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chore(deps): lock file maintenance#98

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chore(deps): lock file maintenance#98
renovate[bot] wants to merge 2 commits into
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renovate/lock-file-maintenance

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@renovate

@renovate renovate Bot commented Mar 30, 2026 •
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This PR contains the following updates:

Update Change
lockFileMaintenance All locks refreshed

Warning

Some dependencies could not be looked up. Check the Dependency Dashboard for more information.

🔧 This Pull Request updates lock files to use the latest dependency versions.

Configuration

📅 Schedule: (UTC)

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  • Automerge
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🚦 Automerge: Enabled.

♻ Rebasing: Whenever PR is behind base branch, or you tick the rebase/retry checkbox.

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This PR was generated by Mend Renovate. View the repository job log.

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renovate Bot requested a review from liblaf March 30, 2026 04:45
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renovate Bot force-pushed the renovate/lock-file-maintenance branch from b8e04d5 to 6571406 Compare May 23, 2026 07:12
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@liblaf-mega-linter

liblaf-mega-linter Bot commented May 23, 2026 •
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✅⚠️MegaLinter analysis: Success with warnings

Descriptor Linter Files Fixed Errors Warnings Elapsed time
✅ BASH shellcheck 2 0 0 0.32s
✅ BASH shfmt 2 0 0 0 0.62s
⚠️ COPYPASTE jscpd yes 642 no 7.72s
⚠️ JSON jsonlint 41 1 0 0.66s
✅ JSON prettier 41 28 0 0 2.14s
✅ JSON v8r 41 0 0 7.48s
✅ MARKDOWN rumdl 59 0 0 0 0.86s
⚠️ PYTHON ruff yes yes 64 no 2.03s
✅ PYTHON ruff-format yes yes no no 0.36s
✅ REPOSITORY git_diff yes no no 0.7s
⚠️ SPELL cspell 339 60 0 8.14s

