Enable prepacking of Compara intraspecies alignment summary - #110
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twalsh-ebi wants to merge 1 commit into
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Enable prepacking of Compara intraspecies alignment summary#110twalsh-ebi wants to merge 1 commit into
twalsh-ebi wants to merge 1 commit into
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twalsh-ebi
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July 14, 2026 09:11
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Description
This pull request would add script
prepack-intraspecies-alignments.plto enable pre-packing of Ensembl Plants intraspecies alignment data to a JSON file.It would also add 3 methods to
ConfigPacker:_find_intra_species_alignments_json_file: to find the intraspecies alignments JSON file in a designated location in theconf/directory;_load_intra_species_alignments_from_json: to load intraspecies alignments from a JSON file if that JSON file is present;_summarise_compara_alignments: to call the standard method for packing intraspecies alignment data if the intraspecies alignments JSON file is not present.In this way, it would be possible to prepack intraspecies alignment data and load the prepacked data during generation of the Plants
MULTI.db.packedfile.See also