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Pull requests: UCD-SERG/serodynamics

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Pull requests list

Getting started additions
#298 opened Aug 24, 2026 by sschildhauer Collaborator Loading…
1
23
chore: bump .ai-config to upstream HEAD
#292 opened Aug 17, 2026 by github-actions Bot Loading…
1
No default priors
#284 opened Aug 11, 2026 by sschildhauer Collaborator Loading…
1
40
Add serodynamics Stan model for Chapter 2 (Model 2a, Chapter1+α)
#259 opened Jun 27, 2026 by Kwan-Jenny Collaborator Loading…
11
Add Model 2a: same-parameter cross-biomarker covariance as a JAGS extension of model.jags (strictly nests Chapter 1) + Chapter-1 comparison
#245 opened Jun 13, 2026 by Kwan-Jenny Collaborator Loading…
15
Add IJE Software Application Profile manuscript draft no changelog
#221 opened May 19, 2026 by Kwan-Jenny Collaborator Loading…
33
Add standalone documentation for sr_model class
#195 opened Apr 14, 2026 by Copilot AI • Draft
1
@sschildhauer
5
Add RStan backend with multivariate observation model (Model B)
#191 opened Mar 24, 2026 by Copilot AI • Draft
1
@Kwan-Jenny
Add stratified marginal curve overlay to plot_predicted_curve()
#188 opened Jan 31, 2026 by Copilot AI • Draft
1
@Kwan-Jenny
Revise Chapter 2 documentation: fix notation conflicts and clarify model structure
#187 opened Jan 31, 2026 by Copilot AI • Draft
@Kwan-Jenny
2
Refactor Run_Mod.R, improve Chapter2.qmd: extract helper, fix style, and address review comments
#186 opened Jan 31, 2026 by Copilot AI • Draft
@Kwan-Jenny
2
Add assay-specific Y-axis labels to plot_predicted_curve()
#182 opened Jan 23, 2026 by Copilot AI • Draft
1
@Kwan-Jenny
Remove placeholder text and standardize file naming
#181 opened Jan 22, 2026 by Copilot AI Loading…
@d-morrison
3
Add residual-based posterior predictive diagnostics for individual-level fit evaluation
#180 opened Jan 21, 2026 by Copilot AI • Draft
1
@Kwan-Jenny
3
Add prior predictive check utilities for Bayesian workflow validation
#178 opened Jan 21, 2026 by Copilot AI • Draft
25 tasks done
1
@Kwan-Jenny
5
Add Stan support as alternative Bayesian modeling backend
#175 opened Jan 9, 2026 by Copilot AI Loading…
57 tasks done
1
@d-morrison
202
Add multi-version pkgdown documentation with version dropdown menu
#173 opened Jan 9, 2026 by Copilot AI Loading…
14 tasks done
1
@d-morrison
17
Add chapter2.qmd: fake-data simulation and correlated model setup
#133 opened Sep 23, 2025 by Kwan-Jenny Collaborator Loading…
29
Add Chapter 2 Documentation: Extending Hierarchical Model to Correlated Biomarkers
#129 opened Aug 13, 2025 by Kwan-Jenny Collaborator Loading…
13
Adding ability to run diagnostic functions on individuals
#121 opened Jul 28, 2025 by sschildhauer Collaborator Loading…
17
Creating a default print for sr_model
#114 opened Jul 9, 2025 by sschildhauer Collaborator Loading…
95
Run_mod data input documentation fix
#105 opened Jul 5, 2025 by sschildhauer Collaborator Loading…
1
5
Model description and upcoming additions
#88 opened Apr 15, 2025 by Kwan-Jenny Collaborator Loading…
45
Updating density diagnostic function
#71 opened Mar 11, 2025 by sschildhauer Collaborator Loading…
10
Explaining priors
#61 opened Feb 21, 2025 by kaiemjoy Collaborator Loading…
1
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