Skip to content

fix: apt-get update before installing openbabel in Dockerfile-prep #23

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
tdudgeon merged 1 commit into from
Aug 5, 2026
Merged

fix: apt-get update before installing openbabel in Dockerfile-prep #23

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 5 additions & 1 deletion Dockerfile-prep
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,11 @@ FROM informaticsmatters/vs-rdkit-base:latest

# openbabel does not install easily with PIP, and we don't have conda so we must use apt to install.
# this installs version 3.1.1
RUN apt-get -y install openbabel python3-openbabel &&\
# apt-get update is required here (rather than relying on the base image's
# package index) because the bullseye-security mirror periodically prunes
# superseded point-release .debs, leaving a stale index full of 404s.
RUN apt-get -y update &&\
apt-get -y install openbabel python3-openbabel &&\
apt-get clean

ENV PYTHONPATH=/code
Expand Down
Loading