Skip extra qPCR files instead of failing them on reprocess

[wasimxyz]

Summary

• Azure Cielo writes extra CSVs and a report PDF next to the melting-curve and Cq Values files we actually parse.
• Reprocessing a run sent every raw file to Lambda. Files the processor did not claim were marked failed, so the run looked failed even when melting-curve processing worked.
• Lambda now accepts every .csv and .pdf on qPCR. It still parses melting curves and Cq Values. Extra CSVs and the report PDF are marked completed without parsing, so they cannot fail the run.

Test plan

• uv run pytest lambda/tests/azure_cielo_qpcr/test_process_file.py lambda/tests/test_processors.py
• After deploy, reprocess a qPCR run that has extra CSVs and a report PDF
• Amplification Values, Dye calibration, Post Processed Amp Values, and the report PDF show completed
• Melting-curve processing still writes the derivatives CSV and plate JSON
• Cq Values still writes dye-channel metadata
• A broken Cq Values file still fails

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Project	Deployment	Actions	Updated
data-hub	Ready	Preview	Sep 1, 2026 11:09pm UTC