Docs: Sphinx → properdocs migration + descending-drive Poisson fix (+ Optuna parallelization) - #19

Merged

RaulSimpetru merged 61 commits into

mainfrom

feat/puffer-api

Jul 16, 2026

Commits on Jun 23, 2026

docs: add pufferlib-inspired API redesign proposal
RaulSimpetru
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48e40cf
docs: add kernel-core implementation plan
RaulSimpetru
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0b634ca
feat(kernel): add SimState shared buffer
RaulSimpetru
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b3c379a
refactor(kernel): annotate SimState.alloc dtype and return type
RaulSimpetru
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7064909
feat(kernel): add Stage and Backend protocols
RaulSimpetru
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792528d
feat(kernel): add Simulation lockstep driver
RaulSimpetru
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ff87b52
test(kernel): lock one-tick feedback and on_step semantics
RaulSimpetru
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d7b3280
feat(kernel): add SimResult buffer-first snapshot; run() returns it
RaulSimpetru
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466dff6
fix(kernel): SimResult.from_state copies force/EMG buffers (true snapshot)
RaulSimpetru
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1e4fe1c
feat(kernel): add lazy to_neo/to_nwb adapters to SimResult
RaulSimpetru
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0b042fb
test(kernel): prove backend seam and hot-path import discipline
RaulSimpetru
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afe1778
docs(kernel): document SimResult.from_state conventions and numpy boundary
RaulSimpetru
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f89e1b5
fix(kernel): cover spike-only to_neo t_stop and make setup idempotent
RaulSimpetru
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599a758
perf(examples): parallelize watanabe DC-offset Optuna across worker processes
RaulSimpetru
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7b0c549
build: declare h5py in the nwb extra
RaulSimpetru
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205f27f
docs: add mkdocs/properdocs migration design proposal
RaulSimpetru
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d8762a3
docs: add mkdocs/properdocs migration implementation plan
RaulSimpetru
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c147bb5
build(docs): swap Sphinx stack for properdocs + mkdocs-gallery
RaulSimpetru
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e78492e
docs: add properdocs.yml skeleton with material theme + home page
RaulSimpetru
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85d222b
docs: add mkdocstrings API reference pages
RaulSimpetru
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29522b7
docs: migrate home, getting-started, and neo-blocks prose to markdown
RaulSimpetru
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d245a87
docs: add executed example gallery via mkdocs-gallery
RaulSimpetru
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7074fa9
ci(docs): build + deploy properdocs site to GitHub Pages; drop sphinx workflow
RaulSimpetru
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ca99096
docs(gallery): default to source-only rendering (no execution)
RaulSimpetru
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a1a8035
docs: remove Sphinx scaffolding after properdocs migration
RaulSimpetru
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8085642
docs: restore API symbols + landing content dropped in migration
RaulSimpetru
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1d39f3f
docs: home shows the logo only, drop the redundant MyoGen title
RaulSimpetru
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20ed09d

Commits on Jun 24, 2026

Commits on Jul 11, 2026

fix(neuron): make the descending-drive Poisson generator a true Poisson process
RaulSimpetru
committed
603b245

Commits on Jul 12, 2026

Commits on Jul 16, 2026