feat(dataset): ploidy-1 unphased union view (#222)#224

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worktree-unphased-union-ploidy1

Jun 14, 2026

Commits on Jun 14, 2026

feat(dataset): add unphased_union flag on Haps + with_settings (#222)
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feat(dataset): report ploidy=1 and fold n_variants under unphased_union (#222)
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fix(dataset): keep n_variants int32 under unphased_union fold (#222)
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feat(dataset): reject haplotypes/annotated output under unphased_union (#222)
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feat(dataset): fold haplotypes into ploidy-1 union in variant decode (#222)
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test(dataset): assert union fold preserves variant content + fix stale comment (#222)
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refactor(variants): drop retired order-dependent germline-CCF inference (#222)
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docs(bench): update stale note after germline-CCF removal (#222)
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docs(skill): document unphased_union option (#222)
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docs(skill): clarify unphased_union hom-count, grouping, and gotcha style (#222)
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test(dataset): cover unphased_union toggle-off and AF-filter composition (#222)

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docs(dataset): clarify stored-vs-folded ploidy in _output_bytes_per_instance (#222)
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style(test): ruff-format unphased_union test signature (#222)
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