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gbouras13
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phold
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Fix crash when --omit_probs is combined with 3Di masking
Build and Push Container to Quay
#100:
Pull request
#140
opened by
gbouras13
12m 6s
fix-omit-probs-mask-threshold-12st
fix-omit-probs-mask-threshold-12st
12m 6s
View #140
View workflow file
Fix crash when --omit_probs is combined with 3Di masking
HPCI
#100:
Pull request
#140
opened by
gbouras13
3h 55m 43s
fix-omit-probs-mask-threshold-12st
fix-omit-probs-mask-threshold-12st
3h 55m 43s
View #140
View workflow file
Add .tbl NCBI feature table output for GenBank submission
Build and Push Container to Quay
#99:
Pull request
#139
opened by
gbouras13
14m 10s
tbl-output
tbl-output
14m 10s
View #139
View workflow file
Add .tbl NCBI feature table output for GenBank submission
HPCI
#99:
Pull request
#139
opened by
gbouras13
3h 55m 31s
tbl-output
tbl-output
3h 55m 31s
View #139
View workflow file
Make the .tbl validate cleanly against table2asn
HPCI
#98:
Commit
2001742
pushed by
gbouras13
6h 0m 20s
tbl-output
tbl-output
6h 0m 20s
View #139
View workflow file
Make the .tbl validate cleanly against table2asn
Build and Push Container to Quay
#98:
Commit
2001742
pushed by
gbouras13
13m 29s
tbl-output
tbl-output
13m 29s
View #139
View workflow file
Mark partial CDS in the .tbl output, and fix reverse-strand coordinates
HPCI
#97:
Commit
2cf77fb
pushed by
gbouras13
50m 34s
tbl-output
tbl-output
50m 34s
View workflow file
Mark partial CDS in the .tbl output, and fix reverse-strand coordinates
Build and Push Container to Quay
#97:
Commit
2cf77fb
pushed by
gbouras13
15m 57s
tbl-output
tbl-output
15m 57s
View workflow file
Add .tbl NCBI feature table output for GenBank submission
Build and Push Container to Quay
#96:
Commit
931c0c5
pushed by
gbouras13
11m 20s
tbl-output
tbl-output
11m 20s
View workflow file
Add .tbl NCBI feature table output for GenBank submission
HPCI
#96:
Commit
931c0c5
pushed by
gbouras13
1h 45m 14s
tbl-output
tbl-output
1h 45m 14s
View workflow file
Fix crash when --omit_probs is combined with 3Di masking
HPCI
#95:
Commit
87efc4d
pushed by
gbouras13
6h 0m 18s
fix-omit-probs-mask-threshold-12st
fix-omit-probs-mask-threshold-12st
6h 0m 18s
View #140
View workflow file
Fix crash when --omit_probs is combined with 3Di masking
Build and Push Container to Quay
#95:
Commit
87efc4d
pushed by
gbouras13
14m 40s
fix-omit-probs-mask-threshold-12st
fix-omit-probs-mask-threshold-12st
14m 40s
View #140
View workflow file
Ignore the local HF/ scratch directory
Build and Push Container to Quay
#94:
Commit
cbaf5d9
pushed by
gbouras13
12m 16s
modernprost_12st
modernprost_12st
12m 16s
View workflow file
Ignore the local HF/ scratch directory
HPCI
#94:
Commit
cbaf5d9
pushed by
gbouras13
6h 0m 19s
modernprost_12st
modernprost_12st
6h 0m 19s
View workflow file
Build combined 3Di + 12-state databases with phold createdb
HPCI
#93:
Commit
235ec95
pushed by
gbouras13
6h 0m 18s
modernprost_12st
modernprost_12st
6h 0m 18s
View workflow file
Build combined 3Di + 12-state databases with phold createdb
Build and Push Container to Quay
#93:
Commit
235ec95
pushed by
gbouras13
2m 50s
modernprost_12st
modernprost_12st
2m 50s
View workflow file
Keep torch and transformers off the phold startup path
Build and Push Container to Quay
#92:
Commit
8491fff
pushed by
gbouras13
18m 18s
modernprost_12st
modernprost_12st
18m 18s
View workflow file
Keep torch and transformers off the phold startup path
HPCI
#92:
Commit
8491fff
pushed by
gbouras13
21m 47s
modernprost_12st
modernprost_12st
21m 47s
View workflow file
Derive 12-state e-values from reconstructed profile frequencies
Build and Push Container to Quay
#91:
Commit
38c2bc2
pushed by
gbouras13
12m 11s
modernprost_12st
modernprost_12st
12m 11s
View workflow file
Derive 12-state e-values from reconstructed profile frequencies
HPCI
#91:
Commit
38c2bc2
pushed by
gbouras13
16m 42s
modernprost_12st
modernprost_12st
16m 42s
View workflow file
Add ModernProst 3Di + 12-state models via --model
HPCI
#90:
Commit
7d55121
pushed by
gbouras13
16m 57s
modernprost_12st
modernprost_12st
16m 57s
View workflow file
Add ModernProst 3Di + 12-state models via --model
Build and Push Container to Quay
#90:
Commit
7d55121
pushed by
gbouras13
11m 27s
modernprost_12st
modernprost_12st
11m 27s
View workflow file
Document real peak disk usage during 'phold install'
HPCI
#89:
Commit
8645d59
pushed by
gbouras13
16m 1s
docs/fix-install-disk-space-note
docs/fix-install-disk-space-note
16m 1s
View workflow file
Document real peak disk usage during 'phold install'
Build and Push Container to Quay
#89:
Commit
8645d59
pushed by
gbouras13
18m 9s
docs/fix-install-disk-space-note
docs/fix-install-disk-space-note
18m 9s
View workflow file
Symlink python -> python3 in hpci container image
HPCI
#88:
Commit
1447977
pushed by
gbouras13
1h 23m 27s
phold_lib
phold_lib
1h 23m 27s
View workflow file
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