CRC_code

Code for selected plots and data analyses in the HNSCC project.

This repository contains scripts used in generating specific visualizations and performing analytical steps related to the study of Head and Colorectal Cancer (CRC).

Repository Structure

The repository includes two main folders:

• python_scripts/: Contains code written in Python, used for tasks such as:

  • Single-cell RNA-seq preprocessing
  • Dimensionality reduction and clustering (e.g., UMAP, PCA)
  • Visualization (e.g., violin plots, dot plots)
  • Correlation and enrichment analysis

• R_scripts/: Contains code written in R, used for:

  • Seurat-based analysis
  • Complex heatmaps
  • Survival analysis
  • Custom statistical plotting