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jochotecoa/README.md

Hi there, I'm Juan Ochoteco Asensio πŸ‘‹

I am a Postdoctoral Researcher in Cancer Epigenomics at CABIMER (Andalusia Center for Molecular Biology and Regenerative Medicine). My research focuses on leveraging multi-omics integration and machine learning to understand the epigenetic drivers of cancer.

πŸ”¬ Research Focus & Metrics

  • Current Work: Investigating the epigenetic landscape and regulatory networks in cancer.
  • Impact: 128 Citations | h-index: 5 (as of 2026).
  • Specializations: Cancer Epigenomics, Multi-omics Data Integration, and Machine Learning in Bioinformatics.

πŸ›  Tech Stack

  • Languages: R (Expert), Python, Bash.
  • Bioinformatics: Bioconductor, DESeq2, Tidyverse, miRanda, biomaRt.
  • Reproducibility: Renv, Git/GitHub, Modular Code Design.

πŸ“š Selected Publications

  • Predicting missing proteomics values from mRNA expression data using machine learning | CSBJ, 2022.
  • R-ODAF: Omics data analysis framework for regulatory application | Bioinformatics, 2022.
  • Multi-omics HeCaToS dataset of repeated dose toxicity for cardiotoxic & hepatotoxic compounds | Scientific Data, 2022.
  • Knock-down of FOXO3, GATA2, NFE2L2 and AHR promotes doxorubicin-induced cardiotoxicity | Scientific Reports, 2024.

πŸ“‚ Featured Repositories

  • ml_proteomics: Official codebase for mRNA-to-protein predictive modeling using machine learning.
  • CircRNA-Cardio-MultiOmics: Bioinformatics pipeline for analyzing circular RNA regulatory networks.

πŸ“« Connect with me

Popular repositories Loading

  1. ml_proteomics ml_proteomics Public

    R 1

  2. proteins_expressed_in_predictive_ranges proteins_expressed_in_predictive_ranges Public

    R

  3. analysis_trc analysis_trc Public

    R

  4. trc_scripts trc_scripts Public

    R

  5. Multi-Omics-Regulome Multi-Omics-Regulome Public

    Scripts in my UM computer

    Jupyter Notebook

  6. Own-Projects Own-Projects Public

    R