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Improve high-level example: list rendering, SOP note, diagram path #5

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668055e
fix measurements list not rendering in high-level example
sorenwacker Jul 21, 2026
51e7785
clarify SOP step is optional with link, and fix combined-study diagra…
sorenwacker Jul 21, 2026
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6 changes: 4 additions & 2 deletions docs/resilience-hub/seek/high-level-example.md
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Expand Up @@ -4,14 +4,16 @@
## Experimental design

2 varieties (col-0, ler) and 2 watering regimes (well watered, drought) -> 4 experimental groups.

Measurements:

- RNA-seq of root and and leaf samples
- Canopy coverage per experimental group
- Some general measurements from the greenhouse.

## Study general

Choose combined sequencing and phenotyping study. Add SOP with experimental design map for MIAPPE.
Choose combined sequencing and phenotyping study. Optionally, add an [SOP](../../getting-started/glossary.md) with the experimental design map for MIAPPE — this can also be added later.

## Study source

Expand All @@ -36,5 +38,5 @@ Create one sequencing assay stream. Describe the library construction and sequen

Create one phenotyping assay stream for the greenhouse sensors. Create an assay for the measurements of the output material with the template observation. Define one row per environment variable measured by the greenhouse sensors, describing the variable, the sensor and the scale. This can be one row for temperature and one for humidity. The input is the study observation unit greenhouse. Create a next assay in the stream for the data files, one row for each file, with as input the assay row defined in the previous assay. Describe the and link to the data.

![](../../docs/img/SEEKSchematicCombinedStudy.png)
![](../../img/SEEKSchematicCombinedStudy.png)