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fix: wrote 0 records to S1_pacbio_minimap2_ISO1_tldr.table.txt - #46

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fix: wrote 0 records to S1_pacbio_minimap2_ISO1_tldr.table.txt#46
webbrain-one wants to merge 1 commit into
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webbrain-one:webbrain/issue-44

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Closes #44

Update README.md to clarify configuration requirements and troubleshooting steps for cases where the pipeline generates empty output tables.
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wrote 0 records to S1_pacbio_minimap2_ISO1_tldr.table.txt

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