Detailed Issues

⚠️ SPELL / cspell - 60 errors 
(cmap)       -- cmap="viridis",
	 Suggestions: [camp, mcap, chap, clap, crap]
exp/2026/05/27/forward-face/src/20-forward-face.py:393:15    - Unknown word (viridis)    -- cmap="viridis",
	 Suggestions: [virid, veridic, virions, viridian, viridity]
exp/2026/05/27/forward-face/src/20-forward-face.py:404:9     - Unknown word (cmap)       -- cmap="viridis",
	 Suggestions: [camp, mcap, chap, clap, crap]
exp/2026/05/27/forward-face/src/20-forward-face.py:404:15    - Unknown word (viridis)    -- cmap="viridis",
	 Suggestions: [virid, veridic, virions, viridian, viridity]
exp/2026/05/27/inverse-face/docs/10-inverse-face-3152k-expression001.md:31:82     - Unknown word (atol)       -- with `rtol = 5e-4`, `atol = 0`, and `max_steps
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/27/inverse-face/docs/10-inverse-face-3152k-expression001.md:69:145    - Unknown word (atol)       -- baseline because `forward_atol = 0`. The successful
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/27/inverse-face/docs/10-worklog.md:12:218    - Unknown word (atol)       -- with `rtol = 5e-4`, `atol = 0`, and `max_steps
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/27/inverse-face/docs/10-worklog.md:60:155    - Unknown word (atol)       -- equilibrium and `forward_atol = 0`, the first relative
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/06/10/surface-prestrain/data/10-surface-prestrain-forward-table.md:1:36      - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/data/20-surface-prestrain-expression000-table.md:1:36      - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/data/21-surface-prestrain-expression000-prestrain04-table.md:1:36      - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/data/22-surface-metric-penalty-expression000-prestrain10-table.md:1:36      - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/data/30-volume-area-change-diagnostics-summary.json:20:142    - Unknown word (isface)     -- expression000-smas1-isface.vtp",
	 Suggestions: [iface, isaac, issac, infare, isaacs]
exp/2026/06/10/surface-prestrain/data/30-volume-area-change-diagnostics-summary.json:22:18     - Unknown word (isface)     -- "surface/n_isface_triangles": 13079,
	 Suggestions: [iface, isaac, issac, infare, isaacs]
exp/2026/06/10/surface-prestrain/data/30-volume-area-change-diagnostics-summary.json:54:142    - Unknown word (isface)     -- expression000-smas1-isface.vtp",
	 Suggestions: [iface, isaac, issac, infare, isaacs]
exp/2026/06/10/surface-prestrain/data/30-volume-area-change-diagnostics-summary.json:56:18     - Unknown word (isface)     -- "surface/n_isface_triangles": 13079,
	 Suggestions: [iface, isaac, issac, infare, isaacs]
exp/2026/06/10/surface-prestrain/data/30-volume-area-change-diagnostics-summary.json:88:142    - Unknown word (isface)     -- expression000-smas1-isface.vtp",
	 Suggestions: [iface, isaac, issac, infare, isaacs]
exp/2026/06/10/surface-prestrain/data/30-volume-area-change-diagnostics-table.md:1:32      - Unknown word (tris)       -- label | tets | IsFace tris | volume rel RMS | volume
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/docs/10-surface-prestrain-forward.md:18:165    - Unknown word (isface)     -- TAGS='surface-prestrain,isface,515k,3152k,direct-forward
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/10-surface-prestrain-forward.md:73:36     - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/docs/20-surface-prestrain-expression000.md:17:169    - Unknown word (isface)     -- TAGS='surface-prestrain,isface,Expression000,515k,
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/20-surface-prestrain-expression000.md:21:71     - Unknown word (noclamp)    -- face-fresh-nu049-smas1-noclamp-super-loose-reg.vtu
	 Suggestions: [onramp, nodemap, on-ramp, ncap, nola]
exp/2026/06/10/surface-prestrain/docs/20-surface-prestrain-expression000.md:72:36     - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/docs/21-surface-prestrain-expression000-prestrain04.md:16:169    - Unknown word (isface)     -- TAGS='surface-prestrain,isface,Expression000,515k,
