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[WIP] Prepare for bioc submission - #4

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mitraak wants to merge 34 commits into
mainfrom
bioc_prep
Open

[WIP] Prepare for bioc submission#4
mitraak wants to merge 34 commits into
mainfrom
bioc_prep

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@mitraak

@mitraak mitraak commented Aug 18, 2026

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Finalize package for bioc submission:

  • add tests
  • add function examples
  • misc feature updates
    • downsampling for plotting large data
    • restyle to show scatter plot selections
    • show contour/heatmap in coexp plot legend
  • add pkdown for github.io pages
  • switch from r-anndata to anndataR. This will have the side-effect of allowing SingleCellExperiment support (by conversion to anndata)
  • add vignette(s)

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