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@LaborBerlin

Labor Berlin - Charité Vivantes GmbH

Clinical Plattform "Bioinformatics & Data Science"

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  1. varvis-download varvis-download Public

    A CLI tool to download genomic analysis files from the Varvis API. Supports authentication, file type selection, proxy settings, and destination directory specification.

    JavaScript 10

  2. score-assemblies score-assemblies Public

    Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).

    Python 27 1

  3. ont-assembly-snake ont-assembly-snake Public

    Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.

    Python 27 3

Repositories

Showing 10 of 16 repositories
  • varvis-download Public

    A CLI tool to download genomic analysis files from the Varvis API. Supports authentication, file type selection, proxy settings, and destination directory specification.

    LaborBerlin/varvis-download’s past year of commit activity
    JavaScript 10 GPL-3.0 0 1 8 Updated Apr 13, 2026
  • TBProfiler Public Forked from jodyphelan/TBProfiler

    Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

    LaborBerlin/TBProfiler’s past year of commit activity
    Python 0 GPL-3.0 47 0 0 Updated Feb 26, 2026
  • action-gh-release Public Forked from softprops/action-gh-release

    📦 :octocat: GitHub Action for creating GitHub Releases

    LaborBerlin/action-gh-release’s past year of commit activity
    TypeScript 0 MIT 639 0 0 Updated Feb 2, 2026
  • action-shellcheck Public Forked from ludeeus/action-shellcheck

    GitHub action for ShellCheck.

    LaborBerlin/action-shellcheck’s past year of commit activity
    Shell 0 MIT 84 0 0 Updated Oct 23, 2025
  • LB-tbdb Public Forked from jodyphelan/tbdb

    Standard database for the TBProfiler tool

    LaborBerlin/LB-tbdb’s past year of commit activity
    Python 2 LGPL-3.0 18 0 0 Updated Oct 10, 2025
  • MultiQC Public Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    LaborBerlin/MultiQC’s past year of commit activity
    JavaScript 2 GPL-3.0 662 0 0 Updated Sep 8, 2025
  • multiqc-test-data Public Forked from MultiQC/test-data

    Test data for MultiQC.

    LaborBerlin/multiqc-test-data’s past year of commit activity
    HTML 0 MIT 157 0 0 Updated Sep 5, 2025
  • setup-gh Public Forked from actions4gh/setup-gh

    👨‍💻 Install & configure the GitHub CLI (gh) in your GitHub Actions runner

    LaborBerlin/setup-gh’s past year of commit activity
    TypeScript 0 MIT 3 0 0 Updated Apr 1, 2025
  • chatgpt-mattermost-bot.fork Public archive Forked from yGuy/chatgpt-mattermost-bot

    A very simple implementation of a service for a mattermost bot that uses ChatGPT in the backend.

    LaborBerlin/chatgpt-mattermost-bot.fork’s past year of commit activity
    TypeScript 3 MIT 58 0 0 Updated Feb 21, 2025
  • simple_baserow_api Public archive Forked from KuechlerO/simple_baserow_api

    A simple python wrapper for the baserow API

    LaborBerlin/simple_baserow_api’s past year of commit activity
    Python 3 Unlicense 3 0 0 Updated Feb 20, 2025
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