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/21-surface-prestrain-expression000-prestrain04.md:20:71     - Unknown word (noclamp)    -- face-fresh-nu049-smas1-noclamp-super-loose-reg.vtu
	 Suggestions: [onramp, nodemap, on-ramp, ncap, nola]
exp/2026/06/10/surface-prestrain/docs/21-surface-prestrain-expression000-prestrain04.md:68:36     - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/docs/22-surface-metric-penalty-expression000-prestrain10.md:17:178    - Unknown word (isface)     -- TAGS='surface-prestrain,isface,Expression000,515k,
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/22-surface-metric-penalty-expression000-prestrain10.md:21:71     - Unknown word (noclamp)    -- face-fresh-nu049-smas1-noclamp-super-loose-reg.vtu
	 Suggestions: [onramp, nodemap, on-ramp, ncap, nola]
exp/2026/06/10/surface-prestrain/docs/22-surface-metric-penalty-expression000-prestrain10.md:72:36     - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/docs/30-volume-area-change-diagnostics.md:16:208    - Unknown word (isface)     -- volume-change,area-change,isface,515k,3152k,diagnostics
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/30-volume-area-change-diagnostics.md:45:54     - Unknown word (isface)     -- expression000-smas1-isface.vtp`
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/30-volume-area-change-diagnostics.md:46:57     - Unknown word (isface)     -- expression000-smas100-isface.vtp`
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/30-volume-area-change-diagnostics.md:47:54     - Unknown word (isface)     -- expression000-smas1-isface.vtp`
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/30-volume-area-change-diagnostics.md:48:57     - Unknown word (isface)     -- expression000-smas100-isface.vtp`
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/src/30-volume-area-change-diagnostics.py:152:5     - Unknown word (isface)     -- def isface_triangles(
	 Suggestions: [iface, isaac, issac, infare, isback]
exp/2026/06/10/surface-prestrain/src/30-volume-area-change-diagnostics.py:175:5     - Unknown word (isface)     -- isface = pv.PolyData(mesh.points
	 Suggestions: [iface, isaac, issac, infare, isback]
exp/2026/06/10/surface-prestrain/src/30-volume-area-change-diagnostics.py:176:5     - Unknown word (isface)     -- isface.point_data["vtkOriginalPointI
	 Suggestions: [iface, isaac, issac, infare, isback]
exp/2026/06/10/surface-prestrain/src/30-volume-area-change-diagnostics.py:177:5     - Unknown word (isface)     -- isface.point_data[mask_name
	 Suggestions: [iface, isaac, issac, infare, isback]
exp/2026/06/10/surface-prestrain/src/30-volume-area-change-diagnostics.py:178:23    - Unknown word (isface)     -- return triangles, isface
	 Suggestions: [iface, isaac, issac, infare, isback]
exp/2026/06/10/surface-prestrain/src/30-volume-area-change-diagnostics.py:342:41    - Unknown word (tris)       -- label | tets | IsFace tris | volume rel RMS | volume
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/unreachable-inverse-physics/docs/10-real-mesh-area-volume.md:20:73     - Unknown word (isface)     -- mesh,diagnostic-vtu,isface,clean" \
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/unreachable-inverse-physics/docs/10-real-mesh-area-volume.md:74:376    - Unknown word (unreachability) -- support a global volume-unreachability explanation for it.
	 Suggestions: [unreadability, reachability, unreliability]
src/liblaf/apple/inverse/_diff_forward.py:92:9      - Unknown word (rprecondition) -- def rprecondition(self, p_free: Free)
	 Suggestions: [precondition, preCondition, PRECONDITION, recondition, rpreconditioner]
src/liblaf/apple/inverse/_diff_forward.py:99:21     - Unknown word (rprecondition) -- return self.rprecondition(p_free)
	 Suggestions: [precondition, preCondition, PRECONDITION, recondition, rpreconditioner]
CSpell: Files checked: 320, skipped: 19, Issues found: 60 in 28 files.


