Backfill related_ingredients in 8 more communities (#30)#145
Merged
Conversation
Adds 34 CHEBI-grounded related_ingredients across 8 communities, strict no-fabrication protocol (OAK-verified canonical CHEBI labels; every snippet a verbatim substring of a reference already cited + cached in the file). - Clostridium_Carboxidivorans_Kluyveri_CO_Chain_Elongation_Coculture: 7 - Methylocystis_Rhodococcus_Methane_VFA_PHBV_Coculture: 7 (methane/O2, VFAs, PHBV [no clean CHEBI, preferred_term only]) - Lake_Washington_Methane_Oxygen_Methylotroph_Community: 8 (methane, methanol, formaldehyde, methylamine, pyruvate, nitrate) - Thiocyanate_Afipia_Thiobacillus_Bioreactor_Community: 4 (thiocyanate, cyanate, ammonia, CO2) - Acetylene_Fueled_TCE_Dechlorination_Groundwater_Enrichment: 3 - Variovorax_Cryptococcus_Vitamin_Mutualism_Microcosm: 2 (thiamine, pantothenate) - Trichoderma_Streptomyces_Filamentous_Cellulose_Coculture: 1 (cellulose) - Naica_Deep_Subsurface_Thermophilic: 2 (calcium sulfate, gypsum) Verified: 34/34 labels canonical, 35/35 snippets exact substrings, all 8 pass linkml-validate, additions-only. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Continues the #30
related_ingredientsbackfill — 34 CHEBI-grounded ingredients across 8 communities, strict no-fabrication protocol.Protocol (enforced + independently verified)
snippetis a verbatim contiguous substring of a cited+cached reference (full-text.mdpreferred) → 35/35 snippets exact.Validation
linkml-validateall 8 → exit 0Adoption: 173 → 181 / 265.
🤖 Generated with Claude Code