Implement deserialization from .ga files - #2
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After discussion, it is probably easier to work on the serialization first (Ewoks to Galaxy). I'll draft this for now. |
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March 2, 2026 14:33
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For #1
A Galaxy workflow is made of "steps". Among these steps, there are tools which perform some operations (CLI-based). These are basically Ewoks tasks with
task_type = scriptso no problem for this.However, Galaxy has a
data_inputconcept which is a step that loads data from an arbitrary source. There is no equivalent ,that I know of, in Ewoks. I decided to translate this in a Ewoks taskLoadDataInputthat has to be implemented.Also,
data_inputstep have inputs that are stored in a ambiguous way. I could not really find the equivalent in Ewoks.To add confusion, some inputs seem to be also in a field
tool_state?And the format reference didn't really help me to figure things out.