NeonateSeg

Neonate segmentation project at NIRAL, UNC, with Dr. Martin Styner.

Name		Name	Last commit message	Last commit date
AmygNet		AmygNet
Figures		Figures
ModelCodes		ModelCodes
NewModels		NewModels
NiftyNetModels		NiftyNetModels
Records		Records
SiyangNiftyNetFolder/extensions		SiyangNiftyNetFolder/extensions
Utilities		Utilities
.gitignore		.gitignore
Bern_Inf_Test.ipynb		Bern_Inf_Test.ipynb
Bern_eval.ipynb		Bern_eval.ipynb
Bern_vis.ipynb		Bern_vis.ipynb
CNNvis.ipynb		CNNvis.ipynb
Data_label_stats.ipynb		Data_label_stats.ipynb
Effect_of_Resampling.ipynb		Effect_of_Resampling.ipynb
FindShit.ipynb		FindShit.ipynb
MyNetUtil.ipynb		MyNetUtil.ipynb
README.md		README.md
RemovalForJW.ipynb		RemovalForJW.ipynb
SimpleITK_DataAugmentation.ipynb		SimpleITK_DataAugmentation.ipynb
SiyangConfig.ini		SiyangConfig.ini
Untitled.ipynb		Untitled.ipynb
csv_inspect.ipynb		csv_inspect.ipynb
csv_recorder.ipynb		csv_recorder.ipynb
csv_recorder_func.ipynb		csv_recorder_func.ipynb
data_process.ipynb		data_process.ipynb
data_process_BernNet.ipynb		data_process_BernNet.ipynb
data_process_cr_mask.ipynb		data_process_cr_mask.ipynb
data_process_minimal.ipynb		data_process_minimal.ipynb
data_process_pretrain.ipynb		data_process_pretrain.ipynb
data_process_special.ipynb		data_process_special.ipynb
data_process_trial.ipynb		data_process_trial.ipynb
data_process_trial_2.ipynb		data_process_trial_2.ipynb
label_normalization.ipynb		label_normalization.ipynb
label_normalization_2.ipynb		label_normalization_2.ipynb
nb_py2_1080.sh		nb_py2_1080.sh
nn_inference_eval.ipynb		nn_inference_eval.ipynb
nn_inference_eval_2.ipynb		nn_inference_eval_2.ipynb
nn_inference_eval_3.ipynb		nn_inference_eval_3.ipynb
nn_inference_eval_4.ipynb		nn_inference_eval_4.ipynb
nn_inference_eval_5.ipynb		nn_inference_eval_5.ipynb
nn_inference_eval_6.ipynb		nn_inference_eval_6.ipynb
unet_vis.ipynb		unet_vis.ipynb
unet_vis_2.ipynb		unet_vis_2.ipynb
unet_vis_3.ipynb		unet_vis_3.ipynb
unet_vis_Jenny.ipynb		unet_vis_Jenny.ipynb

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