You can skip this misspellings by defining the following .cspell.json file at the root of your repository
Of course, please correct real typos before :)

{
    "version": "0.2",
    "language": "en",
    "ignorePaths": [
        "**/node_modules/**",
        "**/vscode-extension/**",
        "**/.git/**",
        "**/.pnpm-lock.json",
        ".vscode",
        "package-lock.json",
        "megalinter-reports"
    ],
    "words": [
        "Efat",
        "Esmas",
        "atol",
        "bbox",
        "cmap",
        "isface",
        "noclamp",
        "rprecondition",
        "tris",
        "unreachability",
        "viridis"
    ]
}


You can also copy-paste megalinter-reports/LINTER_DEFAULT at the root of your repository

(Truncated to last 10000 characters out of 13107)
⚠️ COPYPASTE / jscpd - 642 errors 
s, 93 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/50-toy-tetwild-experiments.py [115:56 - 126:4]
Clone found (python)
 - exp/2026/06/10/unreachable-inverse-physics/src/10-real-mesh-area-volume.py [134:5 - 141:7] (8 lines, 77 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/20-toy-unreachable-inverse.py [243:5 - 250:10]
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 - exp/2026/06/10/unreachable-inverse-physics/src/10-real-mesh-area-volume.py [141:5 - 152:4] (12 lines, 96 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/41-area-change-surfaces.py [79:5 - 90:4]
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 - exp/2026/06/10/unreachable-inverse-physics/src/10-real-mesh-area-volume.py [180:45 - 190:4] (11 lines, 94 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/41-area-change-surfaces.py [61:36 - 71:4]
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 - exp/2026/06/10/unreachable-inverse-physics/src/10-real-mesh-area-volume.py [466:35 - 477:65] (12 lines, 68 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/20-toy-unreachable-inverse.py [837:68 - 848:65]
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 - exp/2026/06/10/unreachable-inverse-physics/src/20-toy-unreachable-inverse.py [278:57 - 285:20] (8 lines, 60 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/50-toy-tetwild-experiments.py [216:37 - 222:20]
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 - exp/2026/06/10/unreachable-inverse-physics/src/20-toy-unreachable-inverse.py [830:1 - 849:14] (20 lines, 182 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/30-toy-target-magnitude-sweep.py [120:1 - 139:14]
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 - exp/2026/06/10/unreachable-inverse-physics/src/20-toy-unreachable-inverse.py [830:1 - 849:14] (20 lines, 182 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/50-toy-tetwild-experiments.py [523:1 - 542:14]
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 - exp/2026/06/10/unreachable-inverse-physics/src/20-toy-unreachable-inverse.py [831:26 - 849:14] (19 lines, 154 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/40-toy-forward-activation.py [315:17 - 333:14]
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 - exp/2026/06/10/unreachable-inverse-physics/src/20-toy-unreachable-inverse.py [841:34 - 850:251] (10 lines, 52 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/30-toy-target-magnitude-sweep.py [131:34 - 140:204]
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 - exp/2026/06/10/unreachable-inverse-physics/src/20-toy-unreachable-inverse.py [900:5 - 913:24] (14 lines, 107 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/40-toy-forward-activation.py [366:10 - 379:24]
Clone found (python)
 - exp/2026/06/10/unreachable-inverse-physics/src/30-toy-target-magnitude-sweep.py [15:1 - 32:26] (18 lines, 98 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/42-toy-volume-field-backfill.py [15:1 - 32:26]
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 - exp/2026/06/10/unreachable-inverse-physics/src/30-toy-target-magnitude-sweep.py [17:1 - 32:26] (16 lines, 94 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/40-toy-forward-activation.py [19:1 - 34:26]
Clone found (python)
 - exp/2026/06/10/unreachable-inverse-physics/src/40-toy-forward-activation.py [17:1 - 34:26] (18 lines, 100 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/50-toy-tetwild-experiments.py [18:1 - 35:26]
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 - exp/2026/06/10/unreachable-inverse-physics/src/40-toy-forward-activation.py [87:1 - 95:31] (9 lines, 87 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/50-toy-tetwild-experiments.py [348:1 - 353:68]
Clone found (python)
 - exp/2026/06/10/unreachable-inverse-physics/src/40-toy-forward-activation.py [96:9 - 110:4] (15 lines, 96 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/50-toy-tetwild-experiments.py [353:68 - 367:4]
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 - exp/2026/06/10/unreachable-inverse-physics/src/40-toy-forward-activation.py [124:65 - 133:37] (10 lines, 56 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/50-toy-tetwild-experiments.py [380:72 - 387:70]
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 - exp/2026/06/10/unreachable-inverse-physics/src/50-toy-tetwild-experiments.py [321:25 - 329:55] (9 lines, 67 tokens)
   exp/2026/06/10/unreachable-inverse-physics/src/50-toy-tetwild-experiments.py [438:30 - 446:55]
Clone found (python)
 - src/liblaf/apple/warp/fem/_arap.py [7:33 - 21:74] (15 lines, 63 tokens)
   src/liblaf/apple/warp/fem/_neo_hookean.py [7:41 - 21:74]
