A coding editor for the biologist. This is designed to help non-computer-scientists with the following skills:
- Navigate remote server files
- Build data pipelines
- Configure environments, especially conda
- Work with High Performance Computing systems
- Lessen the amount of Linux and configuration needed to start
This is under the philosophy that the limiting factor for genomics, bioinformatics, or any other biology based research should be biology, not computational theory.
git
Node and npm (built using Node version 10.16.3 and Npm version 6.9.0)
Yarn: A package manager that handles Node packages and builds the application. It can work with npm, but yarn is preferred.
- Clone repository locally
cd cellyarnyarn start
All contributions should go through the Issues tab.
Contributions can be bug reports, feature requests, or changes to the repo.
A bug report should include what steps to reproduce the error and any data you might find prudent (OS, stack trace if possible, the weather, etc)
Feature requests should include what you want to see, why you think it's necessary, and possibly implementation details.
Changes to the repo. Make one of the above issues first. Once a plan is reached and implemented, make a pull request with the repo and it'll be reviewed for incorporation into the project.
Dr. Miram Konkel, Clemson University Assistant Professor of Genetics, for being the principal advisor and her support of this project
Clemson University is acknowledged for generous allotment of compute time on Palmetto cluster.
This is a part of an independent study course at Clemson University