Repository for ultrasound (US) simulation and photoacoustic (PA) simulation codes + additional documentation
This repository contains the MATLAB scripts and the additional documentation necessary for medical ultrasound and photoacoustic simulation. See "US_codes/US_simulation_guide.pdf" for a manual/operation guide on the ultrasound simulations, and "PA_codes/PA_operation_manual.pdf" for the photoacoustic simulation manual.
To download the entire repository, click on the green "Code" button in the top right, and there a zip file of the entire repository can be downloaded. To download a specific script, go to the script, and click the "raw' button at the top right of the viewer. A text-only copy of the script will be opened, which can then be copied into a new Matlab file on the user's computer (make sure to use the same file names if using this method!).
Overlay_USandPA.m is to be used to co-register the US and PA images for a given phantom. After running both the US and PA simulations, the user can use this script to co-register the two images.
Created and managed by the Penn State BioPhotonics and Ultrasound Imaging Lab.