Use an explict maskpath and use new container with ipython kernel

e02/schema/notebook_Schema.json

@@ -29,6 +29,13 @@
             "minimum": 0.05,
             "title": "The upper threshold",
             "type": "number"
+        },
+        "maskpath": {
+            "deafult": null,
+            "minlength": 0,
+            "maxlength": 100,
+            "title": "Mask path",
+            "type": "string"
         }
     },
     "title": "Calibration of 4D STEM data notebook"

e02/schema/notebook_ui.json

@@ -30,6 +30,11 @@
               "type": "Control",
               "label": "The upper threshold",
               "scope": "#/properties/thresh_upper"
+            },
+            {
+              "type": "Control",
+              "label": "The path to the mask, to be applied to the 4DSTEM data",
+              "scope": "#/properties/maskpath"
             }
           ]
         }

e02/templates/Notebook_simple.yaml

@@ -62,6 +62,8 @@ spec:
             value: "{{`{{workflow.parameters.sample}}`}}"
           - name: timestamp
             value: "{{`{{workflow.parameters.timestamp}}`}}"
+          - name: maskpath
+            value: "{{`{{workflow.parameters.maskpath}}`}}"
           - name: thresh_lower
             value: "{{`{{workflow.parameters.thresh_lower}}`}}"
           - name: thresh_upper
@@ -83,10 +85,10 @@ spec:
             -p visit "{{`{{ workflow.parameters.visitdir }}`}}" \
             -p sample "{{`{{ workflow.parameters.sample }}`}}" \
             -p timestamp "{{`{{workflow.parameters.timestamp}}`}}" \
-            -p maskpath "/home/ruska/29042024_12bitmask2.h5" \
+            -p maskpath "{{`{{workflow.parameters.maskpath}}`}}" \
             -p lower "{{`{{workflow.parameters.thresh_lower}}`}}" \
             -p upper "{{`{{workflow.parameters.thresh_upper}}`}}" \
-            > $OUTPUT/papermill.log 2>&1
+            > $OUTPUT/papermill.log 2>&1 -k python3
 
           python  -m jupyter nbconvert $OUTPUT/Calibrate-notebook.ipynb \
             --to html