From 4b7a1011c3354a318ddd1ad7efb04ffd264bcf9c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Irene=20L=C3=B3pez=20Santiago?=
 <45119610+ireneisdoomed@users.noreply.github.com>
Date: Wed, 28 Jan 2026 13:40:34 +0000
Subject: [PATCH 1/2] chore: update regex for phenotypeFromSourceId field

---
 pydantic_models/pharmacogenomics.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pydantic_models/pharmacogenomics.py b/pydantic_models/pharmacogenomics.py
index 6d7f0e6..68311e8 100644
--- a/pydantic_models/pharmacogenomics.py
+++ b/pydantic_models/pharmacogenomics.py
@@ -154,7 +154,7 @@ class Pharmacogenomics(BaseModel):
     phenotypeFromSourceId: Optional[str] = Field(
         description="EFO ID of phenotype, mapped through ZOOMA / OXO.",
         examples=["Orphanet_423"],
-        regex=r"^NCIT_C\d+$|^Orphanet_\d+$|^GO_\d+$|^HP_\d+$|^EFO_\d+$|^MONDO_\d+$|^DOID_\d+$|^MP_\d+$|^OTAR_\d+$|^PATO_\d+$|^CHEBI_\d+$|^OBI_\d+$|^OGMS_\d+$",
+        regex=r"(^NCIT_|^Orphanet_|^GO_|^HP_|^EFO_|^MONDO_|^DOID_|^MP_|^OTAR_|^PATO_|^OBI_|^OBA_|^OGMS_|^GSSO_|^UBERON_)",
     )
     variantAnnotation: Optional[List[VariantAnnotation]]
 

From 264e74b89bf91aacbb865555f712cd3650581b95 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Irene=20L=C3=B3pez=20Santiago?=
 <45119610+ireneisdoomed@users.noreply.github.com>
Date: Wed, 28 Jan 2026 13:41:23 +0000
Subject: [PATCH 2/2] update regex pattern for phenotypeFromSourceId

---
 schemas/pharmacogenomics.json | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/schemas/pharmacogenomics.json b/schemas/pharmacogenomics.json
index e6c2e25..b374152 100644
--- a/schemas/pharmacogenomics.json
+++ b/schemas/pharmacogenomics.json
@@ -166,7 +166,7 @@
     "phenotypeFromSourceId": {
       "title": "Phenotypefromsourceid",
       "description": "EFO ID of phenotype, mapped through ZOOMA / OXO.",
-      "pattern": "^NCIT_C\\d+$|^Orphanet_\\d+$|^GO_\\d+$|^HP_\\d+$|^EFO_\\d+$|^MONDO_\\d+$|^DOID_\\d+$|^MP_\\d+$|^OTAR_\\d+$|^PATO_\\d+$|^CHEBI_\\d+$|^OBI_\\d+$|^OGMS_\\d+$",
+      "pattern": "(^NCIT_|^Orphanet_|^GO_|^HP_|^EFO_|^MONDO_|^DOID_|^MP_|^OTAR_|^PATO_|^OBI_|^OBA_|^OGMS_|^GSSO_|^UBERON_)",
       "examples": [
         "Orphanet_423"
       ],