Feat/faithful mcdonald age#15

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JamesKane merged 13 commits into

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feat/faithful-mcdonald-age

Jul 1, 2026

Commits on Jun 29, 2026

feat(age): FTDNA STR import, per-branch STR ASR, causality + sparse-node fixes

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feat(age): faithful McDonald 2021 implementation (Eq 7/8 build + P1–P5)

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feat(age): per-sample tester Poisson (region-consistent coverage)

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Commits on Jul 1, 2026

fix(age): count only SNPs in the Poisson clock, exclude indels

JamesKane
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docs(denovo): note engine now excludes indels from the SNP clock

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fix(web): clear inverted-block reverse-complement display artifacts

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fix(tree): protect de-novo topology tips from the call-based placement prune

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fix(denovo): collapse self-labeled private singletons, add --keep-private

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feat(tree): show placed-sample count in sidebar instead of the list

JamesKane
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