets": "1.0.1"
-        },
-        "compile": {
-          "lib/netstandard1.0/_._": {}
-        },
-        "runtime": {
-          "lib/netstandard1.0/_._": {}
-        }
-      },
-      "Serilog/2.6.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.CSharp": "4.0.1",
-          "System.Collections": "4.0.11",
-          "System.Collections.NonGeneric": "4.0.1",
-          "System.Dynamic.Runtime": "4.0.11",
-          "System.Globalization": "4.0.11",
-          "System.Linq": "4.1.0",
-          "System.Reflection": "4.1.0",
-          "System.Reflection.Extensions": "4.0.1",
-          "System.Runtime": "4.1.0",
-          "System.Runtime.Extensions": "4.1.0",
-          "System.Text.RegularExpressions": "4.1.0",
-          "System.Threading": "4.0.11"
-        },
-        "compile": {
-          "lib/netstandard1.3/Serilog.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard1.3/Serilog.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Serilog.AspNetCore/2.1.1": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.AspNetCore.Hosting.Abstractions": "2.0.0",
-          "Microsoft.Extensions.DependencyInjection": "2.0.0",
-          "Microsoft.Extensions.Logging": "2.0.0",
-          "Serilog": "2.5.0",
-          "Serilog.Extensions.Logging": "2.0.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Serilog.AspNetCore.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Serilog.AspNetCore.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Serilog.Extensions.Logging/2.0.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Extensions.Logging": "2.0.0",
-          "Serilog": "2.3.0"
-        },
-        "compile": {
-          "lib/netstandard2.0/Serilog.Extensions.Logging.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Serilog.Extensions.Logging.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Serilog.Formatting.Compact/1.0.0": {
-        "type": "package",
-        "dependencies": {
-          "Serilog": "2.0.0"
-        },
-        "compile": {
-          "lib/netstandard1.1/Serilog.Formatting.Compact.dll": {
-            "related": ".xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard1.1/Serilog.Formatting.Compact.dll": {
-            "related": ".xml"
-          }
-        }
-      },
-      "Serilog.Settings.Configuration/3.0.1": {
-        "type": "package",
-        "dependencies": {
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diff --git a/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/project.nuget.cache b/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/project.nuget.cache
deleted file mode 100644
index 49838e64d..000000000
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-    "/Users/assafa/.nuget/packages/microsoft.extensions.dependencymodel/2.0.4/microsoft.extensions.dependencymodel.2.0.4.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/microsoft.extensions.fileproviders.abstractions/2.1.0/microsoft.extensions.fileproviders.abstractions.2.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/microsoft.extensions.fileproviders.physical/2.1.0/microsoft.extensions.fileproviders.physical.2.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/microsoft.extensions.filesystemglobbing/2.1.0/microsoft.extensions.filesystemglobbing.2.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/microsoft.extensions.hosting.abstractions/2.1.0/microsoft.extensions.hosting.abstractions.2.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/microsoft.extensions.logging/2.1.0/microsoft.extensions.logging.2.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/microsoft.extensions.logging.abstractions/2.1.0/microsoft.extensions.logging.abstractions.2.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/microsoft.extensions.objectpool/2.1.0/microsoft.extensions.objectpool.2.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/microsoft.extensions.options/2.1.0/microsoft.extensions.options.2.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/microsoft.extensions.options.configurationextensions/2.0.0/microsoft.extensions.options.configurationextensions.2.0.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/microsoft.extensions.primitives/2.1.0/microsoft.extensions.primitives.2.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/microsoft.net.http.headers/2.1.0/microsoft.net.http.headers.2.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/microsoft.netcore.platforms/1.1.0/microsoft.netcore.platforms.1.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/microsoft.netcore.targets/1.1.0/microsoft.netcore.targets.1.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/netstandard.library/2.0.3/netstandard.library.2.0.3.