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  1. evo2 evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 3.9k 489

  2. state state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    Python 567 154

  3. arc-virtual-cell-atlas arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    Jupyter Notebook 516 52

  4. SRAgent SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    Python 166 33

  5. cell-eval cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    Python 126 44

  6. stack stack Public

    Stack is a single-cell foundation model that enables in-context learning at inference time.

    Jupyter Notebook 124 19

Repositories

Showing 10 of 36 repositories
  • Wizards-Staff Public

    Calcium imaging analysis pipeline of outputs from Lizard-Wizard for the Arc Institute.

    ArcInstitute/Wizards-Staff’s past year of commit activity
    Python 1 MIT 0 4 0 Updated Apr 30, 2026
  • stack Public

    Stack is a single-cell foundation model that enables in-context learning at inference time.

    ArcInstitute/stack’s past year of commit activity
    Jupyter Notebook 124 19 1 0 Updated Apr 28, 2026
  • cell-load Public

    pytorch dataloaders for single-cell perturbation data

    ArcInstitute/cell-load’s past year of commit activity
    Python 44 MIT 26 12 6 Updated Apr 24, 2026
  • state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    ArcInstitute/state’s past year of commit activity
    Python 567 154 32 (1 issue needs help) 23 Updated Apr 23, 2026
  • state-tpu Public Forked from ArcInstitute/state

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    ArcInstitute/state-tpu’s past year of commit activity
    Python 0 154 0 1 Updated Apr 21, 2026
  • fastapi Public Forked from fastapi/fastapi

    FastAPI framework, high performance, easy to learn, fast to code, ready for production

    ArcInstitute/fastapi’s past year of commit activity
    Python 0 MIT 9,545 0 1 Updated Apr 20, 2026
  • brain-agent-template Public template

    Template for autonomous self-evolving Claude Code brain agents

    ArcInstitute/brain-agent-template’s past year of commit activity
    1 0 0 0 Updated Apr 18, 2026
  • cyto Public

    A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries

    ArcInstitute/cyto’s past year of commit activity
    Rust 43 BSD-3-Clause 2 11 1 Updated Apr 15, 2026
  • pdex Public

    parallel differential expression for single-cell perturbation sequencing

    ArcInstitute/pdex’s past year of commit activity
    Python 25 MIT 10 3 2 Updated Apr 7, 2026
  • bqtools Public

    A command line utilty for working with BINSEQ files

    ArcInstitute/bqtools’s past year of commit activity
    Rust 38 3 8 0 Updated Mar 31, 2026

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