fix: override ICD10CM canonical prefix to use purl.bioontology.org#80
Open
kevinschaper wants to merge 2 commits intomainfrom
Open
fix: override ICD10CM canonical prefix to use purl.bioontology.org#80kevinschaper wants to merge 2 commits intomainfrom
kevinschaper wants to merge 2 commits intomainfrom
Conversation
icd.codes is dead/returning 403s. Override the ICD10CM canonical prefix to use http://purl.bioontology.org/ontology/ICD10CM/ which redirects to BioPortal. Also refreshes upstream data. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
matentzn
reviewed
Feb 20, 2026
| linkml,biolink,https://w3id.org/biolink/vocab/,canonical | ||
| linkml,dcterms,http://purl.org/dc/terms/,canonical | ||
| linkml,foaf,http://xmlns.com/foaf/0.1/,canonical | ||
| linkml,ICD10CM,http://purl.bioontology.org/ontology/ICD10CM/,canonical |
There was a problem hiding this comment.
I am not against this, note that Bioregistrysuggests this:
https://www.icd10data.com/search?s=
Which is a bit of a hack - redirecting to the search page rather than the concept page for which you cant construct a URI.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Summary
https://icd.codes/icd10cm/points to a dead domain (returning 403s)ICD10CMtolinked_data.curated.yamlto override the canonical tohttp://purl.bioontology.org/ontology/ICD10CM/, which redirects to BioPortal's ICD10CM class pagesicd.codesURL is preserved as aprefix_aliasmake etl