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Avoid slash in mounted paths #344

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Merged
daurer merged 1 commit into from
Aug 24, 2026
Merged

Avoid slash in mounted paths #344

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30 changes: 15 additions & 15 deletions i14/templates/xrf-tomo-template.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -66,7 +66,7 @@ spec:
image: debian:stable-slim
volumeMounts:
- name: session
mountPath: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}"
mountPath: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}"
command: [bash]
source: |
OUTPUT="{{`{{ workflow.parameters.visitdir }}`}}"/processing/workflows/"{{`{{ workflow.parameters.outputFolder }}`}}"
Expand All @@ -92,7 +92,7 @@ spec:
volumes:
- name: session
hostPath:
path: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}"
path: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}"
type: Directory

- name: xrf-tomo-stack-projections
Expand All @@ -104,7 +104,7 @@ spec:
image: ghcr.io/diamondlightsource/nxstacker:latest
volumeMounts:
- name: session
mountPath: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}"
mountPath: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}"
- name: tmp
mountPath: /tmp
env:
Expand Down Expand Up @@ -141,7 +141,7 @@ spec:
volumes:
- name: session
hostPath:
path: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}"
path: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}"
type: Directory

- name: xrf-tomo-copy-stacked-projections
Expand All @@ -153,7 +153,7 @@ spec:
image: debian:stable-slim
volumeMounts:
- name: session
mountPath: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}"
mountPath: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}"
- name: tmp
mountPath: /tmp
env:
Expand Down Expand Up @@ -186,7 +186,7 @@ spec:
volumes:
- name: session
hostPath:
path: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}"
path: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}"
type: Directory

- name: xrf-tomo-generate-shifts
Expand Down Expand Up @@ -223,14 +223,14 @@ spec:

volumeMounts:
- name: session
mountPath: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}"
mountPath: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}"
- name: tmp
mountPath: /tmp
outputs:
parameters:
- name: initcor
valueFrom:
path: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}/processing/workflows/{{`{{ workflow.parameters.outputFolder }}`}}/{{`{{ workflow.parameters.elementToAlign }}`}}-{{`{{ workflow.parameters.transitionToAlign }}`}}_cor.txt"
path: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}/processing/workflows/{{`{{ workflow.parameters.outputFolder }}`}}/{{`{{ workflow.parameters.elementToAlign }}`}}-{{`{{ workflow.parameters.transitionToAlign }}`}}_cor.txt"
artifacts:
- name: align_initial
path: "/tmp/align_initial.html"
Expand Down Expand Up @@ -268,7 +268,7 @@ spec:
volumes:
- name: session
hostPath:
path: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}"
path: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}"
type: Directory

- name: xrf-tomo-align-and-normalise
Expand Down Expand Up @@ -308,7 +308,7 @@ spec:

volumeMounts:
- name: session
mountPath: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}"
mountPath: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}"
- name: tmp
mountPath: /tmp
outputs:
Expand Down Expand Up @@ -345,7 +345,7 @@ spec:
volumes:
- name: session
hostPath:
path: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}"
path: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}"
type: Directory

- name: xrf-tomo-reconstruct
Expand Down Expand Up @@ -399,7 +399,7 @@ spec:

volumeMounts:
- name: session
mountPath: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}"
mountPath: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}"
- name: tmp
mountPath: /tmp
outputs:
Expand Down Expand Up @@ -434,7 +434,7 @@ spec:
volumes:
- name: session
hostPath:
path: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}"
path: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}"
type: Directory

- name: xrf-tomo-plotting
Expand Down Expand Up @@ -467,7 +467,7 @@ spec:

volumeMounts:
- name: session
mountPath: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}"
mountPath: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}"
- name: tmp
mountPath: /tmp
outputs:
Expand Down Expand Up @@ -516,7 +516,7 @@ spec:
volumes:
- name: session
hostPath:
path: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}"
path: "{{`{{ workflow.parameters.prefix }}`}}{{`{{ workflow.parameters.visitdir }}`}}"
type: Directory

- name: xrf-tomo-alignment-pipeline
Expand Down