Atlas 0.3: faster scans, deeper links, and scalable viewer

[Shahinyanm]

What changed

• index graph queries and cache deterministic viewer scenes
• make pan and zoom update the SVG directly instead of rerendering the full application per pointer event
• add incremental file manifests, warm graph reuse, bounded parallel hashing, and concurrent analyzers
• resolve NestJS DI tokens, factory providers, dynamic modules, forwardRef, CQRS, KafkaJS, and in-process events with evidence metadata
• add optional local runtime tracing and idempotent merge-runtime evidence merging
• add viewport culling, adaptive card detail, bounded edge animation, hard scene safety limits, and paged catalogs
• document the new workflows and bump the package to 0.3.0

Safety and privacy

• runtime tracing is opt-in and local
• request/message payloads, headers, environment values, and secrets are not recorded
• .env values remain excluded
• --no-cache forces a complete scan whenever required

Verification

• expanded architecture fixture for DI tokens, provider factories, CQRS, KafkaJS, and EventEmitter flows
• added runtime merge tests and idempotency coverage
• added warm-scan and 20k-node/50k-edge query benchmarks
• added large-scene LOD, culling, animation, and catalog paging tests
• CI runs the complete check on Ubuntu, Windows, and macOS