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/newtonsoft.json/12.0.3/newtonsoft.json.12.0.3.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/runtime.native.system/4.0.0/runtime.native.system.4.0.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/serilog/2.6.0/serilog.2.6.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/serilog.aspnetcore/2.1.1/serilog.aspnetcore.2.1.1.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/serilog.extensions.logging/2.0.0/serilog.extensions.logging.2.0.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/serilog.formatting.compact/1.0.0/serilog.formatting.compact.1.0.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/serilog.settings.configuration/3.0.1/serilog.settings.configuration.3.0.1.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/serilog.sinks.console/3.1.1/serilog.sinks.console.3.1.1.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/serilog.sinks.eventlog/3.1.0/serilog.sinks.eventlog.3.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/serilog.sinks.file/4.0.0/serilog.sinks.file.4.0.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.appcontext/4.1.0/system.appcontext.4.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.buffers/4.5.0/system.buffers.4.5.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.collections/4.0.11/system.collections.4.0.11.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.collections.immutable/1.5.0/system.collections.immutable.1.5.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.collections.nongeneric/4.0.1/system.collections.nongeneric.4.0.1.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.console/4.3.0/system.console.4.3.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.diagnostics.debug/4.0.11/system.diagnostics.debug.4.0.11.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.diagnostics.diagnosticsource/4.5.0/system.diagnostics.diagnosticsource.4.5.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.diagnostics.eventlog/4.5.0/system.diagnostics.eventlog.4.5.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.dynamic.runtime/4.0.11/system.dynamic.runtime.4.0.11.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.globalization/4.0.11/system.globalization.4.0.11.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.io/4.3.0/system.io.4.3.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.io.filesystem/4.0.1/system.io.filesystem.4.0.1.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.io.filesystem.accesscontrol/4.7.0/system.io.filesystem.accesscontrol.4.7.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.io.filesystem.primitives/4.0.1/system.io.filesystem.primitives.4.0.1.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.linq/4.1.0/system.linq.4.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.linq.expressions/4.1.0/system.linq.expressions.4.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.memory/4.5.3/system.memory.4.5.3.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.numerics.vectors/4.4.0/system.numerics.vectors.4.4.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.objectmodel/4.0.12/system.objectmodel.4.0.12.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.reflection/4.1.0/system.reflection.4.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.reflection.emit/4.0.1/system.reflection.emit.4.0.1.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.reflection.emit.ilgeneration/4.0.1/system.reflection.emit.ilgeneration.4.0.1.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.reflection.emit.lightweight/4.0.1/system.reflection.emit.lightweight.4.0.1.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.reflection.extensions/4.0.1/system.reflection.extensions.4.0.1.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.reflection.metadata/1.6.0/system.reflection.metadata.1.6.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.reflection.primitives/4.0.1/system.reflection.primitives.4.0.1.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.reflection.typeextensions/4.1.0/system.reflection.typeextensions.4.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.resources.resourcemanager/4.0.1/system.resources.resourcemanager.4.0.1.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.runtime/4.3.0/system.runtime.4.3.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.runtime.compilerservices.unsafe/4.5.2/system.runtime.compilerservices.unsafe.4.5.2.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.runtime.extensions/4.1.0/system.runtime.extensions.4.