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BLR appears to still be running despite generation of MultiQC report

Status: Open.

#93 In AfshinLab/BLR;

· ajdesalvio opened on Jul 25, 2025

crashes after "checkpoint extract_barcodes"

Status: Open.

#92 In AfshinLab/BLR;

· IlinaMargo opened on Apr 17, 2025

Load R before submitting SLURM batch job (and other necessary modules)

Status: Open.

#83 In AfshinLab/BLR;

· ajdesalvio opened on Sep 26, 2024

Improve documentation

Status: Open.

#81 In AfshinLab/BLR;

· pontushojer opened on Nov 3, 2023

Detect sample sex from input

Status: Open.

#79 In AfshinLab/BLR;

· pontushojer opened on Oct 10, 2023

Automatically filter out barcodes with too many molecules

Status: Open.

#78 In AfshinLab/BLR;

· pontushojer opened on Oct 2, 2023

Add Haplotagging support

Status: Open.

#77 In AfshinLab/BLR;

· pontushojer opened on Oct 2, 2023

Re-call SNVs after phasing

Status: Open.

#76 In AfshinLab/BLR;

· pontushojer opened on Oct 2, 2023

Make use of molecule information in LinkFragments

Status: Open.

#75 In AfshinLab/BLR;

· pontushojer opened on Oct 2, 2023

Test phasing with HapTree-X

Status: Open.

#74 In AfshinLab/BLR;

· pontushojer opened on Oct 2, 2023

Rule map_sort sometimes fails for ema

Status: Open.

#73 In AfshinLab/BLR;

· pontushojer opened on Oct 2, 2023

Remove tagbam for DBS and TELL-seq when mapping with EMA

Status: Open.

#72 In AfshinLab/BLR;

· pontushojer opened on Oct 2, 2023