Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
VervaekeLab
/
NANSEN
Public
Notifications
You must be signed in to change notification settings
Fork
11
Star
23
Code
Issues
36
Pull requests
3
Actions
Projects
Wiki
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Projects
Wiki
Security and quality
Insights
getting started
Jump to bottom
ehennestad edited this page
Aug 20, 2025
·
1 revision
Coming soon
Wiki pages
Pages
26
Loading
Home
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
Actions Tutorial
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
App ‐ Imviewer
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
App ‐ Roi Classifier
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
App ‐ Roimanager
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
Basic Concepts
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
copilot_instructions
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
External toolbox integrations
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
FAQ
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
File Adapter Tutorial
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
File Adapters ‐ Part 2 Advanced
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
getting started
Coming soon
Loading
ImageStack
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
ImageStackProcessor
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
Installation troubleshooting
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
Keyboard Shortcuts
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
Known Issues
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
Multi‐Session Roi Registration
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
Options Editor (NoRMCorre)
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
Session Methods
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
Session Objects
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
Session Table
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
Tutorial Create dataset project
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
Tutorial ‐ Brain Observatory Visual Coding 2‐Photon
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
Tutorial ‐ Two‐photon Quickstart
Uh oh!
There was an error while loading.
Please reload this page
.
Loading
Two‐Photon Calcium Imaging Processing
Uh oh!
There was an error while loading.
Please reload this page
.
Show 11 more pages…
Overview
Getting Started
Basics
Getting started
Installation
Keyboard shortcuts
Tutorials
Concept tutorials
Actions
File Adapters
Interactive tutorials
Two-Photon demo with example data
Brain Observatory Visual Coding (2P)
Creating your own dataset project
Apps
Imviewer
Roi manager
Roi classifier
Concepts
Session table
Session objects
Session methods
File adapters
Image stack
Image stack processor
How-to guides
Register rois over multiple days
Reference (Coming soon)
Troubleshooting and other resources
Frequently asked questions
Known issues (and solutions)
Add-On installation troubleshooting
External toolbox integrations
Clone this wiki locally
You can’t perform that action at this time.