From 9ae3455974fa8bf9488e60503992844fccc962cc Mon Sep 17 00:00:00 2001 From: viv3ckj Date: Fri, 12 Jun 2026 13:24:05 +0100 Subject: [PATCH 1/2] Increase anymed time period to May 2026 --- analysis/dataset_definition_med_status_data_development.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/analysis/dataset_definition_med_status_data_development.py b/analysis/dataset_definition_med_status_data_development.py index 9ae9f7f..51fbc61 100644 --- a/analysis/dataset_definition_med_status_data_development.py +++ b/analysis/dataset_definition_med_status_data_development.py @@ -89,7 +89,7 @@ # Post launch, any medication selected_medications_any_post = medications.where( medications.date.is_on_or_between( - pharmacy_first_launch_date, pharmacy_first_launch_date + time_interval + pharmacy_first_launch_date, pharmacy_first_launch_date + pf_period ) ).sort_by(medications.date) From bfad7d15fd8832810eb461b3d444bdb9b9d5039f Mon Sep 17 00:00:00 2001 From: viv3ckj Date: Fri, 12 Jun 2026 13:55:40 +0100 Subject: [PATCH 2/2] Comment out excess script --- project.yaml | 64 ++++++++++++++++++++++++++-------------------------- 1 file changed, 32 insertions(+), 32 deletions(-) diff --git a/project.yaml b/project.yaml index cb6d362..ab02fbc 100644 --- a/project.yaml +++ b/project.yaml @@ -5,14 +5,14 @@ expectations: population_size: 1000 actions: - generate_pf_codes_data_development: - run: > - ehrql:v1 generate-dataset analysis/dataset_definition_pf_data_development.py - --test-data-file analysis/test_dataset_definition_pf_data_development.py - --output output/data_development/pf_codes_data_development.arrow - outputs: - highly_sensitive: - dataset: output/data_development/pf_codes_data_development.arrow + # generate_pf_codes_data_development: + # run: > + # ehrql:v1 generate-dataset analysis/dataset_definition_pf_data_development.py + # --test-data-file analysis/test_dataset_definition_pf_data_development.py + # --output output/data_development/pf_codes_data_development.arrow + # outputs: + # highly_sensitive: + # dataset: output/data_development/pf_codes_data_development.arrow generate_med_status_data_development: run: > @@ -51,33 +51,33 @@ actions: moderately_sensitive: dataset: output/data_development/med_status_counts.csv - data_development_pf_code_distinct: - run: r:latest analysis/data_development_pf_code_count_distinct.R - needs: [generate_pf_codes_data_development] - outputs: - moderately_sensitive: - dataset: output/data_development/pf_codes_count_distinct.csv + # data_development_pf_code_distinct: + # run: r:latest analysis/data_development_pf_code_count_distinct.R + # needs: [generate_pf_codes_data_development] + # outputs: + # moderately_sensitive: + # dataset: output/data_development/pf_codes_count_distinct.csv - data_development_pf_code_events: - run: r:latest analysis/data_development_pf_code_count_events.R - needs: [generate_pf_codes_data_development] - outputs: - moderately_sensitive: - dataset: output/data_development/pf_codes_count_events.csv + # data_development_pf_code_events: + # run: r:latest analysis/data_development_pf_code_count_events.R + # needs: [generate_pf_codes_data_development] + # outputs: + # moderately_sensitive: + # dataset: output/data_development/pf_codes_count_events.csv - data_development_pf_codes_pathways: - run: r:latest analysis/data_development_pf_code_count_pathways.R - needs: [generate_pf_codes_data_development] - outputs: - moderately_sensitive: - dataset: output/data_development/pf_codes_count_pathways.csv + # data_development_pf_codes_pathways: + # run: r:latest analysis/data_development_pf_code_count_pathways.R + # needs: [generate_pf_codes_data_development] + # outputs: + # moderately_sensitive: + # dataset: output/data_development/pf_codes_count_pathways.csv - data_development_pf_codes_combine: - run: r:latest analysis/data_development_pf_code_count_combine.R - needs: [data_development_pf_code_distinct, data_development_pf_code_events, data_development_pf_codes_pathways] - outputs: - moderately_sensitive: - dataset: output/data_development/pf_codes_count_summary.csv + # data_development_pf_codes_combine: + # run: r:latest analysis/data_development_pf_code_count_combine.R + # needs: [data_development_pf_code_distinct, data_development_pf_code_events, data_development_pf_codes_pathways] + # outputs: + # moderately_sensitive: + # dataset: output/data_development/pf_codes_count_summary.csv generate_pf_med_counts_measures: run: >