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.runtime.handles/4.0.1/system.runtime.handles.4.0.1.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.runtime.interopservices/4.1.0/system.runtime.interopservices.4.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.runtime.interopservices.runtimeinformation/4.0.0/system.runtime.interopservices.runtimeinformation.4.0.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.security.accesscontrol/4.7.0/system.security.accesscontrol.4.7.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.security.permissions/4.5.0/system.security.permissions.4.5.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.security.principal.windows/4.7.0/system.security.principal.windows.4.7.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.text.encoding/4.3.0/system.text.encoding.4.3.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.text.encoding.extensions/4.0.11/system.text.encoding.extensions.4.0.11.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.text.encodings.web/4.5.0/system.text.encodings.web.4.5.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.text.regularexpressions/4.1.0/system.text.regularexpressions.4.1.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.threading/4.0.11/system.threading.4.0.11.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.threading.tasks/4.3.0/system.threading.tasks.4.3.0.nupkg.sha512",
-    "/Users/assafa/.nuget/packages/system.threading.timer/4.0.1/system.threading.timer.4.0.1.nupkg.sha512"
-  ],
-  "logs": [
-    {
-      "code": "NU1903",
-      "level": "Warning",
-      "warningLevel": 1,
-      "message": "Package 'Newtonsoft.Json' 12.0.3 has a known high severity vulnerability, https://github.com/advisories/GHSA-5crp-9r3c-p9vr",
-      "libraryId": "Newtonsoft.Json",
-      "targetGraphs": [
-        ".NETStandard,Version=v2.0"
-      ]
-    }
-  ]
-}
\ No newline at end of file
diff --git a/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/TestApp1.csproj.nuget.dgspec.json b/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/TestApp1.csproj.nuget.dgspec.json
deleted file mode 100644
index d71a12707..000000000
--- a/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/TestApp1.csproj.nuget.dgspec.json
+++ /dev/null
@@ -1,226 +0,0 @@
-{
-  "format": 1,
-  "restore": {
-    "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/TestApp1/TestApp1.csproj": {}
-  },
-  "projects": {
-    "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/ClassLibrary1.csproj": {
-      "version": "1.0.0",
-      "restore": {
-        "projectUniqueName": "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/ClassLibrary1.csproj",
-        "projectName": "ClassLibrary1",
-        "projectPath": "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/ClassLibrary1.csproj",
-        "packagesPath": "/Users/assafa/.nuget/packages/",
-        "outputPath": "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/obj/",
-        "projectStyle": "PackageReference",
-        "configFilePaths": [
-          "/Users/assafa/.nuget/NuGet/NuGet.Config"
-        ],
-        "originalTargetFrameworks": [
-          "netstandard2.0"
-        ],
-        "sources": {
-          "https://api.nuget.org/v3/index.json": {}
-        },
-        "frameworks": {
-          "netstandard2.0": {
-            "targetAlias": "netstandard2.0",
-            "projectReferences": {}
-          }
-        },
-        "warningProperties": {
-          "warnAsError": [
-            "NU1605"
-          ]
-        },
-        "restoreAuditProperties": {
-          "enableAudit": "true",
-          "auditLevel": "low",
-          "auditMode": "direct"
-        }
-      },
-      "frameworks": {
-        "netstandard2.0": {
-          "targetAlias": "netstandard2.0",
-          "dependencies": {
-            "Microsoft.AspNetCore.Hosting": {
-              "target": "Package",
-              "version": "[2.1.0, )"
-            },
-            "NETStandard.Library": {
-              "suppressParent": "All",
-              "target": "Package",
-              "version": "[2.0.3, )",
-              "autoReferenced": true
-            },
-            "Newtonsoft.Json": {
-              "target": "Package",
-              "version": "[12.0.3, )"
-            },
-            "Serilog.AspNetCore": {
-              "target": "Package",
-              "version": "[2.1.1, )"
-            },
-            "Serilog.Formatting.Compact": {
-              "target": "Package",
-              "version": "[1.0.0, )"
-            },
-            "Serilog.Settings.Configuration": {
-              "target": "Package",
-              "version": "[3.0.1, )"