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 - src/liblaf/apple/warp/fem/_arap.py [89:53 - 121:6] (33 lines, 187 tokens)
   src/liblaf/apple/warp/fem/_neo_hookean.py [118:55 - 150:6]
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 - src/liblaf/apple/warp/fem/_base.py [166:40 - 172:70] (7 lines, 56 tokens)
   src/liblaf/apple/warp/fem/_base.py [189:37 - 195:70]
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 - src/liblaf/apple/warp/fem/_base.py [166:31 - 172:70] (7 lines, 58 tokens)
   src/liblaf/apple/warp/fem/_base.py [211:31 - 217:70]
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 - src/liblaf/apple/warp/fem/_base.py [166:40 - 173:54] (8 lines, 67 tokens)
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 - src/liblaf/apple/warp/fem/_base.py [167:9 - 172:70] (6 lines, 54 tokens)
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 - src/liblaf/apple/warp/fem/_base.py [262:14 - 269:67] (8 lines, 67 tokens)
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 - src/liblaf/apple/warp/fem/_base.py [296:9 - 302:70] (7 lines, 65 tokens)
   src/liblaf/apple/warp/fem/_base.py [327:9 - 333:70]
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 - src/liblaf/apple/warp/fem/_neo_hookean.py [1:1 - 28:15] (28 lines, 152 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [1:1 - 28:15]
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 - src/liblaf/apple/warp/fem/_neo_hookean.py [29:51 - 39:15] (11 lines, 66 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [29:58 - 39:15]
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 - src/liblaf/apple/warp/fem/_neo_hookean.py [39:44 - 60:15] (22 lines, 114 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [39:47 - 60:15]
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 - src/liblaf/apple/warp/fem/_neo_hookean.py [53:1 - 62:70] (10 lines, 96 tokens)
   src/liblaf/apple/warp/fem/_neo_hookean.py [74:78 - 83:70]
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 - src/liblaf/apple/warp/fem/_neo_hookean.py [53:11 - 62:70] (10 lines, 92 tokens)
   src/liblaf/apple/warp/fem/_neo_hookean.py [93:14 - 102:70]
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 - src/liblaf/apple/warp/fem/_neo_hookean.py [62:63 - 83:21] (22 lines, 150 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [62:22 - 83:29]
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 - src/liblaf/apple/warp/fem/_neo_hookean.py [83:63 - 102:21] (20 lines, 152 tokens)
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 - src/liblaf/apple/warp/fem/_neo_hookean.py [102:63 - 110:6] (9 lines, 55 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [102:22 - 110:6]
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 - src/liblaf/apple/warp/fem/_neo_hookean.py [110:17 - 150:6] (41 lines, 256 tokens)
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 - src/liblaf/apple/warp/fem/_neo_hookean.py [116:43 - 150:6] (35 lines, 216 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [135:10 - 169:6]
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 - src/liblaf/apple/warp/fem/_stable_neo_hookean.py [25:18 - 34:78] (10 lines, 83 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [27:18 - 36:78]
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 - src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [21:28 - 26:7] (6 lines, 51 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [102:36 - 108:6]
Clone found (python)
 - src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [36:67 - 41:28] (6 lines, 52 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [57:1 - 62:28]
Clone found (python)
 - src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [36:35 - 45:18] (10 lines, 104 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [81:46 - 92:29]
Clone found (python)
 - src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [57:11 - 70:26] (14 lines, 98 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [103:14 - 115:35]
Clone found (python)
 - src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [86:14 - 94:12] (9 lines, 55 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [108:14 - 116:12]
┌────────┬────────────────┬─────────────┬──────────────┬──────────────┬──────────────────┬───────────────────┐
│ Format │ Files analyzed │ Total lines │ Total tokens │ Clones found │ Duplicated lines │ Duplicated tokens │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ bash   │ 1              │ 38          │ 74           │ 0            │ 0 (0.00%)        │ 0 (0.00%)         │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ csv    │ 8              │ 160         │ 20267        │ 0            │ 0 (0.00%)        │ 0 (0.00%)         │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ python │ 189            │ 44616       │ 301002       │ 642          │ 17030 (38.17%)   │ 122198 (40.60%)   │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ toml   │ 5              │ 919         │ 2340         │ 0            │ 0 (0.00%)        │ 0 (0.00%)         │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ Total: │ 203            │ 45733       │ 323683       │ 642          │ 17030 (37.24%)   │ 122198 (37.75%)   │
└────────┴────────────────┴─────────────┴──────────────┴──────────────┴──────────────────┴───────────────────┘
Found 642 clones.
HTML report saved to megalinter-reports/copy-paste/jscpd-report.html
ERROR: jscpd found too many duplicates (37.2%) over threshold (0.0%)
time: 1.46s

