#88 plus review fixes - #89

Merged

gbouras13 merged 8 commits into

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pr88-review-fixes

Sep 4, 2026

Commits on Aug 13, 2026

perf(qc): compress chopper output with bgzip, and wait on every stage
sanjaynagi-eit
committed
53f72f0
test: repair the truncated input_half.fastq.gz fixture
sanjaynagi-eit
committed
fa70e82

Commits on Aug 18, 2026

fix: restore 75bp long read cropping ignored by chopper >=0.11.0

gbouras13
and
claude
committed
0148dc8
test: restore the concat.fastq fixture deleted in 53f72f0

gbouras13
and
claude
committed
4599cbc
fix(qc): reap killed stages on the chopper error path

gbouras13
and
claude
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162ad5a
Merge branch 'fix/chopper-fixed-crop' into claude/blissful-burnell-fc1477
gbouras13
committed
aabce74
fix(qc): make chopper failures fatal instead of silently empty

gbouras13
and
claude
committed
51b4761

Commits on Aug 24, 2026

docs: credit #88 in the 1.8.4 release notes

gbouras13
and
claude
committed
c448a07