Updated release for publication with Flipper paper

Streamlines Skipper to focus on core functionality, improves documentation, introduces new normalization method, allows for ensembl GFF files, enabling analyses of multiple species.

Release for cell system/RBPNet/popgen analysis

Release for cell system/RBPNet/popgen analysis
includes model training, benchmark, and mutation scoring scripts and o/e MAPs calculation

Publication release

Pattern matching for aggregating replicates into betabinomial testing been improved to prevent inappropriate comparisons.

More information on reproducible installation of software has been added.

Documentation has been expanded and improved.

Original release

First implementation of transcriptomic window tiling, repetitive element identification, CLIP-seq preprocessing, read counting, enrichment testing, reproducibility measures, transcript and feature type summaries, GO term analysis, and t-SNE visualization.