Release v1.2.0 - #8
Open
RenzoTale88 wants to merge 26 commits into
Open
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This release add a whole new sub-workflow to detect putative regions under Gene Biased Conversion (gBGC) and separate the neutral model definition from PhyloP, so that it can be used in gBGC too.
Changelog
[v1.2.0]
Added
BGCworkflow detecting regions with high gene conversion rate in the genome using the alignments directlyNEUTRAL_MODELworkflow producing the neutral model needed for bothCONSTRAINEDandBGCChanged
cactus-hal2mafby using--cactus_hal2maf(default use legacy hal2maf)mutyper_variantprocess is now more streamlinedFixed