Search results

Does pvacseq run support custom HLA/MHC sequencing input via NetMHCpan's -hlaseq option for non-model organisms?

Status: Open.

#1415 In griffithlab/pVACtools;

· noralis-bit opened on Jul 6, 2026

Consider new stability prediction algorithm SPEARMINT

Status: Open.

#1413 In griffithlab/pVACtools;

· malachig opened on Jul 1, 2026

Remove the Combined results

Status: Open.

#1412 In griffithlab/pVACtools;

· susannasiebert opened on Jun 29, 2026

·  

8.0

Add AA -> mRNA backtranslation to pVACvector

Status: Open.

#1411 In griffithlab/pVACtools;

· susannasiebert opened on Jun 16, 2026

·  

8.0

Proposal: staged behavior-preserving refactor of tool responsibility placement

Status: Open.

#1408 In griffithlab/pVACtools;

· martin1cifuentes opened on Jun 6, 2026

Update IEDB to use Next-Generation (NG) IEDB Tools API

Status: Open.

#1400 In griffithlab/pVACtools;

· susannasiebert opened on May 21, 2026

·  

8.0

Add NMD prediction support

Status: Open.

#1370 In griffithlab/pVACtools;

· mhoang22 opened on Mar 6, 2026

pVACview crashing/blanking out when uploading large metrics.json file (313MB+)

Status: Open.

#1365 In griffithlab/pVACtools;

· bioaman opened on Feb 10, 2026

Suggestion to use WhatsHap for phasing VCFs

Status: Open.

#1362 In griffithlab/pVACtools;

· jonng1000 opened on Jan 22, 2026

·  

8.0

Investigate AEGIS for class II prediction

prediction_algorithms

Status: Open.

#1361 In griffithlab/pVACtools;

· malachig opened on Jan 16, 2026

Investigate MARIA for class II predictions

prediction_algorithms

Status: Open.

#1360 In griffithlab/pVACtools;

· malachig opened on Jan 16, 2026

Use tumor ploidy and cellularity estimates from FACETS and/or Sequenza for clonality assessment

feature addition

Status: Open.

#1355 In griffithlab/pVACtools;

· susannasiebert opened on Jan 5, 2026