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1. nygctech/abcSplotch nygctech/abcSplotch Public

   Approximate Bayesian inference of spatial gene expression at cellular resolution, disentangling cell- or sample covariate-driven variation from tissue-specific effects

   Python 1

2. cSplotch cSplotch Public

   Bayesian modeling of multi-tissue ST data, with spot-level deconvolution for Visium-like technologies

   Jupyter Notebook 11 3

3. gridnext gridnext Public

   Common coordinate registration and tissue type discovery using multimodal spatial data (ST + histology)

   Jupyter Notebook 3 3

4. flatironinstitute/st_gridnet flatironinstitute/st_gridnet Public

   A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of high-resolution histology images" developed principally for a…

   Python 25 4