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Andersen Lab

Johns Hopkins University

40 followers
United States of America
https://www.andersenlab.org
erik.andersen@jhu.edu

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CAENDR CAENDR Public

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Showing 10 of 207 repositories

nemascan-nf Public
An updated NemaScan nextflow workflow for version 26+

AndersenLab/nemascan-nf’s past year of commit activity

Python 0 0 0 0 Updated Jul 6, 2026
andersenlab.github.io Public
Andersen Lab Website

AndersenLab/andersenlab.github.io’s past year of commit activity

HTML 2 MIT 3 0 2 Updated Jul 3, 2026
cv Public
Andersen Curriculum Vitae

AndersenLab/cv’s past year of commit activity

0 1 0 0 Updated Jul 3, 2026
CAENDR Public

AndersenLab/CAENDR’s past year of commit activity

HTML 4 MIT 3 0 9 Updated Jul 2, 2026
gtcheck-nf Public
Nextflow workflow for checking sample variants against known variants to verify identity

AndersenLab/gtcheck-nf’s past year of commit activity

Nextflow 0 MIT 0 0 0 Updated Jul 2, 2026
Ce_pangenome_MS Public
Scripts, data, figures, and tables for the C. elegans pangenome manuscript

AndersenLab/Ce_pangenome_MS’s past year of commit activity

R 0 0 0 0 Updated Jul 1, 2026
Ce_geneAnno-sh Public
This is a repository for storing all scripts related to genome assembly, gene annotation, SV calling, GFF/FA file manipulation, functional enrichment analysis, gene set visualization, and syntelog decompression.

AndersenLab/Ce_geneAnno-sh’s past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Jul 1, 2026
assembly-nf Public
Nextflow pipeline for hifiasm de novo assembly and sequencing quality control

AndersenLab/assembly-nf’s past year of commit activity

Nextflow 0 0 0 0 Updated Jun 27, 2026
NemaSize-nf Public

AndersenLab/NemaSize-nf’s past year of commit activity

Nextflow 0 0 0 0 Updated Jun 23, 2026
wi-gatk Public
The new GATK-based pipeline for wild isolate C. elegans strains

AndersenLab/wi-gatk’s past year of commit activity

Nextflow 1 3 6 0 Updated Jun 23, 2026

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