-            },
-            "Serilog.Sinks.Console": {
-              "target": "Package",
-              "version": "[3.1.1, )"
-            },
-            "Serilog.Sinks.EventLog": {
-              "target": "Package",
-              "version": "[3.1.0, )"
-            },
-            "Serilog.Sinks.File": {
-              "target": "Package",
-              "version": "[4.0.0, )"
-            },
-            "System.IO.FileSystem.AccessControl": {
-              "target": "Package",
-              "version": "[4.7.0, )"
-            }
-          },
-          "imports": [
-            "net461",
-            "net462",
-            "net47",
-            "net471",
-            "net472",
-            "net48",
-            "net481"
-          ],
-          "assetTargetFallback": true,
-          "warn": true,
-          "runtimeIdentifierGraphPath": "/Users/assafa/.dotnet/sdk/8.0.418/RuntimeIdentifierGraph.json"
-        }
-      }
-    },
-    "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/TestApp1/TestApp1.csproj": {
-      "version": "1.0.0",
-      "restore": {
-        "projectUniqueName": "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/TestApp1/TestApp1.csproj",
-        "projectName": "TestApp1",
-        "projectPath": "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/TestApp1/TestApp1.csproj",
-        "packagesPath": "/Users/assafa/.nuget/packages/",
-        "outputPath": "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/",
-        "projectStyle": "PackageReference",
-        "configFilePaths": [
-          "/Users/assafa/.nuget/NuGet/NuGet.Config"
-        ],
-        "originalTargetFrameworks": [
-          "netcoreapp3.1"
-        ],
-        "sources": {
-          "https://api.nuget.org/v3/index.json": {}
-        },
-        "frameworks": {
-          "netcoreapp3.1": {
-            "targetAlias": "netcoreapp3.1",
-            "projectReferences": {
-              "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/ClassLibrary1.csproj": {
-                "projectPath": "/Users/assafa/code/jfrog/jfrog-cli-security/tests/testdata/projects/package-managers/nuget/multi/ClassLibrary1/ClassLibrary1.csproj"
-              }
-            }
-          }
-        },
-        "warningProperties": {
-          "warnAsError": [
-            "NU1605"
-          ]
-        },
-        "restoreAuditProperties": {
-          "enableAudit": "true",
-          "auditLevel": "low",
-          "auditMode": "direct"
-        }
-      },
-      "frameworks": {
-        "netcoreapp3.1": {
-          "targetAlias": "netcoreapp3.1",
-          "dependencies": {
-            "BouncyCastle": {
-              "target": "Package",
-              "version": "[1.8.9, )"
-            },
-            "Google.Cloud.Kms.V1": {
-              "target": "Package",
-              "version": "[2.0.0, )"
-            },
-            "Microsoft.AspNetCore.Hosting": {
-              "target": "Package",
-              "version": "[2.1.1, )"
-            },
-            "Microsoft.AspNetCore.Hosting.WindowsServices": {
-              "target": "Package",
-              "version": "[2.1.1, )"
-            },
-            "Serilog.AspNetCore": {
-              "target": "Package",
-              "version": "[2.1.1, )"
-            },
-            "Serilog.Formatting.Compact": {
-              "target": "Package",
-              "version": "[1.0.0, )"
-            },
-            "Serilog.Settings.Configuration": {
-              "target": "Package",
-              "version": "[3.0.1, )"
-            },
-            "Serilog.Sinks.Console": {
-              "target": "Package",
-              "version": "[3.1.1, )"
-            },
-            "Serilog.Sinks.EventLog": {
-              "target": "Package",
-              "version": "[3.1.0, )"
-            },
-            "Serilog.Sinks.File": {
-              "target": "Package",
-              "version": "[4.0.0, )"
-            }
-          },
-          "imports": [
-            "net461",
-            "net462",
-            "net47",
-            "net471",
-            "net472",
-            "net48",
-            "net481"
-          ],
-          "assetTargetFallback": true,
-          "warn": true,
-          "downloadDependencies": [
-            {
-              "name": "Microsoft.AspNetCore.App.Ref",
-              "version": "[3.1.10, 3.1.10]"
-            },
-            {
-              "name": "Microsoft.NETCore.App.Host.osx-x64",
-              "version": "[3.1.32, 3.1.32]"
-            },
-            {
-              "name": "Microsoft.NETCore.App.Ref",