(Truncated to last 10000 characters out of 128659)
⚠️ JSON / jsonlint - 1 error 
File: exp/2026/01/28/smas/data/21-forward-bottom-dirichlet-stable-neo-hookean-hessian.json
Parse error on line 6, column 22:
...   "best_decrease": Infinity,    "relat...
-----------------------^
No value found for key "best_decrease"
⚠️ PYTHON / ruff - 64 errors 
format_float(row["delta/surface_displacement_laplacian_rms"]),
903 | |                     format_float(row["forward/steps"]),
904 | |                     format_float(row["forward/success"]),
905 | |                 ]
906 | |             )
907 | |             + " |"
908 | |         )
    | |_________^
909 |       path.write_text("\n".join(lines) + "\n", encoding="utf-8")
    |
help: Replace for loop with list.extend

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/20-surface-prestrain-expression000.py:252:49
    |
250 |         output = self.base.grad(state)
251 |         with torch.enable_grad():
252 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
253 |             energy = self.surface.energy(u)
254 |             (grad,) = torch.autograd.grad(energy, u)
    |

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/20-surface-prestrain-expression000.py:263:49
    |
261 |         output = self.base.hess_prod(state, p)
262 |         with torch.enable_grad():
263 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
264 |             p_local = p.detach()
265 |             energy = self.surface.energy(u)
    |

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/20-surface-prestrain-expression000.py:277:49
    |
275 |     def hess_prod_surface(self, state: Any, p: Full) -> Full:
276 |         with torch.enable_grad():
277 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
278 |             p_local = p.detach()
279 |             energy = self.surface.energy(u)
    |

PERF401 Use `list.extend` to create a transformed list
   --> exp/2026/06/10/surface-prestrain/src/20-surface-prestrain-expression000.py:894:9
    |
892 |       ]
893 |       for row in rows:
894 | /         lines.append(
895 | |             "| "
896 | |             + " | ".join(
897 | |                 [
898 | |                     str(row["case"]),
899 | |                     format_float(row["target/n_points"]),
900 | |                     format_float(row["surface/n_prestrain_triangles"]),
901 | |                     format_float(row["previous/target/error_rms"]),
902 | |                     format_float(row["prestrain/target/error_rms"]),
903 | |                     format_float(row["delta/target_error_rms"]),
904 | |                     format_float(row["previous/surface/displacement_laplacian_rms"]),
905 | |                     format_float(row["prestrain/surface/displacement_laplacian_rms"]),
906 | |                     format_float(row["delta/surface_displacement_laplacian_rms"]),
907 | |                     format_float(row["forward/steps"]),
908 | |                     format_float(row["forward/success"]),
909 | |                 ]
910 | |             )
911 | |             + " |"
912 | |         )
    | |_________^
913 |       path.write_text("\n".join(lines) + "\n", encoding="utf-8")
    |
help: Replace for loop with list.extend

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/21-surface-prestrain-expression000-prestrain04.py:256:49
    |
254 |         output = self.base.grad(state)
255 |         with torch.enable_grad():
256 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
257 |             energy = self.surface.energy(u)
258 |             (grad,) = torch.autograd.grad(energy, u)
    |

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/21-surface-prestrain-expression000-prestrain04.py:267:49
    |
265 |         output = self.base.hess_prod(state, p)
266 |         with torch.enable_grad():
267 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
268 |             p_local = p.detach()
269 |             energy = self.surface.energy(u)
    |

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/21-surface-prestrain-expression000-prestrain04.py:281:49
    |
279 |     def hess_prod_surface(self, state: Any, p: Full) -> Full:
280 |         with torch.enable_grad():
281 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
282 |             p_local = p.detach()
283 |             energy = self.surface.energy(u)
    |

