Calcium-Imaging

This software takes in a .tiff file from calcium imaging mice. It also requires a .mat file of the running data. It will correct for motion in the movie, segment to find cells, and analysis on each active cell.

Name		Name	Last commit message	Last commit date
1_MotionCorrection		1_MotionCorrection
2_Segmentation		2_Segmentation
3_DataExtraction		3_DataExtraction
4_DataAnalysis		4_DataAnalysis
Analysis		Analysis
Ancillary_Files		Ancillary_Files
Test Files		Test Files
Fourier_Filter_1.m		Fourier_Filter_1.m
README.md		README.md
aRUNNER.m		aRUNNER.m
analyzeIntensityGUI_hold.m		analyzeIntensityGUI_hold.m
analyzeIntensityGUI_hold_CoV.m		analyzeIntensityGUI_hold_CoV.m
initialGUI.m		initialGUI.m
run_intensity_and_data_analysis.m		run_intensity_and_data_analysis.m
run_motion_correction.m		run_motion_correction.m
run_segmentation.m		run_segmentation.m

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