-              "version": "[3.1.0, 3.1.0]"
-            }
-          ],
-          "frameworkReferences": {
-            "Microsoft.AspNetCore.App": {
-              "privateAssets": "none"
-            },
-            "Microsoft.NETCore.App": {
-              "privateAssets": "all"
-            }
-          },
-          "runtimeIdentifierGraphPath": "/Users/assafa/.dotnet/sdk/8.0.418/RuntimeIdentifierGraph.json"
-        }
-      }
-    }
-  }
-}
\ No newline at end of file
diff --git a/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/TestApp1.csproj.nuget.g.props b/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/TestApp1.csproj.nuget.g.props
deleted file mode 100644
index d8e90e26e..000000000
--- a/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/TestApp1.csproj.nuget.g.props
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="utf-8" standalone="no"?>
-<Project ToolsVersion="14.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
-  <PropertyGroup Condition=" '$(ExcludeRestorePackageImports)' != 'true' ">
-    <RestoreSuccess Condition=" '$(RestoreSuccess)' == '' ">True</RestoreSuccess>
-    <RestoreTool Condition=" '$(RestoreTool)' == '' ">NuGet</RestoreTool>
-    <ProjectAssetsFile Condition=" '$(ProjectAssetsFile)' == '' ">$(MSBuildThisFileDirectory)project.assets.json</ProjectAssetsFile>
-    <NuGetPackageRoot Condition=" '$(NuGetPackageRoot)' == '' ">/Users/assafa/.nuget/packages/</NuGetPackageRoot>
-    <NuGetPackageFolders Condition=" '$(NuGetPackageFolders)' == '' ">/Users/assafa/.nuget/packages/</NuGetPackageFolders>
-    <NuGetProjectStyle Condition=" '$(NuGetProjectStyle)' == '' ">PackageReference</NuGetProjectStyle>
-    <NuGetToolVersion Condition=" '$(NuGetToolVersion)' == '' ">6.11.1</NuGetToolVersion>
-  </PropertyGroup>
-  <ItemGroup Condition=" '$(ExcludeRestorePackageImports)' != 'true' ">
-    <SourceRoot Include="/Users/assafa/.nuget/packages/" />
-  </ItemGroup>
-</Project>
\ No newline at end of file
diff --git a/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/TestApp1.csproj.nuget.g.targets b/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/TestApp1.csproj.nuget.g.targets
deleted file mode 100644
index 3dc06ef3c..000000000
--- a/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/TestApp1.csproj.nuget.g.targets
+++ /dev/null
@@ -1,2 +0,0 @@
-<?xml version="1.0" encoding="utf-8" standalone="no"?>
-<Project ToolsVersion="14.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003" />
\ No newline at end of file
diff --git a/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/project.assets.json b/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/project.assets.json
deleted file mode 100644
index 411de6567..000000000
--- a/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/project.assets.json
+++ /dev/null
@@ -1,5324 +0,0 @@
-{
-  "version": 3,
-  "targets": {
-    ".NETCoreApp,Version=v3.1": {
-      "BouncyCastle/1.8.9": {
-        "type": "package",
-        "compile": {
-          "lib/BouncyCastle.Crypto.dll": {}
-        },
-        "runtime": {
-          "lib/BouncyCastle.Crypto.dll": {}
-        }
-      },
-      "Google.Api.CommonProtos/2.0.0": {
-        "type": "package",
-        "dependencies": {
-          "Google.Protobuf": "3.11.4"
-        },
-        "compile": {
-          "lib/netstandard2.0/Google.Api.CommonProtos.dll": {
-            "related": ".pdb;.xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Google.Api.CommonProtos.dll": {
-            "related": ".pdb;.xml"
-          }
-        }
-      },
-      "Google.Api.Gax/3.0.0": {
-        "type": "package",
-        "dependencies": {
-          "Microsoft.Bcl.AsyncInterfaces": "1.0.0",
-          "Newtonsoft.Json": "12.0.3"
-        },
-        "compile": {
-          "lib/netstandard2.0/Google.Api.Gax.dll": {
-            "related": ".pdb;.xml"
-          }
-        },
-        "runtime": {
-          "lib/netstandard2.0/Google.Api.Gax.dll": {
-            "related": ".pdb;.xml"
-          }
-        }
-      },
-      "Google.Api.Gax.Grpc/3.0.0": {
-        "type": "package",
-        "dependencies": {
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diff --git a/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/project.nuget.cache b/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/project.nuget.cache
deleted file mode 100644
index ee2f9b7b7..000000000
--- a/tests/testdata/projects/package-managers/nuget/multi/TestApp1/obj/project.nuget.cache
+++ /dev/null
@@ -1,156 +0,0 @@
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\ No newline at end of file