PERF401 Use `list.extend` to create a transformed list
   --> exp/2026/06/10/surface-prestrain/src/21-surface-prestrain-expression000-prestrain04.py:902:9
    |
900 |       ]
901 |       for row in rows:
902 | /         lines.append(
903 | |             "| "
904 | |             + " | ".join(
905 | |                 [
906 | |                     str(row["case"]),
907 | |                     format_float(row["target/n_points"]),
908 | |                     format_float(row["surface/n_prestrain_triangles"]),
909 | |                     format_float(row["previous/target/error_rms"]),
910 | |                     format_float(row["prestrain/target/error_rms"]),
911 | |                     format_float(row["delta/target_error_rms"]),
912 | |                     format_float(row["previous/surface/displacement_laplacian_rms"]),
913 | |                     format_float(row["prestrain/surface/displacement_laplacian_rms"]),
914 | |                     format_float(row["delta/surface_displacement_laplacian_rms"]),
915 | |                     format_float(row["forward/steps"]),
916 | |                     format_float(row["forward/success"]),
917 | |                 ]
918 | |             )
919 | |             + " |"
920 | |         )
    | |_________^
921 |       path.write_text("\n".join(lines) + "\n", encoding="utf-8")
    |
help: Replace for loop with list.extend

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/22-surface-metric-penalty-expression000-prestrain10.py:284:49
    |
282 |         output = self.base.grad(state)
283 |         with torch.enable_grad():
284 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
285 |             energy = self.surface.energy(u)
286 |             (grad,) = torch.autograd.grad(energy, u)
    |

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/22-surface-metric-penalty-expression000-prestrain10.py:295:49
    |
293 |         output = self.base.hess_prod(state, p)
294 |         with torch.enable_grad():
295 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
296 |             p_local = p.detach()
297 |             energy = self.surface.energy(u)
    |

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/22-surface-metric-penalty-expression000-prestrain10.py:309:49
    |
307 |     def hess_prod_surface(self, state: Any, p: Full) -> Full:
308 |         with torch.enable_grad():
309 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
310 |             p_local = p.detach()
311 |             energy = self.surface.energy(u)
    |

PERF401 Use `list.extend` to create a transformed list
   --> exp/2026/06/10/surface-prestrain/src/22-surface-metric-penalty-expression000-prestrain10.py:927:9
    |
925 |       ]
926 |       for row in rows:
927 | /         lines.append(
928 | |             "| "
929 | |             + " | ".join(
930 | |                 [
931 | |                     str(row["case"]),
932 | |                     format_float(row["target/n_points"]),
933 | |                     format_float(row["surface/n_prestrain_triangles"]),
934 | |                     format_float(row["previous/target/error_rms"]),
935 | |                     format_float(row["prestrain/target/error_rms"]),
936 | |                     format_float(row["delta/target_error_rms"]),
937 | |                     format_float(row["previous/surface/displacement_laplacian_rms"]),
938 | |                     format_float(row["prestrain/surface/displacement_laplacian_rms"]),
939 | |                     format_float(row["delta/surface_displacement_laplacian_rms"]),
940 | |                     format_float(row["forward/steps"]),
941 | |                     format_float(row["forward/success"]),
942 | |                 ]
943 | |             )
944 | |             + " |"
945 | |         )
    | |_________^
946 |       path.write_text("\n".join(lines) + "\n", encoding="utf-8")
    |
help: Replace for loop with list.extend

PERF401 Use `list.extend` to create a transformed list
   --> exp/2026/06/10/surface-prestrain/src/30-volume-area-change-diagnostics.py:346:9
    |
344 |       ]
345 |       for row in rows:
346 | /         lines.append(
347 | |             "| "
348 | |             + " | ".join(
349 | |                 [
350 | |                     str(row["case"]),
351 | |                     str(row["label"]),
352 | |                     format_float(row["mesh/n_tets"]),
353 | |                     format_float(row["surface/n_isface_triangles"]),
354 | |                     format_float(row["volume/rms"]),
355 | |                     format_float(row["volume/total_rel_change"]),
356 | |                     format_float(row["area/rms"]),
357 | |                     format_float(row["area/total_rel_change"]),
358 | |                     format_float(row["volume/n_inverted"]),
359 | |                 ]
360 | |             )
361 | |             + " |"
362 | |         )
    | |_________^
363 |       path.write_text("\n".join(lines) + "\n", encoding="utf-8")
    |
help: Replace for loop with list.extend

Found 64 errors.
No fixes available (13 hidden fixes can be enabled with the `--unsafe-fixes` option).

(Truncated to last 10000 characters out of 31100)

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