Version 1.0.5: helper functions for AutoSpectral

Version 1.0.5 provides new C++ functions to speed up the autofluorescence assignments when get.af.spectra() is called in AutoSpectral, and also to estimate 2D density for gating.

Version 1.0.3: Complete C++ integration

In version 1.0.3, all C++ steps have been integrated into a single pipeline, so the code no longer bounces back and forth between R and C++. This and a few other tweaks should cut the processing time to about 60% of what it was in v1.0.1. Memory usage will be reduced, which will help for larger files. Previous function calls for specific steps have been left as exports.

Version 1.0.1: Faster unmixing

More complete integration of the autofluorescence unmixing into C++. Speed for this operation is now close enough to basic OLS unmixing that it is largely irrelevant compared to FCS file handling in R for moderately large files (say half a million events).

Version 1.0.0

Faster unmixing using scoring to pre-screen autofluorescence and fluorophore variation per cell. Version 1.0.0 of AutoSpectralRcpp is compatible with Version 1.0.0 of AutoSpectral.