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feat: Add ability to accept multi word gene_id#2

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madeline-scyphers merged 3 commits into
mainfrom
feature/multi-word-gene-id-support
May 11, 2026
Merged

feat: Add ability to accept multi word gene_id#2
madeline-scyphers merged 3 commits into
mainfrom
feature/multi-word-gene-id-support

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If a gene_id is surrounded by backticks, it can be multi word, ex: Ala (AGC). This is needed for new summarize rules that look at Trna output.

Rule parsing also now looks for any generic BLANK_id column for rules since users can add custom databases, and also this is how the trna will show up.

Update precommit as well.

If a gene_id is surrounded by backticks, it can be multi word,
ex: `Ala (AGC)`. This is needed for new summarize rules that
look at Trna output.

Rule parsing also now looks for any generic BLANK_id column for
rules since users can add custom databases, and also this is
how the trna will show up.

Update precommit as well.
@madeline-scyphers madeline-scyphers added the enhancement New feature or request label May 11, 2026
@madeline-scyphers madeline-scyphers merged commit ba7bab3 into main May 11, 2026
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@madeline-scyphers madeline-scyphers deleted the feature/multi-word-gene-id-support branch May 11, 2026 17:59
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